Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004856

Physical Location & Seq

Genomic Coordinates Forward (+)

29133920 .. 29136514

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G294000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGATAAAAAGGATGACCCGAAGGACCACGAATTCGGGGAGGTGAAGAAGGAGAAGCCGTTAAACAGTAAGATCAGGTACTTGAGGTACACCGGAGCCATCAAAGCTGAAATGTTGAAGGGTTTGATTGCTGGAGGGATCAAAGCTGAAAAGTTGAAGACTTTTATAAATTGGAGCATAAAAAACGAGAAGCTAAAGGGTTTGGTGATTTCTAGGACACAACTGGCACGGCTGAAATTGTGGGCGGCACGAGCCACAACCGTGCTGCTACTGTGGGCTATAGCAATGCAGCTCAAGGCATTGGGAGAGAACTTGCTGCCATGGATATCTAAAAGCTCTTTTCCACCACAAAGGATTTATGAGAACAATGGATATTTGATGGTTTCATCCAATGGAGGACTAAATCAGATGCGATCTGGTATATGTGACATGGTAGCTATTGCAAGATATATGAATGTCACGCTTATAGTTCCTGAATTGGATAATACCTCCTTCTGGAACGACCACAGTCAATTTGAAGACATATTTGATGTGGATTATTTCATTGCATCATTGAGAGATGAGGTTCGGATATTGAAAGAATTGCCTCCTGAGCAGAAGAAAAAAGTGGAATTAGAATCCCTTTATTCCATGCCCCCCATTAGTTGGTCTAACATGACATACTACTATAACACGATCATTCCTCGCATGAAAAAATACGAAATTGTGCACTTCACTAAAACTGATGCTAGGCTTGCCAATAATGGGATTCCTGAAGAGGTTCAAAAGCTCCGGTGCCGAGCAAATTACCAAGCTCTGAGATTTGCTCCTCCAATTGAGGAGCTGGGCAAGAAAATTGTTCGGATTCTCAGGGAAAGAGGCCCTTTCTTGGTCCTTCATCTCAGATATGAAATGGACATGGTAGCATTCTCTGGATGCACTGAAGGTTGCAATGAAGAAGAGATTGAAGAGACCACCAAAATGAGATATGCATACCCCTGGTGGAAAGAGAAGGAAATAGATTCAGAGAAGAAAAGGAAAGCAGGATTGTGCCCTTTAACCCCTGAAGAAACTGCATTAGCGTTGAGGGCACTTGACATTGATCCTAATATCCAAGTCTATATTGCTGCTGGAGACATATACAGGGCTGAGAGGAGAATGGCACCTCTGAAAGAAGCTTTCCCAAACTTGGTGAAAAAGGAGACATTGGTGGAAGCATCAGATCTTGTGCCCTTCCAAAACCATTCAAACCAAATGGCAGCATTGGATTATTATGTGTCGATAGAAAGTGACATTTTTGTGCCAACATATGGAGGCAACATGGCAAAAGTAGTGGAAGGGCACAGAAGATACTTGGGGTACAAGAAAACCATTCTTCTAGACAGAAGGGTTCTGGTTGATCTGATAGACCAGTACAACAATGGAACTCTGAGCTGGAACCAATTCTCAGTTAGAGTGAAGGCTGCTCATGCCGACCGCATGGGAAACCCTACTACAAGATTGGAGGTTCCAGGAAAACCCAAAGAAGAAGATTACTTCCATTCAAACCCTCAGGAGTGTTTGCCACTTGTTAACGATGAAGATATGAAACAAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

527

Amino Acids

60.73

Weight (kDa)

