Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008523

Physical Location & Seq

Genomic Coordinates Forward (+)

47504263 .. 47505773

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0300200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTACAGTGGAAGACAAAAAAGTCACACTGATTTTTTAAATCAGTGTGATACTGTTCTCTTAAGGACTGATGAGTTTTTAGTGGCTACAAAAGAGGTGCTATTGGGGAAATTTGTAGTAGTGGCGGCCGGTTTTGATAAGCTTATCAGTGTTAAAGATTTTACTGATGACTCCAACGGATATCTAGTTGATGACACGTGCGTGTTTGGTGCTGAGGTCTTTGTCTGTAAAGAAAGGAGAACAGGCAAAGGAGAGTGTCTATCAAGGATCCAGAATCCTTCAACGTACAAGTATGTTTGGAAAATTGATAATTTTTTAAAGACAGATGCCGTATGCCATTGTTCAGAAGCATTCAGTGCTGGAAATCAGAAATGGAAGATAGAACTCTATCCCAAGGGAATTAATAAAGGAAAGGGAAGTCATGTTTCTCTGTTTTTTAAACTGGCTAATCCGGAAACCCTTCCTCCTGGCTCTAAAATATATGCAGACTATACGCTACGCATCCAAGATCAAATTCATTTCAAGCATGATCATGGAAGAGGTAGTGCCAGTTTCCACGCTACAGACACATCTTGGGGTTGGTTTAAATTCATCAACAAGACACTTTCAGTCAAGCTGGCAATGGGTTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

211

Amino Acids

23.92

Weight (kDa)

8.81

Isoelectric Point (pI)

