Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008523

Physical Location & Seq

Genomic Coordinates Forward (+)

29104670 .. 29107555

Gene Structure 2886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G293400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCAATGCTCCTAAAAACGACGTCGTCGGGACTGCTCCCTACTATTGCCATTAGCAAAACATTAAACAAATGCTTCTTTACCAAAGCCGCAAGTCCCGCAACTCTGCGTTTGGCGCGTAGATTTCACTGCTCCCTACCCAGAAAAACGACAAAGAAGATGGTGACGCTGATCGTGGCGACGACGACCGACCCGGCCTCCATCAACCCGGCCAATGCCCTCCTAGCCATGCCCGGCTGGGACCCGATCCCTTCTTGCTTACAGGATATGAAGGGGTTTGGCAATGGAGCAGGAGGAGTTAGGGTTTTGCTGCACAACAAGGGGATAGTGGAAGAAGACGACTTGGACAGGCGGTGGGAGGAGGCCACAGGTGAGCGAGTCGATGAGCTGATATTTCTGAGCAAGCACACCGCCGTCTCCAACCGACCTGCCCTGACCGTACACCCGATCGGGGTCCCTCATCTGCGTCCTGGTGACGCTGCGCCGCAAGGTGGGAGGCCTGGTTGGGCCGCGCCCCCAAGTCCGCGCATTGGGCCCTGGCTCAGGCACTTGAAGAAGCTTGCTCAAGCCCACAATTTGGTTCCTGAGTTTGAGATAACTTTGGAGGGCACACATCATGGACCGATCACAAATACACCTACTATGTTCTTGGAGATTGGCAGTACAGATGAGTACTGGAAGAGGCAGGATGCAGCTCAAGTTATTGCTCTATTAGTTTGGGAAGGACTTGGGCTTGGAGGGGGAGCTGCTGTGGGAAACTGGAATGGGGAGAAGGATAAGAATAGAGTTCTTCTTGGCATAGGTGGTGGACATTATGCACCTCGGCATATGGATATAGTTCTGAAAGATGGTGTGTGGGTGGGCCATCTACTGTCGGGTTATTCCTTGCCAATGGAAGATCCAAGCCAGTCCAAAGCAGAAACAAATACAAAAGAAATTGGTGGAACTTGGAGAGAAGCAATCAAAGCAGGATTTGAGGCTACGCAATCAGCTTTCCCTGGTGGGGAAATTCTAGCTCATCTCGATCACAAGAGTTTCAAAAGCTGGCAAAAGAACGCTATAACGGGTTTCCTAGGCGAGCAGAACATCAAAATTGGCAAACCCAATGATTTCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

373

Amino Acids

40.38

Weight (kDa)