8.25

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29240 FvH4_4g29250 FvH4_5g13360 FvH4_5g13360
prunus_persica	Prupe.1G294000_v2.0.a1 Prupe.1G294100_v2.0.a1
pyrus_communis	pycom06g18400
rosa_chinensis	RchiOBHm_Chr4g0437291 RchiOBHm_Chr4g0437301
rosa_laevigata	RLG00000006448 RLG00000006449
rosa_multiflora	Rmu_co8522681.1_g000002 Rmu_sc0004339.1_g000032 Rmu_sc0004339.1_g000033
rosa_roxburghii	Rroxscaffold_5G00378430 Rroxscaffold_5G00378450
rosa_rugosa	Rorug04G0299300 Rorug04G0299300 Rorug04G0299300 Rorug04G0299400
rosa_samantha	Rh4AG354100 Rh4AG354300 Rh4BG364000 Rh4BG364100 Rh4CG378300 Rh4CG378500 Rh4DG358000 Rh4DG358100 Rh7BG061000
rosa_wichuraiana	Rw4G031060 Rw4G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	167
AccB1I	GGYRCC	2 cut(s)	774, 1141
AccB7I	CCANNNNNTGG	2 cut(s)	645, 1289
AciI	CCGC	2 cut(s)	245, 1456
AclWI	GGATC	2 cut(s)	146, 1076
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	3 cut(s)	774, 942, 1065
AfaI	GTAC	4 cut(s)	80, 89, 1340, 1394
AfiI	CCNNNNNNNGG	6 cut(s)	495, 645, 744, 868, 1168, 1289
AgsI	TTSAA	8 cut(s)	118, 157, 518, 577, 764, 947, 1227, 1524
AjnI	CCWGG	2 cut(s)	977, 1489
AleI	CACNNNNGTG	1 cut(s)	260
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	3 cut(s)	944, 1107, 1175
Alw44I	GTGCAC	1 cut(s)	707
AlwI	GGATC	2 cut(s)	146, 1076
AoxI	GGCC	1 cut(s)	859
ApaLI	GTGCAC	1 cut(s)	707
ApeKI	GCWGC	6 cut(s)	265, 289, 316, 1106, 1238, 1442
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
Asp700I	GAANNNNTTC	2 cut(s)	759, 1421
AspS9I	GGNCC	3 cut(s)	25, 860, 871
AsuHPI	GGTGA	3 cut(s)	55, 217, 1183
AvaII	GGWCC	2 cut(s)	25, 871
AxyI	CCTNAGG	1 cut(s)	1530
BaeGI	GKGCMC	5 cut(s)	711, 1034, 1072, 1212, 1323
BanI	GGYRCC	2 cut(s)	774, 1141
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	164, 525
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	6 cut(s)	252, 301, 303, 1093, 1250, 1429
BccI	CCATC	2 cut(s)	107, 373
BceAI	ACGGC	2 cut(s)	43, 245
BciT130I	CCWGG	2 cut(s)	979, 1491
BcoDI	GTCTC	3 cut(s)	944, 1107, 1175
BfaI	CTAG	4 cut(s)	213, 729, 1358, 1579
BfmI	CTRYAG	1 cut(s)	279
BglII	AGATCT	1 cut(s)	1201
BisI	GCNGC	7 cut(s)	246, 266, 290, 317, 1107, 1239, 1443
BlsI	GCNGC	7 cut(s)	247, 267, 291, 318, 1108, 1240, 1444
Bme1390I	CCNGG	2 cut(s)	979, 1491
Bme18I	GGWCC	2 cut(s)	25, 871
BmgT120I	GGNCC	3 cut(s)	25, 860, 871
BmiI	GGNNCC	5 cut(s)	97, 776, 1143, 1418, 1488
BmrFI	CCNGG	2 cut(s)	979, 1491
BmsI	GCATC	5 cut(s)	399, 557, 715, 905, 1205
BoxI	GACNNNNGTC	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	164, 525
BplI	GAGNNNNNCTC	2 cut(s)	790, 822
BpmI	CTGGAG	2 cut(s)	153, 1131
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	103, 278
BsaI	GGTCTC	1 cut(s)	944
BsaJI	CCNNGG	2 cut(s)	320, 977
