Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008523

Physical Location & Seq

Genomic Coordinates Reverse (-)

63150034 .. 63153776

Gene Structure 3743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG379000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAGAGCTTCGCTAACGGAGCCGTTAGGGTTTTGCTGCACAGCAGGAGCATCATCGAAGAGGACGATTTGGACGCTCGCTGGGAACAAGCCACCGGCGAACACGTGGACGAGCTCATCTTCTTGAGCAAGCACAAAGCCGCTTCCAGCCGCCCTGCGCTTACTGTTCACCCCATCGGGGTTCCTCATTTGCGAGACGGCGACGTTTTGCCGCAGGGCGGGAAGCCGGGCTGGGCCGCGCCGCCGAATCCGAGGATTGGGCCCTGGCTCAGGCTCTTGAAGAGAATCGCGCAAGATCACAACTTGGTCCCTGAGTTTGAGGTGACTTTGGAGGCTACACATCATGGACCGATTACAGACACGCCTGCCATGTTCCTGGAGATTGGCAGTACAGATGATTGCTGGAAGAGGCAGGATGCAGCTGAAGTTATGGCTCTATTAGTTTGGGAAGGACTTGGGCTTGGAGGGGGAGCTGCTGTTGGAAACTGGAACGGGGGGAACGATAATAAAAGAGTTCTGCTTGGGATAGGTGGTGGACATTATGTACCTCGTCATATGGATATAGCTCTGAAAGATGATGTCTGGGTGGGCCATCTAATTTCGGGTTATTCGTTACCAATGGAAGATCCGAGCCAGTCCAAGACAGAAACAAATACAAAAGATATCGGTGGAACTTGGAAACAATCAATCAAAGTAGCATTTGAGGCTACGCAATCGGCTTTCCCTGGTGGAGAAATTGTAGCTCATCTTGATCACAAGAGTTTCAAAAGCTGGCAAAAGAATGCTATAACGAGTTTCCTAGAGGAGCAGAACATTACAATTAGCAAACGTGATTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006399 GO:0006450 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0034660 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0051499 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_deacylase

Protein Analysis

280

Amino Acids

30.75

Weight (kDa)

