Rh7BG061000

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004856
Physical Location & Seq
Forward (+)
4078180 .. 4082976
4797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG061000.1

Sequence Viewer

Length: 975 bp
ATGGTTTATACCATGCCACCAGTTAGTTGGTCTGACATATCTTATTATCATAATCAGATTCTTCCTCTGATACAAAAATACAAAGTTGTACATTTGAATAAAACTGATGCTAGACTGGCCAATAATGGACAACCCTTGGAGATCCAGAAACTTCGATGCCGAGTAAATTTTAGTGCTCTGCGATTCACTTCTCAAATAGAGGAATTGGGTAGAAGGGTCATAAATCTTCTTAGGGCAAATGGTCCTTTCCTAGTTCTTCATCTTAGATATGAAATGGACATGTTGGCATTTTCTGGCTGTACCCAAGGTTGCAACGCTGAGGAGGTGGAAGAGCTGACAAGGATGAGATATGCTTATCCCTGGTGGAAGGAGAAAATAATAAACTCTGACCTGAAAAGGAAAGATGGTTTGTGTCCTTTGACACCAGAAGAAACTGCTCTCACACTGAGTGCACTTGAAATTGATCCCAACATCCAGATCTATATTGCCGCTGGTGAAATCTACGGTGGTGAGAGGAGAATGGCAAGTCTTGCAAAGGCTTTTCCAAAATTGGTCAGAAAGGAGACACTGTTAGAACCGTCAGACCTCAGGTTCTTTCAAAACCACTCCTCCCAAATGGCGGCATTGGATTATCTCGTCTCGTTGGAGAGTGATATCTTTGTTCCCACATATGATGGAAACATGGCTAAAGTTGTTGAAGGCCATCGCAGATTTCTCGGGTTCAAGAAGACAATTCTGCTGGACAGAAGGCTTCTTGTTGATTTGATAGACCAGTACAATGGTGGAGAATTGAATTGGGATGAATTCTCTTCTGCAGTGAAGGAAGCTCATGCAGAACGCATGGGTAACCCAACTAAAAGGTTGATGATCCAAGACAGACCTAAAGAGGAGGACTATTTCTATGCCAACCCAGAAGAGTGTTTGCAATTGTCAGATGATGAGCAATTATCAGATGGGCTATTGAGTAGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

324

Amino Acids

37.35

Weight (kDa)

