Rw4G031060

At1g04910-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
57935806 .. 57938438
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031060.1

Sequence Viewer

Length: 1281 bp
ATGGACTACTATTTGAAGGATATAATGGGAGGGATCAAAGTATTCAAGGGAGAGAAGTTAACGAGCTTGATGGTTTCGCAGTCACGATTCTGCAGACTCAAACTGTTAGCGGCTGCAGCCACAACCATGTTGCTACTCTGCGCCTGCGCTGTGCAGTACACCACGCTCAGCGATACAATGAAGCCACGCGTGCTGATATTTCGTTCTTCTCAACATTTTGCTCCTCCACAGAGTAGTACTGCTGATATTGAAGGGGATTACGTGAACAATGGATTTCTCATGGTCTCATCCAATGGAGGATTGAATCAAATGCGAGCGGGCGTTTTTGAATGTCACCTTATAGTTCCCGAGTTGGATAAAACCTCCTTTTGGAATGATCGGAGTCAGTTTGAAGATATATTCGACGTGGATCACTTCATAGCATCATTGAGCGATGAAGTCCGCATATTGAAAGTTCTGCCCCAGAAGCAGAGAAGAAGAATAGAAATGGCTTCCCTCTATTCCATGCCCCCTGCTAGTTGGTCTAATATGACATTTTACTACAACAGGGTTCTTCCTCAGATAAAGAAGTATGAAGTACTGCATTTCACTAAAACTGATACAAGACTTGCCAATAATGGGATCCCTGTGAAGTTCACTCCCCCAATTGAGGAATTGGGGAAGAAGATTGTAAGGATTCTGAGAGAAAGGGGCCCGTTCTTAGTTCTTCATCTCAGATATGAAATGGACATGTTAGCCTTTTCGGGTTGTACTGAAGGCTGCGATGACAAAGAAATCGAAGAATTGACAAATATGAGAAAATCTGGGAAATGCCCATTAACTCCCGAGGAGACTGCTCTTGCACTGAGGGCATTGGATATCGATCCTAGTATCCAAGTTAAGAAAGAAACATTGCTGGAAGCCTCAGACCTTGAGCCCTTCCGAAACCATTCGAACCAAATGGCTGCATTGGATTACATTGTGTCACTGGAAAGTGATATCTTCGCTCCAACTTATGGAGGAAACATGGCAAGAGTTGTCGAAGGCCATAGACGGTACTTGGGTTTCAGGACAACAATTCGTCTGGACAGAATGCTTCTAGTGAATTTGATAGACCAGTACAAGAAGGGTAGACTGAGCTGGGATGAATTTACCCAGGCAGTGAAAACAGGACATGCCGATCGCATGGGTAGCCCTACACAAAGATTGGAGATTCCTGGTAAACCCAAGGAAGAGGAATACTTCTATAACAATCCACAGGAATGTTTACCACCAATTTCTACAAAACCAAAGAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

48.72

Weight (kDa)

8.29

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 92 - 209 1.1e-22 GDP-fucose protein O-fucosyltransferase
O-FucT PF10250 210 - 289 2.7e-19 GDP-fucose protein O-fucosyltransferase
O-FucT PF10250 293 - 347 2.9e-13 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 995
AccBSI CCGCTC 1 cut(s) 317
AccI GTMKAC 1 cut(s) 1111
AccII CGCG 1 cut(s) 189
AciI CCGC 3 cut(s) 110, 317, 442
AclWI GGATC 5 cut(s) 41, 417, 616, 629, 857
AcsI RAATTY 2 cut(s) 1084, 1127
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 6 cut(s) 158, 238, 579, 751, 1037, 1100
AfiI CCNNNNNNNGG 4 cut(s) 369, 618, 649, 995
AflIII ACRYGT 2 cut(s) 187, 729
AgsI TTSAA 7 cut(s) 16, 46, 251, 304, 329, 392, 451
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 2 cut(s) 1134, 1195
AluBI AGCT 2 cut(s) 66, 1119
AluI AGCT 2 cut(s) 66, 1119
Alw26I GTCTC 2 cut(s) 289, 824
AlwI GGATC 5 cut(s) 41, 417, 616, 629, 857
Ama87I CYCGRG 2 cut(s) 347, 824
AoxI GGCC 2 cut(s) 691, 1024