8.99

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03800 AT2G03800
fragaria_vesca	FvH4_4g29300 FvH4_4g29300 FvH4_4g29300
malus_domestica	MD13G1056600.v1.1 MD16G1055500.v1.1 MD16G1055900.v1.1
prunus_persica	Prupe.1G293400_v2.0.a1 Prupe.1G293400_v2.0.a1
pyrus_communis	pycom13g05060 pycom16g04870
rosa_chinensis	RchiOBHm_Chr4g0437351
rosa_laevigata	RLG00000006443
rosa_multiflora	Rmu_sc0004759.1_g000015
rosa_roxburghii	Rroxscaffold_5G00378500
rosa_rugosa	Rorug04G0300200
rosa_samantha	Rh4AG355100 Rh4BG364900 Rh4CG379000 Rh4DG358800
rosa_wichuraiana	Rw4G031120 Rw4G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccII	CGCG	3 cut(s)	118, 512, 526
AciI	CCGC	7 cut(s)	90, 99, 352, 411, 485, 510, 524
AclWI	GGATC	2 cut(s)	241, 893
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	1008
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	441, 664, 674
AfiI	CCNNNNNNNGG	6 cut(s)	451, 491, 530, 543, 577, 1003
AgsI	TTSAA	2 cut(s)	553, 1039
AjnI	CCWGG	4 cut(s)	469, 499, 536, 997
AluBI	AGCT	7 cut(s)	388, 559, 695, 746, 992, 1016, 1044
AluI	AGCT	7 cut(s)	388, 559, 695, 746, 992, 1016, 1044
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	2 cut(s)	241, 893
AoxI	GGCC	7 cut(s)	195, 210, 363, 497, 507, 533, 862
ApaI	GGGCCC	1 cut(s)	537
ApeKI	GCWGC	4 cut(s)	310, 479, 692, 746
ApoI	RAATTY	1 cut(s)	1008
AspA2I	CCTAGG	1 cut(s)	1072
AspLEI	GCGC	4 cut(s)	118, 484, 514, 528
AspS9I	GGNCC	7 cut(s)	241, 454, 507, 533, 534, 620, 862
AsuC2I	CCSGG	3 cut(s)	194, 209, 234
AsuHPI	GGTGA	3 cut(s)	175, 383, 485
AvaII	GGWCC	3 cut(s)	241, 454, 620
AvrII	CCTAGG	1 cut(s)	1072
BaeGI	GKGCMC	2 cut(s)	537, 611
BanII	GRGCYC	1 cut(s)	537
BbsI	GAAGAC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	297, 466, 704, 733
BccI	CCATC	4 cut(s)	154, 209, 842, 873
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	4 cut(s)	471, 501, 538, 999
BcnI	CCSGG	3 cut(s)	194, 209, 234
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	3 cut(s)	224, 1013, 1073
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	7 cut(s)	90, 311, 480, 485, 510, 693, 747
BlnI	CCTAGG	1 cut(s)	1072
BlsI	GCNGC	7 cut(s)	91, 312, 481, 486, 511, 694, 748
BmcAI	AGTACT	1 cut(s)	674
Bme1390I	CCNGG	7 cut(s)	194, 209, 234, 471, 501, 538, 999
Bme18I	GGWCC	3 cut(s)	241, 454, 620
BmgT120I	GGNCC	7 cut(s)	241, 454, 507, 533, 534, 620, 862
BmiI	GGNNCC	6 cut(s)	242, 243, 455, 456, 535, 582
BmrFI	CCNGG	7 cut(s)	194, 209, 234, 471, 501, 538, 999
BmsI	GCATC	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	342
Bpu10I	CCTNAGC	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	549, 681
BpuMI	CCSGG	3 cut(s)	194, 209, 234
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	536, 821, 997, 1072
BsaXI	ACNNNNNCTCC	8 cut(s)	182, 212, 288, 318, 487, 517, 735, 765
Bsc4I	CCNNNNNNNGG	6 cut(s)	451, 491, 530, 543, 577, 1003
Bse1I	ACTGG	3 cut(s)	680, 764, 907
Bse3DI	GCAATG	2 cut(s)	12, 289
BseBI	CCWGG	4 cut(s)	471, 501, 538, 999
BseDI	CCNNGG	4 cut(s)	536, 821, 997, 1072
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	6 cut(s)	451, 491, 530, 543, 577, 1003
BseMI	GCAATG	2 cut(s)	12, 289
BseMII	CTCAG	3 cut(s)	389, 556, 576
BseNI	ACTGG	3 cut(s)	680, 764, 907
BseRI	GAGGAG	2 cut(s)	309, 374
BseSI	GKGCMC	2 cut(s)	537, 611
BseXI	GCAGC	4 cut(s)	297, 466, 704, 733
BseYI	CCCAGC	1 cut(s)	237
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	3 cut(s)	118, 512, 526
Bsh1285I	CGRYCG	2 cut(s)	189, 450
BshFI	GGCC	7 cut(s)	197, 212, 365, 499, 509, 535, 864
BsiEI	CGRYCG	2 cut(s)	189, 450
BsiSI	CCGG	3 cut(s)	194, 209, 234
BslFI	GGGAC	4 cut(s)	45, 81, 254, 440
BslI	CCNNNNNNNGG	6 cut(s)	451, 491, 530, 543, 577, 1003