BsaWI	WCCGGW	2 cut(s)	92, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	6 cut(s)	495, 645, 744, 868, 1168, 1289
Bse1I	ACTGG	2 cut(s)	228, 1390
Bse21I	CCTNAGG	1 cut(s)	1530
Bse3DI	GCAATG	3 cut(s)	291, 543, 937
BseBI	CCWGG	2 cut(s)	979, 1491
BseDI	CCNNGG	2 cut(s)	320, 977
BseGI	GGATG	3 cut(s)	19, 386, 920
BseLI	CCNNNNNNNGG	6 cut(s)	495, 645, 744, 868, 1168, 1289
BseMI	GCAATG	3 cut(s)	291, 543, 937
BseMII	CTCAG	8 cut(s)	582, 788, 862, 895, 1119, 1400, 1440, 1544
BseNI	ACTGG	2 cut(s)	228, 1390
BseRI	GAGGAG	3 cut(s)	798, 833, 1147
BseSI	GKGCMC	5 cut(s)	711, 1034, 1072, 1212, 1323
BseXI	GCAGC	6 cut(s)	252, 301, 303, 1093, 1250, 1429
BseYI	CCCAGC	1 cut(s)	823
Bsh1285I	CGRYCG	1 cut(s)	1456
BshFI	GGCC	1 cut(s)	861
BshNI	GGYRCC	2 cut(s)	774, 1141
BsiEI	CGRYCG	1 cut(s)	1456
BsiHKAI	GWGCWC	1 cut(s)	711
BsiSI	CCGG	2 cut(s)	93, 772
BslI	CCNNNNNNNGG	6 cut(s)	495, 645, 744, 868, 1168, 1289
BsmAI	GTCTC	3 cut(s)	944, 1107, 1175
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	1 cut(s)	861
Bso31I	GGTCTC	1 cut(s)	944
Bsp1286I	GDGCHC	5 cut(s)	711, 1034, 1072, 1212, 1323
Bsp143I	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	245, 1456
BspANI	GGCC	1 cut(s)	861
BspCNI	CTCAG	8 cut(s)	583, 789, 861, 894, 1120, 1401, 1439, 1543
BspLI	GGNNCC	5 cut(s)	97, 776, 1143, 1418, 1488
BspPI	GGATC	2 cut(s)	146, 1076
BspT107I	GGYRCC	2 cut(s)	774, 1141
BspTNI	GGTCTC	1 cut(s)	944
BsrDI	GCAATG	3 cut(s)	291, 543, 937
BsrI	ACTGG	2 cut(s)	228, 1390
BssECI	CCNNGG	2 cut(s)	320, 977
BssMI	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
BssSI	CACGAG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	979, 1491
Bst4CI	ACNGT	4 cut(s)	68, 262, 273, 509
Bst6I	CTCTTC	3 cut(s)	750, 933, 942
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	8 cut(s)	591, 797, 848, 881, 1128, 1409, 1426, 1530
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	3 cut(s)	19, 386, 920
BstKTI	GATC	7 cut(s)	75, 141, 416, 678, 1084, 1204, 1381
BstMAI	GTCTC	3 cut(s)	944, 1107, 1175
BstMBI	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
BstMCI	CGRYCG	1 cut(s)	1456
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 251, 592, 734, 1067, 1448
BstNI	CCWGG	2 cut(s)	979, 1491
BstPAI	GACNNNNGTC	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	977, 1489
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	5 cut(s)	711, 1034, 1072, 1212, 1323
BstV1I	GCAGC	6 cut(s)	252, 301, 303, 1093, 1250, 1429
BstV2I	GAAGAC	2 cut(s)	164, 525
BstX2I	RGATCY	1 cut(s)	1201
BstYI	RGATCY	1 cut(s)	1201
Bsu36I	CCTNAGG	1 cut(s)	1530
BsuRI	GGCC	1 cut(s)	861
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	19, 386, 920
BtsIMutI	CAGTG	1 cut(s)	918
Cac8I	GCNNGC	1 cut(s)	735
Cfr13I	GGNCC	3 cut(s)	25, 860, 871