ApaI GGGCCC 1 cut(s) 695
ApeKI GCWGC 4 cut(s) 113, 116, 759, 944
ApoI RAATTY 2 cut(s) 1084, 1127
Asp700I GAANNNNTTC 1 cut(s) 928
AspLEI GCGC 2 cut(s) 143, 149
AspS9I GGNCC 2 cut(s) 691, 692
AsuHPI GGTGA 1 cut(s) 326
AsuII TTCGAA 1 cut(s) 932
AvaI CYCGRG 2 cut(s) 347, 824
BaeGI GKGCMC 1 cut(s) 695
BaeI ACNNNNGTAYC 2 cut(s) 1027, 1060
BamHI GGATCC 1 cut(s) 621
BanII GRGCYC 2 cut(s) 695, 918
BbvI GCAGC 4 cut(s) 100, 128, 746, 931
BccI CCATC 1 cut(s) 64
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 2 cut(s) 1136, 1197
BciVI GTATCC 1 cut(s) 881
BcoDI GTCTC 2 cut(s) 289, 824
BfaI CTAG 3 cut(s) 516, 867, 1079
BfmI CTRYAG 2 cut(s) 91, 114
BfuI GTATCC 1 cut(s) 881
BisI GCNGC 5 cut(s) 111, 114, 117, 760, 945
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 5 cut(s) 112, 115, 118, 761, 946
BmcAI AGTACT 2 cut(s) 238, 579
Bme1390I CCNGG 2 cut(s) 1136, 1197
BmeT110I CYCGRG 2 cut(s) 347, 824
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 2 cut(s) 691, 692
BmiI GGNNCC 3 cut(s) 623, 692, 693
BmrFI CCNGG 2 cut(s) 1136, 1197
BmsI GCATC 1 cut(s) 431
Bpu1102I GCTNAGC 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 932
BpuEI CTTGAG 1 cut(s) 932
Bsa29I ATCGAT 1 cut(s) 861
BsaAI YACGTR 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 861
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 3 cut(s) 825, 1134, 1206
Bsc4I CCNNNNNNNGG 4 cut(s) 369, 618, 649, 995
Bse1I ACTGG 2 cut(s) 972, 1096
Bse3DI GCAATG 1 cut(s) 890
Bse8I GATNNNNATC 1 cut(s) 861
BseBI CCWGG 2 cut(s) 1136, 1197
BseCI ATCGAT 1 cut(s) 861
BseDI CCNNGG 3 cut(s) 825, 1134, 1206
BseGI GGATG 2 cut(s) 287, 1129
BseJI GATNNNNATC 1 cut(s) 861
BseLI CCNNNNNNNGG 4 cut(s) 369, 618, 649, 995
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 7 cut(s) 181, 572, 671, 727, 836, 918, 1106
BseNI ACTGG 2 cut(s) 972, 1096
BseRI GAGGAG 2 cut(s) 213, 842
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 4 cut(s) 100, 128, 746, 931
BseYI CCCAGC 1 cut(s) 1119
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 1162
BshFI GGCC 2 cut(s) 693, 1026
BshVI ATCGAT 1 cut(s) 861
BsiEI CGRYCG 1 cut(s) 1162
BsiHKCI CYCGRG 2 cut(s) 347, 824
BslI CCNNNNNNNGG 4 cut(s) 369, 618, 649, 995
BsmAI GTCTC 2 cut(s) 289, 824
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 2 cut(s) 693, 1026
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 2 cut(s) 347, 824
Bsp119I TTCGAA 1 cut(s) 932
Bsp120I GGGCCC 1 cut(s) 691
Bsp1286I GDGCHC 2 cut(s) 695, 918