BsmAI	GTCTC	1 cut(s)	421
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	4 cut(s)	45, 81, 254, 440
BsnI	GGCC	7 cut(s)	197, 212, 365, 499, 509, 535, 864
Bsp120I	GGGCCC	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	537, 611
Bsp143I	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
BspACI	CCGC	7 cut(s)	90, 99, 352, 411, 485, 510, 524
BspANI	GGCC	7 cut(s)	197, 212, 365, 499, 509, 535, 864
BspCNI	CTCAG	3 cut(s)	390, 555, 577
BspFNI	CGCG	3 cut(s)	118, 512, 526
BspLI	GGNNCC	6 cut(s)	242, 243, 455, 456, 535, 582
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	241, 893
BsrDI	GCAATG	2 cut(s)	12, 289
BsrI	ACTGG	3 cut(s)	680, 764, 907
BssECI	CCNNGG	4 cut(s)	536, 821, 997, 1072
BssMI	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	1072
Bst2UI	CCWGG	4 cut(s)	471, 501, 538, 999
Bst4CI	ACNGT	2 cut(s)	439, 873
Bst6I	CTCTTC	1 cut(s)	674
BstACI	GRCGYC	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	404, 561, 1046, 1079
BstDEI	CTNAG	3 cut(s)	398, 542, 585
BstENI	CCTNNNNNAGG	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	3 cut(s)	118, 512, 526
BstHHI	GCGC	4 cut(s)	118, 484, 514, 528
BstKTI	GATC	6 cut(s)	174, 249, 450, 627, 901, 1027
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
BstMCI	CGRYCG	2 cut(s)	189, 450
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 115, 224, 532, 965
BstNI	CCWGG	4 cut(s)	471, 501, 538, 999
BstSCI	CCNGG	7 cut(s)	192, 207, 232, 469, 499, 536, 997
BstSLI	GKGCMC	2 cut(s)	537, 611
BstUI	CGCG	3 cut(s)	118, 512, 526
BstV1I	GCAGC	4 cut(s)	297, 466, 704, 733
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	7 cut(s)	197, 212, 365, 499, 509, 535, 864
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	4 cut(s)	404, 561, 1046, 1079
CfoI	GCGC	4 cut(s)	118, 484, 514, 528
Cfr13I	GGNCC	7 cut(s)	241, 454, 507, 533, 534, 620, 862
CseI	GACGC	3 cut(s)	175, 455, 485
Csp6I	GTAC	3 cut(s)	440, 663, 673
CviAII	CATG	2 cut(s)	229, 617
CviQI	GTAC	3 cut(s)	440, 663, 673
DdeI	CTNAG	3 cut(s)	398, 542, 585
DpnI	GATC	6 cut(s)	173, 248, 449, 626, 900, 1026
DpnII	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	1072
Eco147I	AGGCCT	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	3 cut(s)	241, 454, 620
EcoNI	CCTNNNNNAGG	1 cut(s)	541
EcoO109I	RGGNCCY	3 cut(s)	241, 454, 534
EcoRII	CCWGG	4 cut(s)	469, 499, 536, 997
EcoT14I	CCWWGG	1 cut(s)	1072
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	1072
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	2 cut(s)	232, 620
FaqI	GGGAC	4 cut(s)	45, 81, 254, 440
FatI	CATG	2 cut(s)	228, 616
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	828
Fnu4HI	GCNGC	7 cut(s)	90, 311, 480, 485, 510, 693, 747
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	7 cut(s)	90, 311, 480, 485, 510, 693, 747
FspBI	CTAG	3 cut(s)	224, 1013, 1073
GlaI	GCGC	4 cut(s)	117, 483, 513, 527
GluI	GCNGC	7 cut(s)	90, 311, 480, 485, 510, 693, 747
GsaI	CCCAGC	1 cut(s)	241
HaeIII	GGCC	7 cut(s)	197, 212, 365, 499, 509, 535, 864
HapII	CCGG	3 cut(s)	194, 209, 234
HgaI	GACGC	3 cut(s)	175, 455, 485
HhaI	GCGC	4 cut(s)	118, 484, 514, 528
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	2 cut(s)	232, 620
Hin6I	GCGC	4 cut(s)	116, 482, 512, 526
HinP1I	GCGC	4 cut(s)	116, 482, 512, 526
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	1 cut(s)	378
HpaII	CCGG	3 cut(s)	194, 209, 234
HphI	GGTGA	3 cut(s)	175, 383, 485
Hpy166II	GTNNAC	2 cut(s)	442, 809
Hpy188I	TCNGA	2 cut(s)	399, 843
Hpy188III	TCNNGA	3 cut(s)	30, 584, 1022
Hpy8I	GTNNAC	2 cut(s)	442, 809
Hpy99I	CGWCG	5 cut(s)	25, 28, 31, 184, 187
HpyAV	CCTTC	4 cut(s)	261, 265, 716, 766
HpyCH4III	ACNGT	2 cut(s)	439, 873