Csp6I	GTAC	4 cut(s)	79, 88, 1339, 1393
CspCI	CAANNNNNGTGG	2 cut(s)	1293, 1328
CviAII	CATG	9 cut(s)	321, 430, 631, 655, 688, 898, 1300, 1448, 1459
CviQI	GTAC	4 cut(s)	79, 88, 1339, 1393
DdeI	CTNAG	8 cut(s)	591, 797, 848, 881, 1128, 1409, 1426, 1530
DpnI	GATC	7 cut(s)	74, 140, 415, 677, 1083, 1203, 1380
DpnII	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
Eam1104I	CTCTTC	3 cut(s)	750, 933, 942
EarI	CTCTTC	3 cut(s)	750, 933, 942
Eco130I	CCWWGG	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	944
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	25, 871
Eco57I	CTGAAG	3 cut(s)	774, 942, 1065
Eco81I	CCTNAGG	1 cut(s)	1530
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	977, 1489
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	320
EcoT22I	ATGCAT	1 cut(s)	973
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	9 cut(s)	324, 433, 634, 658, 691, 901, 1303, 1451, 1462
FalI	AAGNNNNNCTT	2 cut(s)	847, 879
FatI	CATG	9 cut(s)	320, 429, 630, 654, 687, 897, 1299, 1447, 1458
FauNDI	CATATG	1 cut(s)	1288
Fnu4HI	GCNGC	7 cut(s)	246, 266, 290, 317, 1107, 1239, 1443
FokI	GGATG	3 cut(s)	26, 373, 927
Fsp4HI	GCNGC	7 cut(s)	246, 266, 290, 317, 1107, 1239, 1443
FspBI	CTAG	4 cut(s)	213, 729, 1358, 1579
GluI	GCNGC	7 cut(s)	246, 266, 290, 317, 1107, 1239, 1443
GsaI	CCCAGC	1 cut(s)	827
GsuI	CTGGAG	2 cut(s)	153, 1131
HaeIII	GGCC	1 cut(s)	861
HapII	CCGG	2 cut(s)	93, 772
Hin1II	CATG	9 cut(s)	324, 433, 634, 658, 691, 901, 1303, 1451, 1462
HincII	GTYRAC	1 cut(s)	1552
HindII	GTYRAC	1 cut(s)	1552
HindIII	AAGCTT	1 cut(s)	1155
HinfI	GANTC	4 cut(s)	617, 748, 844, 1001
HpaI	GTTAAC	1 cut(s)	1552
HpaII	CCGG	2 cut(s)	93, 772
HphI	GGTGA	3 cut(s)	55, 217, 1183
Hpy166II	GTNNAC	3 cut(s)	90, 709, 1552
Hpy188III	TCNNGA	7 cut(s)	473, 496, 590, 752, 912, 1358, 1532
Hpy8I	GTNNAC	3 cut(s)	90, 709, 1552
HpyCH4III	ACNGT	4 cut(s)	68, 262, 273, 509
HpyCH4V	TGCA	8 cut(s)	289, 443, 548, 709, 918, 930, 971, 1055
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 251, 592, 734, 1067, 1448
HpyF3I	CTNAG	8 cut(s)	591, 797, 848, 881, 1128, 1409, 1426, 1530
Hsp92II	CATG	9 cut(s)	324, 433, 634, 658, 691, 901, 1303, 1451, 1462
KspAI	GTTAAC	1 cut(s)	1552
Kzo9I	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
LmnI	GCTCC	5 cut(s)	95, 174, 774, 811, 820
Lsp1109I	GCAGC	6 cut(s)	252, 301, 303, 1093, 1250, 1429
LweI	GCATC	5 cut(s)	399, 557, 715, 905, 1205
MaeI	CTAG	4 cut(s)	213, 729, 1358, 1579
MaeIII	GTNAC	3 cut(s)	425, 457, 1268
MalI	GATC	7 cut(s)	74, 140, 415, 677, 1083, 1203, 1380
MboI	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	1 cut(s)	1201
MhlI	GDGCHC	5 cut(s)	711, 1034, 1072, 1212, 1323
Mph1103I	ATGCAT	1 cut(s)	973
MroXI	GAANNNNTTC	2 cut(s)	759, 1421