5.54

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 8 - 238 1e-68 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 489, 620
AclWI GGATC 3 cut(s) 136, 458, 862
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 2 cut(s) 166, 803
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 3 cut(s) 90, 301, 776
AfiI CCNNNNNNNGG 1 cut(s) 619
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 6 cut(s) 97, 458, 599, 698, 724, 793
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 2 cut(s) 334, 827
AluI AGCT 2 cut(s) 334, 827
Alw21I GWGCWC 2 cut(s) 178, 454
Alw26I GTCTC 2 cut(s) 557, 643
Alw44I GTGCAC 1 cut(s) 450
AlwI GGATC 3 cut(s) 136, 458, 862
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 2 cut(s) 117, 700
ApaLI GTGCAC 1 cut(s) 450
ApoI RAATTY 2 cut(s) 166, 803
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 506, 521
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 454
BalI TGGCCA 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 734
Bbv12I GWGCWC 2 cut(s) 178, 454
BbvCI CCTCAGC 1 cut(s) 318
BccI CCATC 4 cut(s) 398, 668, 711, 947
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 557, 643
BfaI CTAG 2 cut(s) 111, 251
BfmI CTRYAG 1 cut(s) 813
BglII AGATCT 1 cut(s) 477
BisI GCNGC 2 cut(s) 489, 621
BlsI GCNGC 2 cut(s) 490, 622
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 242
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 97, 146
BpiI GAAGAC 1 cut(s) 734
Bpu10I CCTNAGC 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 135, 304, 359
BsaXI ACNNNNNCTCC 4 cut(s) 554, 584, 593, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse1I ACTGG 3 cut(s) 20, 120, 772
Bse21I CCTNAGG 1 cut(s) 587
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 3 cut(s) 135, 304, 359
BseGI GGATG 3 cut(s) 348, 471, 805
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMII CTCAG 3 cut(s) 309, 437, 601
BseNI ACTGG 3 cut(s) 20, 120, 772
BseRI GAGGAG 4 cut(s) 335, 529, 598, 902
BseSI GKGCMC 1 cut(s) 454
BshFI GGCC 2 cut(s) 119, 702
BsiHKAI GWGCWC 2 cut(s) 178, 454
BsiHKCI CYCGRG 1 cut(s) 716
BslI CCNNNNNNNGG 1 cut(s) 619
BsmAI GTCTC 2 cut(s) 557, 643
BsmBI CGTCTC 1 cut(s) 643
BsnI GGCC 2 cut(s) 119, 702
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 2 cut(s) 178, 454
Bsp1407I TGTACA 1 cut(s) 88
Bsp143I GATC 4 cut(s) 141, 463, 477, 867
BspACI CCGC 2 cut(s) 489, 620
BspANI GGCC 2 cut(s) 119, 702
BspCNI CTCAG 3 cut(s) 310, 438, 600
BspMAI CTGCAG 1 cut(s) 817
BspPI GGATC 3 cut(s) 136, 458, 862
BspQI GCTCTTC 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 88
BsrI ACTGG 3 cut(s) 20, 120, 772
BssECI CCNNGG 3 cut(s) 135, 304, 359
BssMI GATC 4 cut(s) 141, 463, 477, 867
BssT1I CCWWGG 2 cut(s) 135, 304
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 3 cut(s) 506, 570, 579
Bst6I CTCTTC 3 cut(s) 324, 814, 909
BstAPI GCANNNNNTGC 1 cut(s) 530
BstAUI TGTACA 1 cut(s) 88
BstDEI CTNAG 5 cut(s) 230, 263, 318, 446, 587
BstEII GGTNACC 1 cut(s) 845
BstF5I GGATG 3 cut(s) 348, 471, 805
BstKTI GATC 4 cut(s) 144, 466, 480, 870
BstMAI GTCTC 2 cut(s) 557, 643
BstMBI GATC 4 cut(s) 141, 463, 477, 867
BstMWI GCNNNNNNNGC 2 cut(s) 116, 530
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 283
BstPI GGTNACC 1 cut(s) 845
BstSCI CCNGG 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 813
BstSLI GKGCMC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 734
BstX2I RGATCY 2 cut(s) 141, 477
BstXI CCANNNNNNTGG 2 cut(s) 27, 779
BstYI RGATCY 2 cut(s) 141, 477
Bsu36I CCTNAGG 1 cut(s) 587
BsuRI GGCC 2 cut(s) 119, 702
BtgZI GCGATG 1 cut(s) 689
BtsCI GGATG 3 cut(s) 348, 471, 805
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 3 cut(s) 443, 566, 822
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 89, 300, 775
CviAII CATG 5 cut(s) 13, 280, 682, 830, 841
CviJI RGCY 9 cut(s) 119, 297, 334, 539, 686, 702, 751, 827, 958
