Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004759.1

Orthogroup ID

OG0008523

Physical Location & Seq

Genomic Coordinates Forward (+)

53775 .. 56762

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004759.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgggtgagaaaagaaatcaatgggtgagaaaagaaaccgagtttcttaaactgtgttcgaaaaaggctaatgctagccagaacgacgccgtctccactgctcacttttgccactacaaaactggtgtgctgcttccacagtttggcaccaaaaaaatcaccgaacaagatggtgaagctgatcgtggcgacgacgaccgatccggcctccgtcaaccctgccaatgttctcttatccaagcccggctggaggatatgaagagcttcgctaacggagccgttagggttttgctgcacaacaggagcataatcgaagaggacgacttggacgctcgctgggaacaagccaccggcgaacacgtggacgagctcatcttcttgagcaagcacaaagccgcttccagccgccctgcgcttactgttcaccccatcggggttcctcatttgcgaaacggcgacgttttgccgcagggcgggaagccgggctgggccgcgccgccgaatccgaggattgggccctggctcaggctcttgaagagaatcgcgcaggatcgcaacttggtccctgagtttgaggtgactttggaggctacacatcatggaccgattacagacacgcctgccatgttcctggagattggcagtacagatgattgctggaagaggcaggatgcagctgaagttatggctctattagtttgggaaggacttgggcttggagggggagctgctgttggaaactggaacggggggaacgataataaaagagttctgcttgggataggtggtggacattatgtacctcgtcatatggatatagctttgaaagatgatgtctgggtgggccatctaatttcgggttattcgttaccaatggaagatccgagccagtccaagacagaaacaaatacaaaagatatcggtggaacttggaaacaatcaatcaaagtagcatttgaggctacgcaatcggctttccctggtggagaaattgtagctcatcttgatcacaagagtttcaaaagctggcaaaagaatgccataacgagtttcctagaggagcagaacattacaattagcaaacgcgatttcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

365

Amino Acids

40.41

Weight (kDa)