MseI	TTAA	3 cut(s)	62, 1037, 1551
MslI	CAYNNNNRTG	3 cut(s)	260, 959, 1277
MspI	CCGG	2 cut(s)	93, 772
MspR9I	CCNGG	2 cut(s)	979, 1491
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	1 cut(s)	905
MvaI	CCWGG	2 cut(s)	979, 1491
MwoI	GCNNNNNNNGC	6 cut(s)	104, 251, 592, 734, 1067, 1448
NcoI	CCATGG	1 cut(s)	320
NdeI	CATATG	1 cut(s)	1288
NdeII	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
NlaIII	CATG	9 cut(s)	324, 433, 634, 658, 691, 901, 1303, 1451, 1462
NlaIV	GGNNCC	5 cut(s)	97, 776, 1143, 1418, 1488
NmeAIII	GCCGAG	1 cut(s)	803
NmuCI	GTSAC	3 cut(s)	425, 457, 1268
NsiI	ATGCAT	1 cut(s)	973
OliI	CACNNNNGTG	1 cut(s)	260
PctI	GAATGC	1 cut(s)	905
PdmI	GAANNNNTTC	2 cut(s)	759, 1421
PfeI	GAWTC	4 cut(s)	617, 748, 844, 1001
PflMI	CCANNNNNTGG	2 cut(s)	645, 1289
PfoI	TCCNGGA	1 cut(s)	1489
PkrI	GCNGC	7 cut(s)	247, 267, 291, 318, 1108, 1240, 1444
PshAI	GACNNNNGTC	1 cut(s)	507
PsiI	TTATAA	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	977, 1489
PspFI	CCCAGC	1 cut(s)	823
PspGI	CCWGG	2 cut(s)	977, 1489
PspN4I	GGNNCC	5 cut(s)	97, 776, 1143, 1418, 1488
PspPI	GGNCC	3 cut(s)	25, 860, 871
PsuI	RGATCY	1 cut(s)	1201
RsaI	GTAC	4 cut(s)	80, 89, 1340, 1394
RsaNI	GTAC	4 cut(s)	79, 88, 1339, 1393
RseI	CAYNNNNRTG	3 cut(s)	260, 959, 1277
SaqAI	TTAA	3 cut(s)	62, 1037, 1551
SatI	GCNGC	7 cut(s)	246, 266, 290, 317, 1107, 1239, 1443
Sau3AI	GATC	7 cut(s)	72, 138, 413, 675, 1081, 1201, 1378
Sau96I	GGNCC	3 cut(s)	25, 860, 871
ScrFI	CCNGG	2 cut(s)	979, 1491
SduI	GDGCHC	5 cut(s)	711, 1034, 1072, 1212, 1323
SfaNI	GCATC	5 cut(s)	399, 557, 715, 905, 1205
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	2 cut(s)	25, 871
SmiMI	CAYNNNNRTG	3 cut(s)	260, 959, 1277
SmlI	CTYRAG	2 cut(s)	82, 293
SmoI	CTYRAG	2 cut(s)	82, 293
SsiI	CCGC	2 cut(s)	245, 1456
SspMI	CTAG	4 cut(s)	213, 729, 1358, 1579
StyD4I	CCNGG	2 cut(s)	977, 1489
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	4 cut(s)	68, 262, 273, 509
TaqI	TCGA	1 cut(s)	1259
TatI	WGTACW	1 cut(s)	1392
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	4 cut(s)	617, 748, 844, 1001
Tru1I	TTAA	3 cut(s)	62, 1037, 1551
Tru9I	TTAA	3 cut(s)	62, 1037, 1551
TscAI	CASTG	1 cut(s)	925
TseFI	GTSAC	3 cut(s)	425, 457, 1268
TseI	GCWGC	6 cut(s)	265, 289, 316, 1106, 1238, 1442
Tsp45I	GTSAC	3 cut(s)	425, 457, 1268
TspDTI	ATGAA	9 cut(s)	375, 467, 532, 704, 866, 903, 948, 1572, 1580
TspRI	CASTG	1 cut(s)	925
Van91I	CCANNNNNTGG	2 cut(s)	645, 1289
VneI	GTGCAC	1 cut(s)	707
VpaK11BI	GGWCC	2 cut(s)	25, 871
XapI	RAATTY	1 cut(s)	32
XbaI	TCTAGA	1 cut(s)	1357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1397
XmnI	GAANNNNTTC	2 cut(s)	759, 1421
XspI	CTAG	4 cut(s)	213, 729, 1358, 1579
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.