Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004856

Physical Location & Seq

Genomic Coordinates Forward (+)

29140633 .. 29143243

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G294100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGGACAAAACAAAAGTTGCAGGTTTTGAAGAGTCTGAGTTTGGAGAGGCAAAGGTGAAGCAATATAAAATGGAGCACTATCTGAATCACTTTGGAGGAATCAAAGTGGACAGAATTGTAGGAGTGTTCAATTTCAAAGGGGAGAGGCTAACGAGCTTGATCATTGCGCAGCCGAAATTATGCAGACTCAAGCTCTTTGCCTTTGCTGCCACAACCATTTTGCTTCTCTCTGTCTGTGCAGTGCAGTTGAGCACGCTCAGCGATATCATGAAGCCCCGGGTCTTGATGTTCCGCGCTAACTCTCAGGTTATTGCTCCGCCTCAACCACAAACAACTGAAACTGAAAGGGATTATGAGAATAATGGATATCTGATGGTCTCATCAAATGGAGGGTTGAATCAAATGCGAGCTGGTATTTGTGACATGGTAGCTATTGCAAGGTTTATGAATGTCACACTTATAGTTCCTGAGTTGGATAATACCTCCTTTTGGAATGATCGCAGTCGGTTTGAGGACATATTTGATGTGGATTACTTCATATCATCGCTGAGAGATGAGGTTCGGATATTGAAAGTTCTGCCTCATAACCAGATCAGGAGAGTGGAGATAGCTACTCTCTATTCCATGCCACCTGCTAGTTGGTCTAACATGTCATATTACGACCAAGTGATTCTTCCTCGGATAAAGAAGTATGGAGTTCTGCATTTTACTAAAACTGATGCCAGGCTTGCAAATAACGGGATCCCGAAAGAGGTTCAGGAACTGCGGTGCAAAGCGAATTACAAGGCTCTGAGATTCACTCCTCCCATTGAGGAATTGGGGAAGAAGATTGTTAGGATTCTGAGGGAAAAGGGTCCATTCTTAGTTCTTCATCTGAGATATGAAATGGACATGTTGGCATTTTCTGGTTGCACTGAGGGTTGCAATGAGAAAGAAATTGAAGAATTGACAAATATGAGGTTTGCTTATCCATGGTGGAAAGAGAAAATAATAGATTCTGACAAGAAAAGAAAAGCTGGGTCATGCCCTTTAACTCCTGAGGAAACTGCCCTTGCATTGAGGGCATTGGATATTGATCCTGGCATCCAAGTTTACATCGCCGCAGGCGATATATATGGAGGAGAAAGGAGAATGACATCTCTGAGATTAGCCTTTCCCCATATGGTTAAAAAGGAATCATTGCTCAGAGCCTCAGACCTTGAGCCCTTCCGCAAACATTCGAACCAAATGGCGGCATTAGATTACATTGTGTCACTGGAAAGTGACATCTTTGTTCCTACTTATGGAGGAAACATGGCAAGAGTTGTTGAAGGCCATAGAAGGTACTTGGGATTCAGGACAACAATTCGTGTAGACAGAATGCTTCTGGTGGATTTGATAGACCAGTACAAGAACGGAACTCTGAGCTGGGATGAATTTTCCCAGGCAGTGAAAACAGGGCATGCTGATCGCATGGGCATCCCAACTCAAAGATTGGAGATTCCTGGCAAGCCCAAGGAGGAAGAAAATTTCTATAACAACCCAGAGGAATGTTTGCCACCAATTCCTAAAAAACCAAAAAGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

523

Amino Acids

59.79

Weight (kDa)