CviKI_1 RGCY 9 cut(s) 119, 297, 334, 539, 686, 702, 751, 827, 958
CviQI GTAC 3 cut(s) 89, 300, 775
DdeI CTNAG 5 cut(s) 230, 263, 318, 446, 587
DpnI GATC 4 cut(s) 143, 465, 479, 869
DpnII GATC 4 cut(s) 141, 463, 477, 867
DraIII CACNNNGTG 1 cut(s) 449
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 3 cut(s) 324, 814, 909
EarI CTCTTC 3 cut(s) 324, 814, 909
Eco130I CCWWGG 2 cut(s) 135, 304
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 242
Eco81I CCTNAGG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 716
Eco91I GGTNACC 1 cut(s) 845
EcoO65I GGTNACC 1 cut(s) 845
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 359
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 2 cut(s) 135, 304
ErhI CCWWGG 2 cut(s) 135, 304
Esp3I CGTCTC 1 cut(s) 643
FaeI CATG 5 cut(s) 16, 283, 685, 833, 844
FatI CATG 5 cut(s) 12, 279, 681, 829, 840
FauNDI CATATG 1 cut(s) 670
Fnu4HI GCNGC 2 cut(s) 489, 621
FokI GGATG 3 cut(s) 355, 458, 812
Fsp4HI GCNGC 2 cut(s) 489, 621
FspBI CTAG 2 cut(s) 111, 251
GluI GCNGC 2 cut(s) 489, 621
HaeIII GGCC 2 cut(s) 119, 702
Hin1II CATG 5 cut(s) 16, 283, 685, 833, 844
HinfI GANTC 2 cut(s) 58, 183
HphI GGTGA 2 cut(s) 506, 521
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 8 cut(s) 34, 57, 69, 388, 557, 583, 934, 952
Hpy188III TCNNGA 3 cut(s) 145, 475, 724
Hpy8I GTNNAC 1 cut(s) 452
HpyAV CCTTC 5 cut(s) 207, 361, 692, 741, 814
HpyCH4III ACNGT 3 cut(s) 506, 570, 579
HpyCH4V TGCA 6 cut(s) 312, 452, 533, 815, 833, 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 530
HpyF3I CTNAG 5 cut(s) 230, 263, 318, 446, 587
Hsp92II CATG 5 cut(s) 16, 283, 685, 833, 844
Kzo9I GATC 4 cut(s) 141, 463, 477, 867
LguI GCTCTTC 1 cut(s) 324
LweI GCATC 2 cut(s) 97, 146
MaeI CTAG 2 cut(s) 111, 251
MaeIII GTNAC 1 cut(s) 845
MalI GATC 4 cut(s) 143, 465, 479, 869
MboI GATC 4 cut(s) 141, 463, 477, 867
MboII GAAGA 8 cut(s) 53, 218, 248, 341, 440, 739, 801, 926
MfeI CAATTG 1 cut(s) 926
MflI RGATCY 2 cut(s) 141, 477
MhlI GDGCHC 2 cut(s) 178, 454
MlsI TGGCCA 1 cut(s) 119
MluNI TGGCCA 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 9 cut(s) 75, 193, 313, 316, 507, 596, 619, 880, 883
Mox20I TGGCCA 1 cut(s) 119
MscI TGGCCA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 119
MspA1I CMGCKG 1 cut(s) 491
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 926
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 116, 530
NdeI CATATG 1 cut(s) 670
NdeII GATC 4 cut(s) 141, 463, 477, 867
NlaIII CATG 5 cut(s) 16, 283, 685, 833, 844
NmeAIII GCCGAG 1 cut(s) 185
NspI RCATGY 1 cut(s) 283
PciI ACATGT 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 58, 183
PkrI GCNGC 2 cut(s) 490, 622
PscI ACATGT 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 359
PspEI GGTNACC 1 cut(s) 845
PspGI CCWGG 1 cut(s) 359
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 817
PsuI RGATCY 2 cut(s) 141, 477
RsaI GTAC 3 cut(s) 90, 301, 776
RsaNI GTAC 3 cut(s) 89, 300, 775
SapI GCTCTTC 1 cut(s) 324
SatI GCNGC 2 cut(s) 489, 621
Sau3AI GATC 4 cut(s) 141, 463, 477, 867
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 2 cut(s) 178, 454
SetI ASST 9 cut(s) 310, 327, 336, 393, 588, 593, 829, 863, 883
SfaNI GCATC 2 cut(s) 97, 146
SfcI CTRYAG 1 cut(s) 813
SinI GGWCC 1 cut(s) 242
SsiI CCGC 2 cut(s) 489, 620
SspMI CTAG 2 cut(s) 111, 251
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 2 cut(s) 135, 304
TaaI ACNGT 3 cut(s) 506, 570, 579
TaqI TCGA 1 cut(s) 154
TatI WGTACW 2 cut(s) 88, 774
TauI GCSGC 2 cut(s) 491, 623
TfiI GAWTC 2 cut(s) 58, 183
TscAI CASTG 3 cut(s) 450, 573, 822
TspDTI ATGAA 3 cut(s) 248, 285, 816
TspRI CASTG 3 cut(s) 450, 573, 822
VneI GTGCAC 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 2 cut(s) 166, 803
XceI RCATGY 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 2 cut(s) 24, 779
XspI CTAG 2 cut(s) 111, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.