Bsp143I GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 3 cut(s) 110, 317, 442
BspANI GGCC 2 cut(s) 693, 1026
BspCNI CTCAG 7 cut(s) 180, 571, 672, 726, 837, 917, 1107
BspDI ATCGAT 1 cut(s) 861
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 623, 692, 693
BspMAI CTGCAG 2 cut(s) 95, 118
BspPI GGATC 5 cut(s) 41, 417, 616, 629, 857
BspT104I TTCGAA 1 cut(s) 932
BspTNI GGTCTC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 890
BsrI ACTGG 2 cut(s) 972, 1096
BssECI CCNNGG 3 cut(s) 825, 1134, 1206
BssMI GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
BssT1I CCWWGG 1 cut(s) 1206
Bst2UI CCWGG 2 cut(s) 1136, 1197
Bst4CI ACNGT 2 cut(s) 105, 1035
Bst6I CTCTTC 1 cut(s) 1206
BstBAI YACGTR 1 cut(s) 262
BstBI TTCGAA 1 cut(s) 932
BstC8I GCNNGC 4 cut(s) 145, 191, 315, 319
BstDEI CTNAG 8 cut(s) 167, 558, 680, 700, 713, 845, 904, 1115
BstF5I GGATG 2 cut(s) 287, 1129
BstFNI CGCG 1 cut(s) 189
BstHHI GCGC 2 cut(s) 143, 149
BstKTI GATC 6 cut(s) 36, 379, 412, 624, 865, 1162
BstMAI GTCTC 2 cut(s) 289, 824
BstMBI GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
BstMCI CGRYCG 1 cut(s) 1162
BstMWI GCNNNNNNNGC 5 cut(s) 116, 190, 466, 848, 1170
BstNI CCWGG 2 cut(s) 1136, 1197
BstNSI RCATGY 2 cut(s) 733, 1157
BstSCI CCNGG 2 cut(s) 1134, 1195
BstSFI CTRYAG 2 cut(s) 91, 114
BstSLI GKGCMC 1 cut(s) 695
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 4 cut(s) 100, 128, 746, 931
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
Bsu15I ATCGAT 1 cut(s) 861
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 2 cut(s) 693, 1026
BsuTUI ATCGAT 1 cut(s) 861
BtgZI GCGATG 2 cut(s) 447, 777
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 2 cut(s) 287, 1129
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 3 cut(s) 842, 965, 1146
Cac8I GCNNGC 4 cut(s) 145, 191, 315, 319
CfoI GCGC 2 cut(s) 143, 149
Cfr13I GGNCC 2 cut(s) 691, 692
ClaI ATCGAT 1 cut(s) 861
Csp6I GTAC 6 cut(s) 157, 237, 578, 750, 1036, 1099
CviAII CATG 7 cut(s) 127, 280, 505, 730, 1006, 1154, 1165
CviQI GTAC 6 cut(s) 157, 237, 578, 750, 1036, 1099
DdeI CTNAG 8 cut(s) 167, 558, 680, 700, 713, 845, 904, 1115
DpnI GATC 6 cut(s) 35, 378, 411, 623, 864, 1161
DpnII GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
Eam1104I CTCTTC 1 cut(s) 1206
EarI CTCTTC 1 cut(s) 1206
Eco130I CCWWGG 1 cut(s) 1206
Eco24I GRGCYC 2 cut(s) 695, 918
Eco31I GGTCTC 1 cut(s) 289
Eco32I GATATC 2 cut(s) 859, 979
Eco57I CTGAAG 1 cut(s) 774
Eco88I CYCGRG 2 cut(s) 347, 824
EcoO109I RGGNCCY 1 cut(s) 691
EcoRII CCWGG 2 cut(s) 1134, 1195