8.77

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29240 FvH4_4g29250 FvH4_5g13360 FvH4_5g13360
prunus_persica	Prupe.1G294000_v2.0.a1 Prupe.1G294100_v2.0.a1
pyrus_communis	pycom06g18400
rosa_chinensis	RchiOBHm_Chr4g0437291 RchiOBHm_Chr4g0437301
rosa_laevigata	RLG00000006448 RLG00000006449
rosa_multiflora	Rmu_co8522681.1_g000002 Rmu_sc0004339.1_g000032 Rmu_sc0004339.1_g000033
rosa_roxburghii	Rroxscaffold_5G00378430 Rroxscaffold_5G00378450
rosa_rugosa	Rorug04G0299300 Rorug04G0299300 Rorug04G0299300 Rorug04G0299400
rosa_samantha	Rh4AG354100 Rh4AG354300 Rh4BG364000 Rh4BG364100 Rh4CG378300 Rh4CG378500 Rh4DG358000 Rh4DG358100 Rh7BG061000
rosa_wichuraiana	Rw4G031060 Rw4G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	640
Acc16I	TGCGCA	1 cut(s)	168
Acc36I	ACCTGC	2 cut(s)	11, 640
AccI	GTMKAC	1 cut(s)	1353
AccII	CGCG	1 cut(s)	294
AciI	CCGC	6 cut(s)	292, 317, 766, 1101, 1210, 1232
AclWI	GGATC	3 cut(s)	736, 749, 1070
AcsI	RAATTY	2 cut(s)	1415, 1507
AfaI	GTAC	2 cut(s)	1325, 1388
AfiI	CCNNNNNNNGG	4 cut(s)	489, 751, 1231, 1283
AflIII	ACRYGT	2 cut(s)	648, 891
AgsI	TTSAA	7 cut(s)	29, 130, 136, 397, 571, 941, 1310
AjnI	CCWGG	4 cut(s)	722, 1078, 1422, 1483
AjuI	GAANNNNNNNTTGG	2 cut(s)	657, 689
AluBI	AGCT	7 cut(s)	156, 193, 410, 431, 611, 1016, 1407
AluI	AGCT	7 cut(s)	156, 193, 410, 431, 611, 1016, 1407
Alw21I	GWGCWC	2 cut(s)	78, 254
Alw26I	GTCTC	1 cut(s)	382
AlwI	GGATC	3 cut(s)	736, 749, 1070
AlwNI	CAGNNNCTG	1 cut(s)	763
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	1 cut(s)	1312
ApeKI	GCWGC	2 cut(s)	169, 206
ApoI	RAATTY	2 cut(s)	1415, 1507
AspLEI	GCGC	2 cut(s)	169, 296
AspS9I	GGNCC	1 cut(s)	854
AsuC2I	CCSGG	2 cut(s)	277, 278
AsuHPI	GGTGA	1 cut(s)	67
AsuII	TTCGAA	1 cut(s)	1220
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	854
AxyI	CCTNAGG	1 cut(s)	1038
BamHI	GGATCC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	1206
Bbv12I	GWGCWC	2 cut(s)	78, 254
BbvI	GCAGC	2 cut(s)	181, 193
BccI	CCATC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	1430, 1464
BciT130I	CCWGG	4 cut(s)	724, 1080, 1424, 1485
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	2 cut(s)	277, 278
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	636
BfuAI	ACCTGC	2 cut(s)	11, 640
BisI	GCNGC	4 cut(s)	170, 207, 1101, 1233
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	4 cut(s)	171, 208, 1102, 1234
Bme1390I	CCNGG	6 cut(s)	277, 278, 724, 1080, 1424, 1485
Bme18I	GGWCC	1 cut(s)	854
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	854
BmiI	GGNNCC	2 cut(s)	743, 855
