Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008523

Physical Location & Seq

Genomic Coordinates Reverse (-)

58954538 .. 58957855

Gene Structure 3318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00378500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTGAAGCTGATCGTGGCAACGACGACTGATCCGGCCTCCATCAACCCTGCCAATGCTCTCTTATCCAAGCCCGGCTGGTCCCCAACCCCTTCTCTTCTACAGGAGGATATGAAGAGCTTCGCTAACGACTCCGTTAGGGTTTTGCTGCACAACAGGAGCATAATCGAAGAGGACGACTTGGACGCTCGCTGGGAACAAGCCACCGGCGAACACGTGGACGAGCTCATCTTCTTGAGCAAGCACACAGCCGCTTCCAGCCGCCCTGCGCTTACTGTTCACCCGTTCGGGGTTCCTCATTTGCGAAACGGCGACGTTTTGCCGCAGGGCGGGAAGCCGGGCTGGGCCGCGCCGCCGAATCCGAGGATTGGGCCCTGGCTCAGGCTCTTGAAGAGAATTGCGCAAGATCACAACTTGGTCCCTGAGTTTGAGGTGACTTTGGAGGCGACACATCATGGGCCGATTACAGACACGCCTGCCATGTTCCTGGAGATTGGCAGTACAGATGATTGCTGGAAGAGGCAGGATGCAGCTGAAGTTATGGCTCTAGTTGAGGGGAATGATAATAAAAGAGTTCTGCTTGGGATAGGTGGTGGACATTATGTACCTCGTCATATGGATATAGCTCTGAAAGATGATGTCTGGGTGGGCCATCTAATTTCGGGTTATTCGTTACCAATGGAAGATCCGAGCCAGTACAAGACAGAAACAAATACAAAAGATATCGGTGGAACTTGGAAACAATCAATCAAAGTAGCATTTGAGGCTACGCAATCGGCTTTCCCTGGTGGAGAAATTGTAGCTCATCTTGATCACAAGAGTTTCAAAAGCTGGCAAAAGAATGCTATAACGAGTTTCCTAGAGGAGCAGAACATTACAATTAGCAAACGCGATTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

300

Amino Acids

33.22

Weight (kDa)

5.69

Isoelectric Point (pI)