EcoRV GATATC 2 cut(s) 859, 979
EcoT14I CCWWGG 1 cut(s) 1206
EcoT38I GRGCYC 2 cut(s) 695, 918
ErhI CCWWGG 1 cut(s) 1206
FaeI CATG 7 cut(s) 130, 283, 508, 733, 1009, 1157, 1168
FatI CATG 7 cut(s) 126, 279, 504, 729, 1005, 1153, 1164
FauI CCCGC 1 cut(s) 310
FblI GTMKAC 1 cut(s) 1111
Fnu4HI GCNGC 5 cut(s) 111, 114, 117, 760, 945
FokI GGATG 2 cut(s) 274, 1136
FriOI GRGCYC 2 cut(s) 695, 918
Fsp4HI GCNGC 5 cut(s) 111, 114, 117, 760, 945
FspBI CTAG 3 cut(s) 516, 867, 1079
GlaI GCGC 2 cut(s) 142, 148
GluI GCNGC 5 cut(s) 111, 114, 117, 760, 945
GsaI CCCAGC 1 cut(s) 1123
HaeIII GGCC 2 cut(s) 693, 1026
HhaI GCGC 2 cut(s) 143, 149
Hin1II CATG 7 cut(s) 130, 283, 508, 733, 1009, 1157, 1168
Hin6I GCGC 2 cut(s) 141, 147
HinP1I GCGC 2 cut(s) 141, 147
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 6 cut(s) 87, 96, 304, 382, 676, 1192
HpaI GTTAAC 1 cut(s) 60
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 7 cut(s) 60, 159, 265, 636, 1112, 1202, 1247
Hpy188I TCNGA 6 cut(s) 381, 561, 681, 716, 907, 923
Hpy188III TCNNGA 5 cut(s) 84, 347, 824, 1048, 1064
Hpy8I GTNNAC 7 cut(s) 60, 159, 265, 636, 1112, 1202, 1247
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 6 cut(s) 10, 245, 749, 928, 1016, 1099
HpyCH4III ACNGT 2 cut(s) 105, 1035
HpyCH4IV ACGT 2 cut(s) 261, 405
HpyCH4V TGCA 6 cut(s) 93, 116, 154, 583, 842, 947
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 190, 466, 848, 1170
HpyF3I CTNAG 8 cut(s) 167, 558, 680, 700, 713, 845, 904, 1115
HpySE526I ACGT 2 cut(s) 261, 405
Hsp92II CATG 7 cut(s) 130, 283, 508, 733, 1009, 1157, 1168
HspAI GCGC 2 cut(s) 141, 147
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
LmnI GCTCC 2 cut(s) 226, 991
Lsp1109I GCAGC 4 cut(s) 100, 128, 746, 931
LweI GCATC 1 cut(s) 431
MaeI CTAG 3 cut(s) 516, 867, 1079
MaeII ACGT 2 cut(s) 261, 405
MaeIII GTNAC 3 cut(s) 81, 332, 963
MalI GATC 6 cut(s) 35, 378, 411, 623, 864, 1161
MbiI CCGCTC 1 cut(s) 317
MboI GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 695, 918
MluCI AATT 7 cut(s) 645, 653, 782, 1056, 1084, 1127, 1254
MluI ACGCGT 1 cut(s) 187
MlyI GAGTC 2 cut(s) 90, 391
MmeI TCCRAC 2 cut(s) 333, 1013
MroXI GAANNNNTTC 1 cut(s) 928
MseI TTAA 3 cut(s) 59, 818, 879
MslI CAYNNNNRTG 2 cut(s) 125, 1240
MspR9I CCNGG 2 cut(s) 1136, 1197
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 1 cut(s) 1077
MvaI CCWGG 2 cut(s) 1136, 1197
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 5 cut(s) 116, 190, 466, 848, 1170
NdeII GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