BmrFI	CCNGG	6 cut(s)	277, 278, 724, 1080, 1424, 1485
BmsI	GCATC	3 cut(s)	709, 1092, 1467
BplI	GAGNNNNNCTC	2 cut(s)	784, 816
Bpu1102I	GCTNAGC	1 cut(s)	257
Bpu14I	TTCGAA	1 cut(s)	1220
BpuEI	CTTGAG	2 cut(s)	173, 1220
BpuMI	CCSGG	2 cut(s)	277, 278
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	6 cut(s)	275, 276, 677, 971, 1422, 1494
Bsc4I	CCNNNNNNNGG	4 cut(s)	489, 751, 1231, 1283
Bse1I	ACTGG	2 cut(s)	1260, 1384
Bse21I	CCTNAGG	1 cut(s)	1038
Bse3DI	GCAATG	3 cut(s)	162, 931, 1178
Bse8I	GATNNNNATC	1 cut(s)	1074
BseBI	CCWGG	4 cut(s)	724, 1080, 1424, 1485
BseDI	CCNNGG	6 cut(s)	275, 276, 677, 971, 1422, 1494
BseGI	GGATG	3 cut(s)	1083, 1417, 1458
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	4 cut(s)	489, 751, 1231, 1283
BseMI	GCAATG	3 cut(s)	162, 931, 1178
BseNI	ACTGG	2 cut(s)	1260, 1384
BseRI	GAGGAG	2 cut(s)	792, 1134
BseXI	GCAGC	2 cut(s)	181, 193
BseYI	CCCAGC	2 cut(s)	1016, 1407
BsgI	GTGCAG	2 cut(s)	258, 263
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	1314
BsiHKAI	GWGCWC	2 cut(s)	78, 254
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	4 cut(s)	489, 751, 1231, 1283
BsmAI	GTCTC	1 cut(s)	382
BsmI	GAATGC	1 cut(s)	1365
BsnI	GGCC	1 cut(s)	1314
Bso31I	GGTCTC	1 cut(s)	382
BsoBI	CYCGRG	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	1220
Bsp1286I	GDGCHC	3 cut(s)	78, 254, 1206
Bsp143I	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
Bsp1720I	GCTNAGC	1 cut(s)	257
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	6 cut(s)	292, 317, 766, 1101, 1210, 1232
BspANI	GGCC	1 cut(s)	1314
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	743, 855
BspMI	ACCTGC	2 cut(s)	11, 640
BspPI	GGATC	3 cut(s)	736, 749, 1070
BspT104I	TTCGAA	1 cut(s)	1220
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	3 cut(s)	162, 931, 1178
BsrI	ACTGG	2 cut(s)	1260, 1384
BssECI	CCNNGG	6 cut(s)	275, 276, 677, 971, 1422, 1494
BssMI	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
BssT1I	CCWWGG	2 cut(s)	971, 1494
Bst2UI	CCWGG	4 cut(s)	724, 1080, 1424, 1485
Bst6I	CTCTTC	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	1220
BstC8I	GCNNGC	6 cut(s)	254, 408, 729, 1105, 1443, 1490
BstDSI	CCRYGG	1 cut(s)	971
BstF5I	GGATG	3 cut(s)	1083, 1417, 1458
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	2 cut(s)	169, 296
BstKTI	GATC	6 cut(s)	162, 499, 594, 744, 1078, 1450
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 258, 728, 1061
BstNI	CCWGG	4 cut(s)	724, 1080, 1424, 1485
BstNSI	RCATGY	3 cut(s)	652, 895, 1445
BstSCI	CCNGG	6 cut(s)	275, 276, 722, 1078, 1422, 1483