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	313, 692, 818
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 115, 224, 532, 965
HpyF3I	CTNAG	3 cut(s)	398, 542, 585
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	232, 620
HspAI	GCGC	4 cut(s)	116, 482, 512, 526
KflI	GGGWCCC	2 cut(s)	241, 454
Kzo9I	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
LmnI	GCTCC	5 cut(s)	15, 42, 137, 287, 743
Lsp1109I	GCAGC	4 cut(s)	297, 466, 704, 733
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	3 cut(s)	224, 1013, 1073
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	163, 473
MalI	GATC	6 cut(s)	173, 248, 449, 626, 900, 1026
MboI	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
MboII	GAAGA	7 cut(s)	169, 344, 347, 565, 691, 782, 908
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	2 cut(s)	537, 611
MluCI	AATT	4 cut(s)	574, 936, 1008, 1092
MlyI	GAGTC	1 cut(s)	387
MmeI	TCCRAC	1 cut(s)	444
MseI	TTAA	1 cut(s)	65
MspI	CCGG	3 cut(s)	194, 209, 234
MspR9I	CCNGG	7 cut(s)	194, 209, 234, 471, 501, 538, 999
MvaI	CCWGG	4 cut(s)	471, 501, 538, 999
MvnI	CGCG	3 cut(s)	118, 512, 526
MwoI	GCNNNNNNNGC	5 cut(s)	98, 115, 224, 532, 965
NciI	CCSGG	3 cut(s)	194, 209, 234
NdeI	CATATG	1 cut(s)	828
NdeII	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
NlaIII	CATG	2 cut(s)	232, 620
NlaIV	GGNNCC	6 cut(s)	242, 243, 455, 456, 535, 582
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	2 cut(s)	163, 473
PceI	AGGCCT	1 cut(s)	499
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	7 cut(s)	91, 312, 481, 486, 511, 694, 748
Ple19I	CGATCG	1 cut(s)	450
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	2 cut(s)	241, 454
Psp5II	RGGWCCY	2 cut(s)	241, 454
Psp6I	CCWGG	4 cut(s)	469, 499, 536, 997
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	4 cut(s)	469, 499, 536, 997
PspN4I	GGNNCC	6 cut(s)	242, 243, 455, 456, 535, 582
PspOMI	GGGCCC	1 cut(s)	533
PspPI	GGNCC	7 cut(s)	241, 454, 507, 533, 534, 620, 862
PspPPI	RGGWCCY	2 cut(s)	241, 454
PsuI	RGATCY	1 cut(s)	898
PsyI	GACNNNGTC	1 cut(s)	25
PvuI	CGATCG	1 cut(s)	450
RsaI	GTAC	3 cut(s)	441, 664, 674
RsaNI	GTAC	3 cut(s)	440, 663, 673
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	7 cut(s)	90, 311, 480, 485, 510, 693, 747
Sau3AI	GATC	6 cut(s)	171, 246, 447, 624, 898, 1024
Sau96I	GGNCC	7 cut(s)	241, 454, 507, 533, 534, 620, 862
ScaI	AGTACT	1 cut(s)	674
SchI	GAGTC	1 cut(s)	387
ScrFI	CCNGG	7 cut(s)	194, 209, 234, 471, 501, 538, 999
SduI	GDGCHC	2 cut(s)	537, 611
SfaNI	GCATC	1 cut(s)	679
SinI	GGWCC	3 cut(s)	241, 454, 620
SmlI	CTYRAG	2 cut(s)	564, 696
SmoI	CTYRAG	2 cut(s)	564, 696
Sse9I	AATT	4 cut(s)	574, 936, 1008, 1092
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	7 cut(s)	90, 99, 352, 411, 485, 510, 524
SspMI	CTAG	3 cut(s)	224, 1013, 1073
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	7 cut(s)	192, 207, 232, 469, 499, 536, 997
StyI	CCWWGG	1 cut(s)	1072
TaaI	ACNGT	2 cut(s)	439, 873
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	381, 1023
TaqII	GACCGA	2 cut(s)	203, 637
TasI	AATT	4 cut(s)	574, 936, 1008, 1092
TatI	WGTACW	2 cut(s)	662, 672
TauI	GCSGC	3 cut(s)	92, 487, 512
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	2 cut(s)	163, 473
TseI	GCWGC	4 cut(s)	310, 479, 692, 746
Tsp45I	GTSAC	2 cut(s)	163, 473
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	134
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	577
VpaK11BI	GGWCC	3 cut(s)	241, 454, 620
XagI	CCTNNNNNAGG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	1008
XmaJI	CCTAGG	1 cut(s)	1072
XspI	CTAG	3 cut(s)	224, 1013, 1073
ZraI	GACGTC	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.