49.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_deacylase	PF04414	70 - 294	1.3e-55	D-aminoacyl-tRNA deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03800 AT2G03800
fragaria_vesca	FvH4_4g29300 FvH4_4g29300 FvH4_4g29300
malus_domestica	MD13G1056600.v1.1 MD16G1055500.v1.1 MD16G1055900.v1.1
prunus_persica	Prupe.1G293400_v2.0.a1 Prupe.1G293400_v2.0.a1
pyrus_communis	pycom13g05060 pycom16g04870
rosa_chinensis	RchiOBHm_Chr4g0437351
rosa_laevigata	RLG00000006443
rosa_multiflora	Rmu_sc0004759.1_g000015
rosa_roxburghii	Rroxscaffold_5G00378500
rosa_rugosa	Rorug04G0300200
rosa_samantha	Rh4AG355100 Rh4BG364900 Rh4CG379000 Rh4DG358800
rosa_wichuraiana	Rw4G031120 Rw4G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	402
AccII	CGCG	2 cut(s)	350, 891
AciI	CCGC	6 cut(s)	252, 262, 323, 330, 348, 353
AclWI	GGATC	2 cut(s)	26, 680
AcuI	CTGAAG	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	217
AfaI	GTAC	3 cut(s)	502, 606, 698
AfiI	CCNNNNNNNGG	4 cut(s)	289, 329, 368, 381
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	391, 826
AjnI	CCWGG	3 cut(s)	374, 486, 784
AluBI	AGCT	7 cut(s)	10, 120, 226, 533, 626, 803, 831
AluI	AGCT	7 cut(s)	10, 120, 226, 533, 626, 803, 831
Alw21I	GWGCWC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	26, 680
AoxI	GGCC	5 cut(s)	36, 345, 371, 458, 649
ApaI	GGGCCC	1 cut(s)	375
ApeKI	GCWGC	2 cut(s)	148, 530
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	3 cut(s)	271, 352, 403
AspS9I	GGNCC	7 cut(s)	81, 345, 371, 372, 418, 458, 649
AsuC2I	CCSGG	2 cut(s)	75, 339
AsuHPI	GGTGA	3 cut(s)	16, 272, 445
AvaII	GGWCC	2 cut(s)	81, 418
BaeGI	GKGCMC	1 cut(s)	375
BanII	GRGCYC	2 cut(s)	228, 375
BbrPI	CACGTG	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	135, 542
BccI	CCATC	2 cut(s)	50, 660
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	3 cut(s)	376, 488, 786
BclI	TGATCA	1 cut(s)	811
BcnI	CCSGG	2 cut(s)	75, 339
BfaI	CTAG	2 cut(s)	548, 860
BfmI	CTRYAG	1 cut(s)	101
BisI	GCNGC	7 cut(s)	149, 252, 262, 323, 348, 353, 531
BlsI	GCNGC	7 cut(s)	150, 253, 263, 324, 349, 354, 532
Bme1390I	CCNGG	5 cut(s)	75, 339, 376, 488, 786
Bme18I	GGWCC	2 cut(s)	81, 418
BmgT120I	GGNCC	7 cut(s)	81, 345, 371, 372, 418, 458, 649
BmiI	GGNNCC	4 cut(s)	83, 294, 373, 420
BmrFI	CCNGG	5 cut(s)	75, 339, 376, 488, 786
BmsI	GCATC	1 cut(s)	517
BpmI	CTGGAG	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	75, 339
BsaAI	YACGTR	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	362, 374, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	783, 813
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 329, 368, 381
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	694
BseBI	CCWGG	3 cut(s)	376, 488, 786
BseDI	CCNNGG	3 cut(s)	362, 374, 784
BseGI	GGATG	1 cut(s)	532
BseLI	CCNNNNNNNGG	4 cut(s)	289, 329, 368, 381
BseMII	CTCAG	2 cut(s)	394, 414
BseNI	ACTGG	1 cut(s)	694
BseRI	GAGGAG	1 cut(s)	878
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	135, 542
BseYI	CCCAGC	2 cut(s)	192, 342
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	2 cut(s)	350, 891
BshFI	GGCC	5 cut(s)	38, 347, 373, 460, 651
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	4 cut(s)	35, 75, 207, 338
BslFI	GGGAC	2 cut(s)	67, 404
BslI	CCNNNNNNNGG	4 cut(s)	289, 329, 368, 381
BsmFI	GGGAC	2 cut(s)	67, 404
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	5 cut(s)	38, 347, 373, 460, 651
Bsp120I	GGGCCC	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	228, 375
Bsp143I	GATC	5 cut(s)	12, 31, 406, 685, 811
BspACI	CCGC	6 cut(s)	252, 262, 323, 330, 348, 353
BspANI	GGCC	5 cut(s)	38, 347, 373, 460, 651
BspCNI	CTCAG	2 cut(s)	393, 415
BspFNI	CGCG	2 cut(s)	350, 891
BspLI	GGNNCC	4 cut(s)	83, 294, 373, 420
BspPI	GGATC	2 cut(s)	26, 680
BspQI	GCTCTTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	694
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	362, 374, 784
BssMI	GATC	5 cut(s)	12, 31, 406, 685, 811
Bst2UI	CCWGG	3 cut(s)	376, 488, 786
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	5 cut(s)	102, 110, 165, 386, 512
BstBAI	YACGTR	1 cut(s)	217
BstC8I	GCNNGC	4 cut(s)	190, 242, 477, 833
BstDEI	CTNAG	2 cut(s)	380, 423
BstENI	CCTNNNNNAGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	532
BstFNI	CGCG	2 cut(s)	350, 891
BstHHI	GCGC	3 cut(s)	271, 352, 403
BstKTI	GATC	5 cut(s)	15, 34, 409, 688, 814
BstMBI	GATC	5 cut(s)	12, 31, 406, 685, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNI	CCWGG	3 cut(s)	376, 488, 786
BstSCI	CCNGG	5 cut(s)	73, 337, 374, 486, 784
BstSFI	CTRYAG	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	375
BstUI	CGCG	2 cut(s)	350, 891
BstV1I	GCAGC	2 cut(s)	135, 542
BstX2I	RGATCY	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	685
BsuRI	GGCC	5 cut(s)	38, 347, 373, 460, 651
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	4 cut(s)	190, 242, 477, 833
CfoI	GCGC	3 cut(s)	271, 352, 403
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	7 cut(s)	81, 345, 371, 372, 418, 458, 649
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	3 cut(s)	501, 605, 697