NlaIII CATG 7 cut(s) 130, 283, 508, 733, 1009, 1157, 1168
NlaIV GGNNCC 3 cut(s) 623, 692, 693
NmuCI GTSAC 3 cut(s) 81, 332, 963
NspI RCATGY 2 cut(s) 733, 1157
NspV TTCGAA 1 cut(s) 932
PciI ACATGT 1 cut(s) 729
PctI GAATGC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 928
PfeI GAWTC 4 cut(s) 87, 304, 676, 1192
PflMI CCANNNNNTGG 1 cut(s) 995
PkrI GCNGC 5 cut(s) 112, 115, 118, 761, 946
Ple19I CGATCG 1 cut(s) 1162
PleI GAGTC 2 cut(s) 90, 390
PpsI GAGTC 2 cut(s) 90, 390
Ppu21I YACGTR 1 cut(s) 262
PscI ACATGT 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 1134, 1195
PspFI CCCAGC 1 cut(s) 1119
PspGI CCWGG 2 cut(s) 1134, 1195
PspN4I GGNNCC 3 cut(s) 623, 692, 693
PspOMI GGGCCC 1 cut(s) 691
PspPI GGNCC 2 cut(s) 691, 692
PstI CTGCAG 2 cut(s) 95, 118
PsuI RGATCY 1 cut(s) 621
PvuI CGATCG 1 cut(s) 1162
RsaI GTAC 6 cut(s) 158, 238, 579, 751, 1037, 1100
RsaNI GTAC 6 cut(s) 157, 237, 578, 750, 1036, 1099
RseI CAYNNNNRTG 2 cut(s) 125, 1240
SaqAI TTAA 3 cut(s) 59, 818, 879
SatI GCNGC 5 cut(s) 111, 114, 117, 760, 945
Sau3AI GATC 6 cut(s) 33, 376, 409, 621, 862, 1159
Sau96I GGNCC 2 cut(s) 691, 692
ScaI AGTACT 2 cut(s) 238, 579
SchI GAGTC 2 cut(s) 90, 391
ScrFI CCNGG 2 cut(s) 1136, 1197
SduI GDGCHC 2 cut(s) 695, 918
SetI ASST 7 cut(s) 68, 264, 339, 365, 408, 912, 1121
SfaNI GCATC 1 cut(s) 431
SfcI CTRYAG 2 cut(s) 91, 114
SfuI TTCGAA 1 cut(s) 932
SmiMI CAYNNNNRTG 2 cut(s) 125, 1240
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 7 cut(s) 645, 653, 782, 1056, 1084, 1127, 1254
SsiI CCGC 3 cut(s) 110, 317, 442
SspMI CTAG 3 cut(s) 516, 867, 1079
StyD4I CCNGG 2 cut(s) 1134, 1195
StyI CCWWGG 1 cut(s) 1206
TaaI ACNGT 2 cut(s) 105, 1035
TaiI ACGT 2 cut(s) 264, 408
TaqI TCGA 5 cut(s) 402, 777, 861, 932, 1020
TasI AATT 7 cut(s) 645, 653, 782, 1056, 1084, 1127, 1254
TatI WGTACW 5 cut(s) 156, 236, 577, 749, 1098
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 4 cut(s) 87, 304, 676, 1192
Tru1I TTAA 3 cut(s) 59, 818, 879
Tru9I TTAA 3 cut(s) 59, 818, 879
TscAI CASTG 3 cut(s) 849, 972, 1146
TseFI GTSAC 3 cut(s) 81, 332, 963
TseI GCWGC 4 cut(s) 113, 116, 759, 944
Tsp45I GTSAC 3 cut(s) 81, 332, 963
TspDTI ATGAA 7 cut(s) 194, 406, 450, 588, 698, 735, 1140
TspRI CASTG 3 cut(s) 849, 972, 1146
Van91I CCANNNNNTGG 1 cut(s) 995
XapI RAATTY 2 cut(s) 1084, 1127
XceI RCATGY 2 cut(s) 733, 1157
XmiI GTMKAC 1 cut(s) 1111
XmnI GAANNNNTTC 1 cut(s) 928
XspI CTAG 3 cut(s) 516, 867, 1079
ZrmI AGTACT 2 cut(s) 238, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.