5.89

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_deacylase	PF04414	33 - 274	2.1e-58	D-aminoacyl-tRNA deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03800 AT2G03800
fragaria_vesca	FvH4_4g29300 FvH4_4g29300 FvH4_4g29300
malus_domestica	MD13G1056600.v1.1 MD16G1055500.v1.1 MD16G1055900.v1.1
prunus_persica	Prupe.1G293400_v2.0.a1 Prupe.1G293400_v2.0.a1
pyrus_communis	pycom13g05060 pycom16g04870
rosa_chinensis	RchiOBHm_Chr4g0437351
rosa_laevigata	RLG00000006443
rosa_multiflora	Rmu_sc0004759.1_g000015
rosa_roxburghii	Rroxscaffold_5G00378500
rosa_rugosa	Rorug04G0300200
rosa_samantha	Rh4AG355100 Rh4BG364900 Rh4CG379000 Rh4DG358800
rosa_wichuraiana	Rw4G031120 Rw4G031150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	239, 290
AciI	CCGC	6 cut(s)	141, 151, 212, 219, 237, 242
AclWI	GGATC	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	444
AcvI	CACGTG	1 cut(s)	106
AfaI	GTAC	2 cut(s)	391, 546
AfiI	CCNNNNNNNGG	4 cut(s)	178, 218, 257, 270
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	280, 766
AjnI	CCWGG	3 cut(s)	263, 375, 724
AluBI	AGCT	7 cut(s)	9, 115, 422, 473, 566, 743, 771
AluI	AGCT	7 cut(s)	9, 115, 422, 473, 566, 743, 771
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	3 cut(s)	234, 260, 589
ApaI	GGGCCC	1 cut(s)	264
ApeKI	GCWGC	3 cut(s)	37, 419, 473
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	160, 241, 292
AspS9I	GGNCC	6 cut(s)	234, 260, 261, 307, 347, 589
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	161, 334
AvaII	GGWCC	2 cut(s)	307, 347
BaeGI	GKGCMC	1 cut(s)	264
BanII	GRGCYC	2 cut(s)	117, 264
BbrPI	CACGTG	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	24, 431, 460
BccI	CCATC	2 cut(s)	182, 600
BceAI	ACGGC	2 cut(s)	8, 214
BciT130I	CCWGG	3 cut(s)	265, 377, 726
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	1 cut(s)	800
BisI	GCNGC	8 cut(s)	38, 141, 151, 212, 237, 242, 420, 474
BlsI	GCNGC	8 cut(s)	39, 142, 152, 213, 238, 243, 421, 475
Bme1390I	CCNGG	4 cut(s)	228, 265, 377, 726
Bme18I	GGWCC	2 cut(s)	307, 347
BmgT120I	GGNCC	6 cut(s)	234, 260, 261, 307, 347, 589
BmiI	GGNNCC	4 cut(s)	22, 183, 262, 309
BmrFI	CCNGG	4 cut(s)	228, 265, 377, 726
BmsI	GCATC	2 cut(s)	60, 406
BpmI	CTGGAG	1 cut(s)	398
Bpu10I	CCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	251, 263, 724
BsaXI	ACNNNNNCTCC	4 cut(s)	462, 492, 723, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	178, 218, 257, 270
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	491, 634
BseBI	CCWGG	3 cut(s)	265, 377, 726
BseDI	CCNNGG	3 cut(s)	251, 263, 724
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	4 cut(s)	178, 218, 257, 270
BseMII	CTCAG	2 cut(s)	283, 303
BseNI	ACTGG	2 cut(s)	491, 634
BseRI	GAGGAG	1 cut(s)	818
BseSI	GKGCMC	1 cut(s)	264
BseXI	GCAGC	3 cut(s)	24, 431, 460
BseYI	CCCAGC	2 cut(s)	81, 231
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	239, 290
BshFI	GGCC	3 cut(s)	236, 262, 591
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	96, 227
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	178, 218, 257, 270
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	3 cut(s)	236, 262, 591
Bsp120I	GGGCCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	117, 264
Bsp143I	GATC	3 cut(s)	295, 625, 751
BspACI	CCGC	6 cut(s)	141, 151, 212, 219, 237, 242
BspANI	GGCC	3 cut(s)	236, 262, 591
BspCNI	CTCAG	2 cut(s)	282, 304
BspFNI	CGCG	2 cut(s)	239, 290
BspLI	GGNNCC	4 cut(s)	22, 183, 262, 309
BspPI	GGATC	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	491, 634
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	3 cut(s)	251, 263, 724
BssMI	GATC	3 cut(s)	295, 625, 751
Bst2UI	CCWGG	3 cut(s)	265, 377, 726
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	3 cut(s)	54, 275, 401
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	79, 131, 366, 773
BstDEI	CTNAG	2 cut(s)	269, 312
BstENI	CCTNNNNNAGG	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	2 cut(s)	239, 290
BstHHI	GCGC	3 cut(s)	160, 241, 292
BstKTI	GATC	3 cut(s)	298, 628, 754
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	3 cut(s)	295, 625, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 704
BstNI	CCWGG	3 cut(s)	265, 377, 726
BstSCI	CCNGG	4 cut(s)	226, 263, 375, 724
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	2 cut(s)	239, 290
BstV1I	GCAGC	3 cut(s)	24, 431, 460
BstX2I	RGATCY	1 cut(s)	625
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	3 cut(s)	236, 262, 591
BtsCI	GGATG	1 cut(s)	421
Cac8I	GCNNGC	4 cut(s)	79, 131, 366, 773
CfoI	GCGC	3 cut(s)	160, 241, 292
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	6 cut(s)	234, 260, 261, 307, 347, 589
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	390, 545
CviAII	CATG	2 cut(s)	344, 370