CviAII	CATG	2 cut(s)	455, 481
CviQI	GTAC	3 cut(s)	501, 605, 697
DdeI	CTNAG	2 cut(s)	380, 423
DpnI	GATC	5 cut(s)	14, 33, 408, 687, 813
DpnII	GATC	5 cut(s)	12, 31, 406, 685, 811
Eam1104I	CTCTTC	5 cut(s)	102, 110, 165, 386, 512
EarI	CTCTTC	5 cut(s)	102, 110, 165, 386, 512
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	228, 375
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	2 cut(s)	81, 418
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	226
EcoNI	CCTNNNNNAGG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	374, 486, 784
EcoRV	GATATC	1 cut(s)	724
EcoT38I	GRGCYC	2 cut(s)	228, 375
FaeI	CATG	2 cut(s)	458, 484
FaqI	GGGAC	2 cut(s)	67, 404
FatI	CATG	2 cut(s)	454, 480
FauI	CCCGC	1 cut(s)	323
FauNDI	CATATG	1 cut(s)	615
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	7 cut(s)	149, 252, 262, 323, 348, 353, 531
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	2 cut(s)	228, 375
Fsp4HI	GCNGC	7 cut(s)	149, 252, 262, 323, 348, 353, 531
FspBI	CTAG	2 cut(s)	548, 860
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	3 cut(s)	270, 351, 402
GluI	GCNGC	7 cut(s)	149, 252, 262, 323, 348, 353, 531
GsaI	CCCAGC	2 cut(s)	196, 346
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	5 cut(s)	38, 347, 373, 460, 651
HapII	CCGG	4 cut(s)	35, 75, 207, 338
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	3 cut(s)	271, 352, 403
Hin1II	CATG	2 cut(s)	458, 484
Hin6I	GCGC	3 cut(s)	269, 350, 401
HinP1I	GCGC	3 cut(s)	269, 350, 401
HinfI	GANTC	2 cut(s)	131, 358
HpaII	CCGG	4 cut(s)	35, 75, 207, 338
HphI	GGTGA	3 cut(s)	16, 272, 445
Hpy166II	GTNNAC	3 cut(s)	220, 280, 596
Hpy188I	TCNGA	4 cut(s)	363, 630, 690, 902
Hpy188III	TCNNGA	3 cut(s)	235, 388, 809
Hpy8I	GTNNAC	3 cut(s)	220, 280, 596
Hpy99I	CGWCG	2 cut(s)	28, 317
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	216, 315
HpyCH4V	TGCA	2 cut(s)	151, 530
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	2 cut(s)	380, 423
HpySE526I	ACGT	2 cut(s)	216, 315
Hsp92II	CATG	2 cut(s)	458, 484
HspAI	GCGC	3 cut(s)	269, 350, 401
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	5 cut(s)	12, 31, 406, 685, 811
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	2 cut(s)	159, 865
Lsp1109I	GCAGC	2 cut(s)	135, 542
LweI	GCATC	1 cut(s)	517
MaeI	CTAG	2 cut(s)	548, 860
MaeII	ACGT	2 cut(s)	216, 315
MaeIII	GTNAC	2 cut(s)	433, 672
MalI	GATC	5 cut(s)	14, 33, 408, 687, 813
MboI	GATC	5 cut(s)	12, 31, 406, 685, 811
MboII	GAAGA	8 cut(s)	89, 127, 182, 223, 403, 529, 695, 889
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	2 cut(s)	228, 375
MluCI	AATT	4 cut(s)	396, 657, 795, 879
MlyI	GAGTC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	4 cut(s)	35, 75, 207, 338
MspR9I	CCNGG	5 cut(s)	75, 339, 376, 488, 786
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	3 cut(s)	376, 488, 786
MvnI	CGCG	2 cut(s)	350, 891
MwoI	GCNNNNNNNGC	1 cut(s)	764
NciI	CCSGG	2 cut(s)	75, 339
NdeI	CATATG	1 cut(s)	615
NdeII	GATC	5 cut(s)	12, 31, 406, 685, 811
NlaIII	CATG	2 cut(s)	458, 484
NlaIV	GGNNCC	4 cut(s)	83, 294, 373, 420
NmuCI	GTSAC	1 cut(s)	433
NsbI	TGCGCA	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 668
PctI	GAATGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	486
PkrI	GCNGC	7 cut(s)	150, 253, 263, 324, 349, 354, 532
PleI	GAGTC	1 cut(s)	125
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	3 cut(s)	374, 486, 784
PspCI	CACGTG	1 cut(s)	217
PspFI	CCCAGC	2 cut(s)	192, 342
PspGI	CCWGG	3 cut(s)	374, 486, 784
PspN4I	GGNNCC	4 cut(s)	83, 294, 373, 420
PspOMI	GGGCCC	1 cut(s)	371
PspPI	GGNCC	7 cut(s)	81, 345, 371, 372, 418, 458, 649
PsuI	RGATCY	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	3 cut(s)	502, 606, 698
RsaNI	GTAC	3 cut(s)	501, 605, 697
SacI	GAGCTC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	110
SatI	GCNGC	7 cut(s)	149, 252, 262, 323, 348, 353, 531
Sau3AI	GATC	5 cut(s)	12, 31, 406, 685, 811
Sau96I	GGNCC	7 cut(s)	81, 345, 371, 372, 418, 458, 649
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	5 cut(s)	75, 339, 376, 488, 786
SduI	GDGCHC	2 cut(s)	228, 375
SfaNI	GCATC	1 cut(s)	517
SfcI	CTRYAG	1 cut(s)	101
SgrAI	CRCCGGYG	1 cut(s)	206
SinI	GGWCC	2 cut(s)	81, 418
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	396, 657, 795, 879
SsiI	CCGC	6 cut(s)	252, 262, 323, 330, 348, 353
SspMI	CTAG	2 cut(s)	548, 860
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	5 cut(s)	73, 337, 374, 486, 784
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	219, 318
TaqI	TCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	396, 657, 795, 879
TatI	WGTACW	2 cut(s)	500, 696
TauI	GCSGC	5 cut(s)	254, 264, 325, 350, 355
TfiI	GAWTC	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	148, 530
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	128
TspGWI	ACGGA	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	81, 418
XagI	CCTNNNNNAGG	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	2 cut(s)	548, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.