6.28

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03800 AT2G03800
fragaria_vesca	FvH4_4g29300 FvH4_4g29300 FvH4_4g29300
malus_domestica	MD13G1056600.v1.1 MD16G1055500.v1.1 MD16G1055900.v1.1
prunus_persica	Prupe.1G293400_v2.0.a1 Prupe.1G293400_v2.0.a1
pyrus_communis	pycom13g05060 pycom16g04870
rosa_chinensis	RchiOBHm_Chr4g0437351
rosa_laevigata	RLG00000006443
rosa_multiflora	Rmu_sc0004759.1_g000015
rosa_roxburghii	Rroxscaffold_5G00378500
rosa_rugosa	Rorug04G0300200
rosa_samantha	Rh4AG355100 Rh4BG364900 Rh4CG379000 Rh4DG358800
rosa_wichuraiana	Rw4G031120 Rw4G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccII	CGCG	3 cut(s)	494, 545, 1086
AciI	CCGC	6 cut(s)	396, 406, 467, 474, 492, 497
AclWI	GGATC	3 cut(s)	195, 558, 875
AcuI	CTGAAG	1 cut(s)	699
AcvI	CACGTG	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	646, 801
AfiI	CCNNNNNNNGG	6 cut(s)	143, 250, 433, 473, 512, 525
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	3 cut(s)	535, 826, 1021
AjnI	CCWGG	3 cut(s)	518, 630, 979
AluBI	AGCT	8 cut(s)	179, 264, 370, 677, 728, 821, 998, 1026
AluI	AGCT	8 cut(s)	179, 264, 370, 677, 728, 821, 998, 1026
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	3 cut(s)	195, 558, 875
AoxI	GGCC	4 cut(s)	205, 489, 515, 844
ApaI	GGGCCC	1 cut(s)	519
ApeKI	GCWGC	4 cut(s)	130, 292, 674, 728
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	3 cut(s)	415, 496, 547
AspS9I	GGNCC	6 cut(s)	489, 515, 516, 562, 602, 844
AsuC2I	CCSGG	2 cut(s)	244, 483
AsuHPI	GGTGA	6 cut(s)	17, 37, 151, 185, 416, 589
AsuII	TTCGAA	1 cut(s)	59
AsuNHI	GCTAGC	1 cut(s)	74
AvaII	GGWCC	2 cut(s)	562, 602
BaeGI	GKGCMC	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	372, 519
BbrPI	CACGTG	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	4 cut(s)	117, 279, 686, 715
BccI	CCATC	3 cut(s)	164, 437, 855
BceAI	ACGGC	3 cut(s)	74, 263, 469
BciT130I	CCWGG	3 cut(s)	520, 632, 981
BclI	TGATCA	1 cut(s)	1006
BcnI	CCSGG	2 cut(s)	244, 483
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	75, 1055
BisI	GCNGC	9 cut(s)	131, 293, 396, 406, 467, 492, 497, 675, 729
BlsI	GCNGC	9 cut(s)	132, 294, 397, 407, 468, 493, 498, 676, 730
Bme1390I	CCNGG	5 cut(s)	244, 483, 520, 632, 981
Bme18I	GGWCC	2 cut(s)	562, 602
BmgT120I	GGNCC	6 cut(s)	489, 515, 516, 562, 602, 844
BmiI	GGNNCC	5 cut(s)	148, 277, 438, 517, 564
BmrFI	CCNGG	5 cut(s)	244, 483, 520, 632, 981
BmsI	GCATC	1 cut(s)	661
BmtI	GCTAGC	1 cut(s)	78
BpmI	CTGGAG	2 cut(s)	269, 653
Bpu10I	CCTNAGC	1 cut(s)	524
Bpu14I	TTCGAA	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	244, 483
BsaAI	YACGTR	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	506, 518, 979
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 717, 747, 978, 1008
Bsc4I	CCNNNNNNNGG	6 cut(s)	143, 250, 433, 473, 512, 525
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	127, 746, 889
BseBI	CCWGG	3 cut(s)	520, 632, 981
BseDI	CCNNGG	3 cut(s)	506, 518, 979
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	6 cut(s)	143, 250, 433, 473, 512, 525
BseMII	CTCAG	2 cut(s)	538, 558
BseNI	ACTGG	3 cut(s)	127, 746, 889
BseRI	GAGGAG	1 cut(s)	1073
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	4 cut(s)	117, 279, 686, 715
BseYI	CCCAGC	2 cut(s)	336, 486
BsgI	GTGCAG	1 cut(s)	278
Bsh1236I	CGCG	3 cut(s)	494, 545, 1086
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	207, 491, 517, 846
BshNI	GGYRCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	372
BsiSI	CCGG	4 cut(s)	204, 244, 351, 482
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	6 cut(s)	143, 250, 433, 473, 512, 525
BsmAI	GTCTC	1 cut(s)	97
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	4 cut(s)	207, 491, 517, 846