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	2 cut(s)	181, 193
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	1038
BsuRI	GGCC	1 cut(s)	1314
BtgI	CCRYGG	1 cut(s)	971
BtgZI	GCGATG	2 cut(s)	528, 1081
BtsCI	GGATG	3 cut(s)	1083, 1417, 1458
BtsI	GCAGTG	2 cut(s)	246, 1434
BtsIMutI	CAGTG	4 cut(s)	246, 912, 1253, 1434
BveI	ACCTGC	2 cut(s)	11, 640
Cac8I	GCNNGC	6 cut(s)	254, 408, 729, 1105, 1443, 1490
CaiI	CAGNNNCTG	1 cut(s)	763
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	2 cut(s)	169, 296
Cfr13I	GGNCC	1 cut(s)	854
Cfr9I	CCCGGG	1 cut(s)	276
Csp6I	GTAC	2 cut(s)	1324, 1387
CviQI	GTAC	2 cut(s)	1324, 1387
DpnI	GATC	6 cut(s)	161, 498, 593, 743, 1077, 1449
DpnII	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	306
Eco130I	CCWWGG	2 cut(s)	971, 1494
Eco24I	GRGCYC	1 cut(s)	1206
Eco31I	GGTCTC	1 cut(s)	382
Eco32I	GATATC	2 cut(s)	265, 368
Eco47I	GGWCC	1 cut(s)	854
Eco81I	CCTNAGG	1 cut(s)	1038
Eco88I	CYCGRG	1 cut(s)	276
EcoRII	CCWGG	4 cut(s)	722, 1078, 1422, 1483
EcoRV	GATATC	2 cut(s)	265, 368
EcoT14I	CCWWGG	2 cut(s)	971, 1494
EcoT38I	GRGCYC	1 cut(s)	1206
ErhI	CCWWGG	2 cut(s)	971, 1494
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FauNDI	CATATG	1 cut(s)	1161
FbaI	TGATCA	1 cut(s)	159
FblI	GTMKAC	1 cut(s)	1353
Fnu4HI	GCNGC	4 cut(s)	170, 207, 1101, 1233
FokI	GGATG	3 cut(s)	1070, 1424, 1445
FriOI	GRGCYC	1 cut(s)	1206
Fsp4HI	GCNGC	4 cut(s)	170, 207, 1101, 1233
FspBI	CTAG	1 cut(s)	636
FspI	TGCGCA	1 cut(s)	168
GlaI	GCGC	2 cut(s)	168, 295
GluI	GCNGC	4 cut(s)	170, 207, 1101, 1233
GsaI	CCCAGC	2 cut(s)	1020, 1411
HaeIII	GGCC	1 cut(s)	1314
HapII	CCGG	1 cut(s)	277
HhaI	GCGC	2 cut(s)	169, 296
Hin6I	GCGC	2 cut(s)	167, 294
HinP1I	GCGC	2 cut(s)	167, 294
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	109, 1093, 1354
Hpy188III	TCNNGA	8 cut(s)	268, 283, 467, 595, 745, 758, 1037, 1336
Hpy8I	GTNNAC	3 cut(s)	109, 1093, 1354
HpyAV	CCTTC	3 cut(s)	1216, 1304, 1314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 258, 728, 1061
HspAI	GCGC	2 cut(s)	167, 294
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
LmnI	GCTCC	2 cut(s)	73, 319
Lsp1109I	GCAGC	2 cut(s)	181, 193
LweI	GCATC	3 cut(s)	709, 1092, 1467
MaeI	CTAG	1 cut(s)	636
MaeIII	GTNAC	4 cut(s)	419, 451, 1251, 1262
MalI	GATC	6 cut(s)	161, 498, 593, 743, 1077, 1449
MboI	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
MboII	GAAGA	7 cut(s)	41, 665, 835, 838, 860, 953, 1514
MflI	RGATCY	1 cut(s)	741
MhlI	GDGCHC	3 cut(s)	78, 254, 1206
MlyI	GAGTC	2 cut(s)	41, 180
MmeI	TCCRAC	1 cut(s)	453