16.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	97 - 200	5.6e-23	MATH domain
MATH	PF00917	114 - 199	1.4e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03800 AT2G03800
fragaria_vesca	FvH4_4g29300 FvH4_4g29300 FvH4_4g29300
malus_domestica	MD13G1056600.v1.1 MD16G1055500.v1.1 MD16G1055900.v1.1
prunus_persica	Prupe.1G293400_v2.0.a1 Prupe.1G293400_v2.0.a1
pyrus_communis	pycom13g05060 pycom16g04870
rosa_chinensis	RchiOBHm_Chr4g0437351
rosa_laevigata	RLG00000006443
rosa_multiflora	Rmu_sc0004759.1_g000015
rosa_roxburghii	Rroxscaffold_5G00378500
rosa_rugosa	Rorug04G0300200
rosa_samantha	Rh4AG355100 Rh4BG364900 Rh4CG379000 Rh4DG358800
rosa_wichuraiana	Rw4G031120 Rw4G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	451
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	262, 275
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	110, 513, 587
AcvI	CACGTG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	5, 287
AflII	CTTAAG	1 cut(s)	61
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	2 cut(s)	282, 523
AjnI	CCWGG	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	2 cut(s)	142, 616
AluI	AGCT	2 cut(s)	142, 616
AlwI	GGATC	2 cut(s)	262, 275
Aor13HI	TCCGGA	1 cut(s)	451
AoxI	GGCC	1 cut(s)	126
ApoI	RAATTY	3 cut(s)	110, 513, 587
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	468
BclI	TGATCA	1 cut(s)	529
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	561
BfrI	CTTAAG	1 cut(s)	61
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	316, 510
BpiI	GAAGAC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	447, 549
Bse3DI	GCAATG	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	447, 549
BseX3I	CGGCCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	129, 452
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	128
Bsp13I	TCCGGA	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	267, 508, 529
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	205
BspEI	TCCGGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	269
BspPI	GGATC	2 cut(s)	262, 275
BspTI	CTTAAG	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	447, 549
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	3 cut(s)	267, 508, 529
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	8, 55
Bst6I	CTCTTC	1 cut(s)	532
BstAFI	CTTAAG	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	198
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	501
BstKTI	GATC	3 cut(s)	270, 511, 532
BstMBI	GATC	3 cut(s)	267, 508, 529
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	1 cut(s)	561
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BstZI	CGGCCG	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	501
BtsIMutI	CAGTG	5 cut(s)	13, 27, 50, 154, 361
Cac8I	GCNNGC	1 cut(s)	618
Cfr10I	RCCGGY	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	4, 286
CviAII	CATG	3 cut(s)	422, 527, 533
CviJI	RGCY	6 cut(s)	86, 128, 142, 446, 471, 616
CviKI_1	RGCY	6 cut(s)	86, 128, 142, 446, 471, 616
CviQI	GTAC	2 cut(s)	4, 286
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	269, 510, 531
DpnII	GATC	3 cut(s)	267, 508, 529
DraI	TTTAAA	4 cut(s)	39, 318, 439, 586
DrdI	GACNNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	126
EagI	CGGCCG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
EclXI	CGGCCG	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	182
Eco52I	CGGCCG	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	425, 530, 536
FaiI	YATR	8 cut(s)	294, 334, 423, 481, 483, 492, 528, 534
FatI	CATG	3 cut(s)	421, 526, 532
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	2 cut(s)	129, 452
Hin1II	CATG	3 cut(s)	425, 530, 536
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	170, 274
HpaII	CCGG	2 cut(s)	129, 452
Hpy188I	TCNGA	2 cut(s)	346, 369
Hpy188III	TCNNGA	2 cut(s)	271, 452
HpyAV	CCTTC	2 cut(s)	288, 470
HpyCH4III	ACNGT	2 cut(s)	8, 55
HpyCH4IV	ACGT	2 cut(s)	197, 284
HpyCH4V	TGCA	1 cut(s)	485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	197, 284
Hsp92II	CATG	3 cut(s)	425, 530, 536
Kpn2I	TCCGGA	1 cut(s)	451
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	267, 508, 529
LweI	GCATC	2 cut(s)	316, 510
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	2 cut(s)	197, 284
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	3 cut(s)	269, 510, 531
MboI	GATC	3 cut(s)	267, 508, 529
MboII	GAAGA	3 cut(s)	24, 388, 549
MflI	RGATCY	1 cut(s)	267
MluCI	AATT	6 cut(s)	110, 303, 310, 399, 513, 587
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	88, 208, 474, 533
MroI	TCCGGA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	7 cut(s)	38, 62, 153, 317, 402, 438, 585
MslI	CAYNNNNRTG	2 cut(s)	200, 531
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	2 cut(s)	129, 452
MspR9I	CCNGG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	3 cut(s)	267, 508, 529
NlaIII	CATG	3 cut(s)	425, 530, 536
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	200
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	164
PmaCI	CACGTG	1 cut(s)	198
PmlI	CACGTG	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	198
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	466
PspCI	CACGTG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	267
RsaI	GTAC	2 cut(s)	5, 287
RsaNI	GTAC	2 cut(s)	4, 286
RseI	CAYNNNNRTG	2 cut(s)	200, 531
SaqAI	TTAA	7 cut(s)	38, 62, 153, 317, 402, 438, 585
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	267, 508, 529
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	468
SetI	ASST	7 cut(s)	99, 144, 200, 219, 287, 544, 618
SfaNI	GCATC	2 cut(s)	316, 510
SfcI	CTRYAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	2 cut(s)	200, 531
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	6 cut(s)	110, 303, 310, 399, 513, 587
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	8, 55
TaiI	ACGT	2 cut(s)	200, 287
TasI	AATT	6 cut(s)	110, 303, 310, 399, 513, 587
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	7 cut(s)	38, 62, 153, 317, 402, 438, 585
Tru9I	TTAA	7 cut(s)	38, 62, 153, 317, 402, 438, 585
TscAI	CASTG	5 cut(s)	13, 34, 50, 154, 361
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	506, 580
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	5 cut(s)	13, 34, 50, 154, 361
Vha464I	CTTAAG	1 cut(s)	61
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	3 cut(s)	110, 513, 587
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.