Bsp119I	TTCGAA	1 cut(s)	59
Bsp120I	GGGCCC	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	372, 519
Bsp143I	GATC	5 cut(s)	181, 200, 550, 880, 1006
BspACI	CCGC	6 cut(s)	396, 406, 467, 474, 492, 497
BspANI	GGCC	4 cut(s)	207, 491, 517, 846
BspCNI	CTCAG	2 cut(s)	537, 559
BspFNI	CGCG	3 cut(s)	494, 545, 1086
BspLI	GGNNCC	5 cut(s)	148, 277, 438, 517, 564
BspOI	GCTAGC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	195, 558, 875
BspQI	GCTCTTC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	3 cut(s)	127, 746, 889
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	506, 518, 979
BssMI	GATC	5 cut(s)	181, 200, 550, 880, 1006
BssNI	GRCGYC	1 cut(s)	87
Bst2UI	CCWGG	3 cut(s)	520, 632, 981
Bst4CI	ACNGT	3 cut(s)	54, 141, 421
Bst6I	CTCTTC	4 cut(s)	254, 309, 530, 656
BstACI	GRCGYC	1 cut(s)	87
BstBAI	YACGTR	1 cut(s)	361
BstBI	TTCGAA	1 cut(s)	59
BstC8I	GCNNGC	5 cut(s)	76, 334, 386, 621, 1028
BstDEI	CTNAG	2 cut(s)	524, 567
BstENI	CCTNNNNNAGG	1 cut(s)	523
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	3 cut(s)	494, 545, 1086
BstHHI	GCGC	3 cut(s)	415, 496, 547
BstKTI	GATC	5 cut(s)	184, 203, 553, 883, 1009
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	5 cut(s)	181, 200, 550, 880, 1006
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 959
BstNI	CCWGG	3 cut(s)	520, 632, 981
BstSCI	CCNGG	5 cut(s)	242, 481, 518, 630, 979
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	3 cut(s)	494, 545, 1086
BstV1I	GCAGC	4 cut(s)	117, 279, 686, 715
BstX2I	RGATCY	1 cut(s)	880
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	207, 491, 517, 846
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	5 cut(s)	76, 334, 386, 621, 1028
CfoI	GCGC	3 cut(s)	415, 496, 547
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	6 cut(s)	489, 515, 516, 562, 602, 844
CseI	GACGC	2 cut(s)	95, 338
Csp6I	GTAC	2 cut(s)	645, 800
CviAII	CATG	2 cut(s)	599, 625
CviQI	GTAC	2 cut(s)	645, 800
DdeI	CTNAG	2 cut(s)	524, 567
DpnI	GATC	5 cut(s)	183, 202, 552, 882, 1008
DpnII	GATC	5 cut(s)	181, 200, 550, 880, 1006
Eam1104I	CTCTTC	4 cut(s)	254, 309, 530, 656
EarI	CTCTTC	4 cut(s)	254, 309, 530, 656
Ecl136II	GAGCTC	1 cut(s)	370
Eco24I	GRGCYC	2 cut(s)	372, 519
Eco32I	GATATC	1 cut(s)	919
Eco47I	GGWCC	2 cut(s)	562, 602
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	699
Eco72I	CACGTG	1 cut(s)	361
EcoICRI	GAGCTC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	516
EcoRII	CCWGG	3 cut(s)	518, 630, 979
EcoRV	GATATC	1 cut(s)	919
EcoT38I	GRGCYC	2 cut(s)	372, 519
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	2 cut(s)	602, 628
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	2 cut(s)	598, 624
FauI	CCCGC	1 cut(s)	467
FauNDI	CATATG	1 cut(s)	810
FbaI	TGATCA	1 cut(s)	1006
Fnu4HI	GCNGC	9 cut(s)	131, 293, 396, 406, 467, 492, 497, 675, 729
FokI	GGATG	1 cut(s)	683
FriOI	GRGCYC	2 cut(s)	372, 519
Fsp4HI	GCNGC	9 cut(s)	131, 293, 396, 406, 467, 492, 497, 675, 729
FspBI	CTAG	2 cut(s)	75, 1055
GlaI	GCGC	3 cut(s)	414, 495, 546
GluI	GCNGC	9 cut(s)	131, 293, 396, 406, 467, 492, 497, 675, 729
GsaI	CCCAGC	2 cut(s)	340, 490
GsuI	CTGGAG	2 cut(s)	269, 653
HaeIII	GGCC	4 cut(s)	207, 491, 517, 846
HapII	CCGG	4 cut(s)	204, 244, 351, 482
HgaI	GACGC	2 cut(s)	95, 338
HhaI	GCGC	3 cut(s)	415, 496, 547
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	602, 628
Hin6I	GCGC	3 cut(s)	413, 494, 545
HinP1I	GCGC	3 cut(s)	413, 494, 545
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	502, 540
HpaII	CCGG	4 cut(s)	204, 244, 351, 482
HphI	GGTGA	6 cut(s)	17, 37, 151, 185, 416, 589
Hpy166II	GTNNAC	4 cut(s)	215, 364, 424, 791
Hpy188I	TCNGA	3 cut(s)	507, 885, 1097
Hpy188III	TCNNGA	3 cut(s)	379, 532, 1004