MseI	TTAA	2 cut(s)	1031, 1167
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	6 cut(s)	277, 278, 724, 1080, 1424, 1485
Mva1269I	GAATGC	1 cut(s)	1365
MvaI	CCWGG	4 cut(s)	724, 1080, 1424, 1485
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	206, 258, 728, 1061
NciI	CCSGG	2 cut(s)	277, 278
NcoI	CCATGG	1 cut(s)	971
NdeI	CATATG	1 cut(s)	1161
NdeII	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
NlaIV	GGNNCC	2 cut(s)	743, 855
NmuCI	GTSAC	4 cut(s)	419, 451, 1251, 1262
NsbI	TGCGCA	1 cut(s)	168
NspI	RCATGY	3 cut(s)	652, 895, 1445
NspV	TTCGAA	1 cut(s)	1220
PaeI	GCATGC	1 cut(s)	1445
PagI	TCATGA	1 cut(s)	267
PaqCI	CACCTGC	1 cut(s)	640
PciI	ACATGT	2 cut(s)	648, 891
PcsI	WCGNNNNNNNCGW	1 cut(s)	1104
PctI	GAATGC	1 cut(s)	1365
PkrI	GCNGC	4 cut(s)	171, 208, 1102, 1234
PleI	GAGTC	2 cut(s)	40, 180
PpsI	GAGTC	2 cut(s)	40, 180
PscI	ACATGT	2 cut(s)	648, 891
Psp6I	CCWGG	4 cut(s)	722, 1078, 1422, 1483
PspFI	CCCAGC	2 cut(s)	1016, 1407
PspGI	CCWGG	4 cut(s)	722, 1078, 1422, 1483
PspN4I	GGNNCC	2 cut(s)	743, 855
PspPI	GGNCC	1 cut(s)	854
PstNI	CAGNNNCTG	1 cut(s)	763
PsuI	RGATCY	1 cut(s)	741
RsaI	GTAC	2 cut(s)	1325, 1388
RsaNI	GTAC	2 cut(s)	1324, 1387
SaqAI	TTAA	2 cut(s)	1031, 1167
SatI	GCNGC	4 cut(s)	170, 207, 1101, 1233
Sau3AI	GATC	6 cut(s)	159, 496, 591, 741, 1075, 1447
Sau96I	GGNCC	1 cut(s)	854
SchI	GAGTC	2 cut(s)	41, 180
ScrFI	CCNGG	6 cut(s)	277, 278, 724, 1080, 1424, 1485
SduI	GDGCHC	3 cut(s)	78, 254, 1206
SfaNI	GCATC	3 cut(s)	709, 1092, 1467
SfuI	TTCGAA	1 cut(s)	1220
SinI	GGWCC	1 cut(s)	854
SmaI	CCCGGG	1 cut(s)	278
SmlI	CTYRAG	2 cut(s)	188, 1199
SmoI	CTYRAG	2 cut(s)	188, 1199
SphI	GCATGC	1 cut(s)	1445
SsiI	CCGC	6 cut(s)	292, 317, 766, 1101, 1210, 1232
SspMI	CTAG	1 cut(s)	636
StyD4I	CCNGG	6 cut(s)	275, 276, 722, 1078, 1422, 1483
StyI	CCWWGG	2 cut(s)	971, 1494
TaqI	TCGA	1 cut(s)	1220
TatI	WGTACW	1 cut(s)	1386
TauI	GCSGC	2 cut(s)	1103, 1235
Tru1I	TTAA	2 cut(s)	1031, 1167
Tru9I	TTAA	2 cut(s)	1031, 1167
TscAI	CASTG	4 cut(s)	246, 919, 1260, 1434
TseFI	GTSAC	4 cut(s)	419, 451, 1251, 1262
TseI	GCWGC	2 cut(s)	169, 206
Tsp45I	GTSAC	4 cut(s)	419, 451, 1251, 1262
TspDTI	ATGAA	6 cut(s)	284, 461, 526, 860, 897, 1428
TspGWI	ACGGA	2 cut(s)	1410, 1554
TspMI	CCCGGG	1 cut(s)	276
TspRI	CASTG	4 cut(s)	246, 919, 1260, 1434
VpaK11BI	GGWCC	1 cut(s)	854
XapI	RAATTY	2 cut(s)	1415, 1507
XceI	RCATGY	3 cut(s)	652, 895, 1445
XcmI	CCANNNNNNNNNTGG	2 cut(s)	636, 814
XmaI	CCCGGG	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	1353
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.