CviQI	GTAC	2 cut(s)	390, 545
DdeI	CTNAG	2 cut(s)	269, 312
DpnI	GATC	3 cut(s)	297, 627, 753
DpnII	GATC	3 cut(s)	295, 625, 751
Eam1104I	CTCTTC	3 cut(s)	54, 275, 401
EarI	CTCTTC	3 cut(s)	54, 275, 401
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	2 cut(s)	117, 264
Eco32I	GATATC	1 cut(s)	664
Eco47I	GGWCC	2 cut(s)	307, 347
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	444
Eco72I	CACGTG	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	3 cut(s)	263, 375, 724
EcoRV	GATATC	1 cut(s)	664
EcoT38I	GRGCYC	2 cut(s)	117, 264
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	2 cut(s)	347, 373
FaiI	YATR	8 cut(s)	345, 371, 431, 543, 555, 557, 563, 788
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	343, 369
FauI	CCCGC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	555
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	8 cut(s)	38, 141, 151, 212, 237, 242, 420, 474
FokI	GGATG	1 cut(s)	428
FriOI	GRGCYC	2 cut(s)	117, 264
Fsp4HI	GCNGC	8 cut(s)	38, 141, 151, 212, 237, 242, 420, 474
FspBI	CTAG	1 cut(s)	800
GlaI	GCGC	3 cut(s)	159, 240, 291
GluI	GCNGC	8 cut(s)	38, 141, 151, 212, 237, 242, 420, 474
GsaI	CCCAGC	2 cut(s)	85, 235
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	3 cut(s)	236, 262, 591
HapII	CCGG	2 cut(s)	96, 227
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	3 cut(s)	160, 241, 292
Hin1II	CATG	2 cut(s)	347, 373
Hin6I	GCGC	3 cut(s)	158, 239, 290
HinP1I	GCGC	3 cut(s)	158, 239, 290
HinfI	GANTC	2 cut(s)	247, 285
HpaII	CCGG	2 cut(s)	96, 227
HphI	GGTGA	2 cut(s)	161, 334
Hpy166II	GTNNAC	3 cut(s)	109, 169, 536
Hpy188I	TCNGA	4 cut(s)	252, 570, 630, 842
Hpy188III	TCNNGA	3 cut(s)	124, 277, 749
Hpy8I	GTNNAC	3 cut(s)	109, 169, 536
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	3 cut(s)	105, 204, 829
HpyCH4V	TGCA	2 cut(s)	40, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 704
HpyF3I	CTNAG	2 cut(s)	269, 312
HpySE526I	ACGT	3 cut(s)	105, 204, 829
Hsp92II	CATG	2 cut(s)	347, 373
HspAI	GCGC	3 cut(s)	158, 239, 290
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	3 cut(s)	295, 625, 751
LmnI	GCTCC	4 cut(s)	20, 48, 470, 805
Lsp1109I	GCAGC	3 cut(s)	24, 431, 460
LweI	GCATC	2 cut(s)	60, 406
MaeI	CTAG	1 cut(s)	800
MaeII	ACGT	3 cut(s)	105, 204, 829
MaeIII	GTNAC	2 cut(s)	322, 612
MalI	GATC	3 cut(s)	297, 627, 753
MboI	GATC	3 cut(s)	295, 625, 751
MboII	GAAGA	7 cut(s)	16, 71, 112, 292, 418, 635, 829
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	117, 264
MluCI	AATT	3 cut(s)	597, 735, 819
MmeI	TCCRAC	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	2 cut(s)	96, 227
MspR9I	CCNGG	4 cut(s)	228, 265, 377, 726
Mva1269I	GAATGC	1 cut(s)	787
MvaI	CCWGG	3 cut(s)	265, 377, 726
MvnI	CGCG	2 cut(s)	239, 290
MwoI	GCNNNNNNNGC	2 cut(s)	20, 704
NciI	CCSGG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	555
NdeII	GATC	3 cut(s)	295, 625, 751
NlaIII	CATG	2 cut(s)	347, 373
NlaIV	GGNNCC	4 cut(s)	22, 183, 262, 309
NmuCI	GTSAC	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	3 cut(s)	63, 498, 608
PctI	GAATGC	1 cut(s)	787
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	247, 285
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	8 cut(s)	39, 142, 152, 213, 238, 243, 421, 475
PmaCI	CACGTG	1 cut(s)	106
PmlI	CACGTG	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	263, 375, 724
PspCI	CACGTG	1 cut(s)	106
PspFI	CCCAGC	2 cut(s)	81, 231
PspGI	CCWGG	3 cut(s)	263, 375, 724
PspN4I	GGNNCC	4 cut(s)	22, 183, 262, 309
PspOMI	GGGCCC	1 cut(s)	260
PspPI	GGNCC	6 cut(s)	234, 260, 261, 307, 347, 589
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	391, 546
RsaNI	GTAC	2 cut(s)	390, 545
SacI	GAGCTC	1 cut(s)	117
SatI	GCNGC	8 cut(s)	38, 141, 151, 212, 237, 242, 420, 474
Sau3AI	GATC	3 cut(s)	295, 625, 751
Sau96I	GGNCC	6 cut(s)	234, 260, 261, 307, 347, 589
ScrFI	CCNGG	4 cut(s)	228, 265, 377, 726
SduI	GDGCHC	2 cut(s)	117, 264
SfaNI	GCATC	2 cut(s)	60, 406
SgrAI	CRCCGGYG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	307, 347
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	3 cut(s)	597, 735, 819
SsiI	CCGC	6 cut(s)	141, 151, 212, 219, 237, 242
SspMI	CTAG	1 cut(s)	800
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	226, 263, 375, 724
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	3 cut(s)	108, 207, 832
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	364
TasI	AATT	3 cut(s)	597, 735, 819
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	5 cut(s)	143, 153, 214, 239, 244
TfiI	GAWTC	2 cut(s)	247, 285
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	37, 419, 473
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	33
VpaK11BI	GGWCC	2 cut(s)	307, 347
XagI	CCTNNNNNAGG	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.