Hpy8I	GTNNAC	4 cut(s)	215, 364, 424, 791
Hpy99I	CGWCG	4 cut(s)	89, 194, 197, 461
HpyAV	CCTTC	1 cut(s)	698
HpyCH4III	ACNGT	3 cut(s)	54, 141, 421
HpyCH4IV	ACGT	2 cut(s)	360, 459
HpyCH4V	TGCA	2 cut(s)	295, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 959
HpyF3I	CTNAG	2 cut(s)	524, 567
HpySE526I	ACGT	2 cut(s)	360, 459
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	602, 628
HspAI	GCGC	3 cut(s)	413, 494, 545
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	5 cut(s)	181, 200, 550, 880, 1006
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	4 cut(s)	275, 303, 725, 1060
Lsp1109I	GCAGC	4 cut(s)	117, 279, 686, 715
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	75, 1055
MaeII	ACGT	2 cut(s)	360, 459
MaeIII	GTNAC	2 cut(s)	577, 867
MalI	GATC	5 cut(s)	183, 202, 552, 882, 1008
MboI	GATC	5 cut(s)	181, 200, 550, 880, 1006
MboII	GAAGA	7 cut(s)	271, 326, 367, 547, 673, 890, 1084
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	2 cut(s)	372, 519
MluCI	AATT	3 cut(s)	852, 990, 1074
MmeI	TCCRAC	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	4 cut(s)	204, 244, 351, 482
MspR9I	CCNGG	5 cut(s)	244, 483, 520, 632, 981
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	3 cut(s)	520, 632, 981
MvnI	CGCG	3 cut(s)	494, 545, 1086
MwoI	GCNNNNNNNGC	2 cut(s)	275, 959
NciI	CCSGG	2 cut(s)	244, 483
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	5 cut(s)	181, 200, 550, 880, 1006
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	602, 628
NlaIV	GGNNCC	5 cut(s)	148, 277, 438, 517, 564
NmuCI	GTSAC	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	59
PciSI	GCTCTTC	1 cut(s)	254
PcsI	WCGNNNNNNNCGW	3 cut(s)	318, 753, 863
PctI	GAATGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	502, 540
PflFI	GACNNNGTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	630
PkrI	GCNGC	9 cut(s)	132, 294, 397, 407, 468, 493, 498, 676, 730
PmaCI	CACGTG	1 cut(s)	361
PmlI	CACGTG	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	3 cut(s)	518, 630, 979
PspCI	CACGTG	1 cut(s)	361
PspFI	CCCAGC	2 cut(s)	336, 486
PspGI	CCWGG	3 cut(s)	518, 630, 979
PspN4I	GGNNCC	5 cut(s)	148, 277, 438, 517, 564
PspOMI	GGGCCC	1 cut(s)	515
PspPI	GGNCC	6 cut(s)	489, 515, 516, 562, 602, 844
PsuI	RGATCY	1 cut(s)	880
PsyI	GACNNNGTC	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	646, 801
RsaNI	GTAC	2 cut(s)	645, 800
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	9 cut(s)	131, 293, 396, 406, 467, 492, 497, 675, 729
Sau3AI	GATC	5 cut(s)	181, 200, 550, 880, 1006
Sau96I	GGNCC	6 cut(s)	489, 515, 516, 562, 602, 844
ScrFI	CCNGG	5 cut(s)	244, 483, 520, 632, 981
SduI	GDGCHC	2 cut(s)	372, 519
SfaNI	GCATC	1 cut(s)	661
SfuI	TTCGAA	1 cut(s)	59
SgrAI	CRCCGGYG	1 cut(s)	350
SinI	GGWCC	2 cut(s)	562, 602
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	3 cut(s)	852, 990, 1074
SsiI	CCGC	6 cut(s)	396, 406, 467, 474, 492, 497
SspMI	CTAG	2 cut(s)	75, 1055
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	5 cut(s)	242, 481, 518, 630, 979
TaaI	ACNGT	3 cut(s)	54, 141, 421
TaiI	ACGT	2 cut(s)	363, 462
TaqI	TCGA	2 cut(s)	59, 312
TaqII	GACCGA	2 cut(s)	213, 619
TasI	AATT	3 cut(s)	852, 990, 1074
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	5 cut(s)	398, 408, 469, 494, 499
TfiI	GAWTC	2 cut(s)	502, 540
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	4 cut(s)	130, 292, 674, 728
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	2 cut(s)	200, 288
TspRI	CASTG	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	562, 602
XagI	CCTNNNNNAGG	1 cut(s)	523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	75, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.