FvH4_5g13360

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002611
Physical Location & Seq
Reverse (-)
7537963 .. 7542004
4042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13360.t1

Sequence Viewer

Length: 1551 bp
ATGTGCAAGGTGGAGAAGGAGAGAAGAGGAGTGATGGGGATAAAGGGGCTGGGAGGAGGAGAGAAGCTGAAGAACTCGCTGCTGCAAACGACGTCGCCTTCTCGGTCGAGAATGAAGCTGTGGATGATAAGGGCGACGACGTCGGTGTTGCTGTGGACGTGTGTTGTGCAATTGACGGCGTTGGGGGATATGTGGGGGCCTAGGGTTTTGAAAGGATGGCCGTCTTGCTTCTCTCAGGAGAGTGCCGTGGCTTCGTCGGTTTTGCAGGACCGGACGACTTCCGTTCCGGCCAGAGTTCTTCCACCAAAGAGGGTGTACAAAAACAATGGCTACTTGATGGTTTCGTGCAATGGTGGACTCAATCAAATGAGAGCAGCGATATGCGACATGGTTGCTATAGCAAGATATTTGAATGTCACTCTTGTAGTTCCCGAGCTCGATAAAACGTCCTTTTGGGCTGATCCCAGTGAGTTTCAAGACATATTTGATGTGGATCACTTCATCACATCCTTGAGAGATGAGGTTCGGATATTGAAAGAGTTGCCTCCCAGGGTTAAGAGAAGAGTGGAACTAGGAATGGTTTATACCATGCCACCAGTTAGTTGGTCTGACATGTCTTATTATCGTAATCAGATTCTTCCTCTGATACAGAAATATAAAATTGTACATCTAAATAGAACTGATGCTAGACTTGCCAATAATGGACAACCTTTGGAGATTCAGAGACTTCGATGCCGAGTAAATTTTAGTGCTCTGAGATTCACTTCTCAAATAGAGGAGTTGGGTAGAAGGGTCATAAACCTTTTAAGGGCAAATGGTCCTTTCTTAGTTCTTCATCTTAGATATGAAATGGACATGTTGGCATTTTCTGGCTGTACCCAAGGTTGCAATGCTGAGGAGGTGGAAGAGTTGACAAGGATGAGATATGCTTATCCCTGGTGGAAAGAGAAAATAATAAACTCTGACCTCAAAAGGAAAGATGGTTTGTGTCCTTTGACACCAGAAGAAACTGCTCTCACTCTGAGTGCTCTTGAAATTGATCCCAACATTCAGATCTATATTGCCGCTGGTGAAATCTACGGTGCTGAGAGGAGAATGGCAAGTCTTGCAAAGGCTTTTCCGAAATTGGTCAGAAAGGAGACTCTGTTAGAACCATCAGACCTCAGGTTCTTTCAAAACCACTCCTCCCAAATGGCAGCATTGGATTATCTTGTCTCGTTGGAGAGTGATATCTTTGTTCCCACATATGACGGAAACATGGCTAAAGTTGTTGAAGGCCATCGCAGATTTCTTGGGTTCAAGAAGACAATTTTGCTGGACAGAAGGCTTCTTGTTGATTTGATAGACCAGTACAATAGTGGAGAATTGAATTGGGATGAATTCTCATCTGCAGTGAAGGAAGCTCATGCAGAACGCATGGGTAACCCAACTAAAAGGTTGATGATCCAAGACCGGCCTAAAGAGGAGGACTATTTCTATGCCAACCCAGAAGAGTGTTTGCAGTTGTCAGATGATGAGCAATTATCAGATGGGGGATTGAGTAGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

517

Amino Acids

58.96

Weight (kDa)

8.4

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 111 - 430 1.8e-105 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 95, 143
AciI CCGC 1 cut(s) 1065
AclWI GGATC 4 cut(s) 455, 501, 1034, 1438
AcoI YGGCCR 2 cut(s) 218, 288
AcsI RAATTY 2 cut(s) 742, 1379
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 92, 140
AfaI GTAC 5 cut(s) 317, 666, 877, 1352, 1546
AfiI CCNNNNNNNGG 1 cut(s) 808
AflIII ACRYGT 3 cut(s) 158, 612, 855
AgsI TTSAA 9 cut(s) 211, 412, 476, 535, 1034, 1175, 1274, 1300, 1369
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 2 cut(s) 548, 935
AluBI AGCT 4 cut(s) 67, 118, 436, 1403
AluI AGCT 4 cut(s) 67, 118, 436, 1403
Alw21I GWGCWC 3 cut(s) 438, 754, 1030
Alw26I GTCTC 3 cut(s) 718, 1133, 1219
AlwI GGATC 4 cut(s) 455, 501, 1034, 1438
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 5 cut(s) 197, 218, 288, 1276, 1454
ApeKI GCWGC 4 cut(s) 79, 82, 374, 1196
ApoI RAATTY 2 cut(s) 742, 1379
AspA2I CCTAGG 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 197, 268, 818
AsuHPI GGTGA 1 cut(s) 1082
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 2 cut(s) 268, 818
AvrII CCTAGG 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 1163
BanII GRGCYC 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 1310
Bbv12I GWGCWC 3 cut(s) 438, 754, 1030
BbvCI CCTCAGC 1 cut(s) 894
BbvI GCAGC 4 cut(s) 66, 69, 386, 1208
BccI CCATC 7 cut(s) 28, 210, 331, 974, 1162, 1287, 1523
BceAI ACGGC 3 cut(s) 192, 205, 230
BcgI CGANNNNNNTGC 2 cut(s) 374, 408
BciT130I CCWGG 2 cut(s) 550, 937
BcoDI GTCTC 3 cut(s) 718, 1133, 1219
BfaI CTAG 3 cut(s) 201, 572, 687
BfmI CTRYAG 2 cut(s) 396, 1389
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 5 cut(s) 80, 83, 375, 1065, 1197
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 5 cut(s) 81, 84, 376, 1066, 1198
Bme1390I CCNGG 2 cut(s) 550, 937
Bme18I GGWCC 2 cut(s) 268, 818
BmeT110I CYCGRG 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 3 cut(s) 197, 268, 818
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 550, 937
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 2 cut(s) 673, 722
BmuI ACTGGG 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 1310
Bpu10I CCTNAGC 1 cut(s) 894
BpuEI CTTGAG 1 cut(s) 532
BsaAI YACGTR 1 cut(s) 1548
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 2 cut(s) 92, 140
BsaJI CCNNGG 6 cut(s) 200, 246, 548, 549, 880, 935
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 1130, 1160, 1169, 1199
Bsc4I CCNNNNNNNGG 1 cut(s) 808
Bse118I RCCGGY 1 cut(s) 1452
Bse1I ACTGG 3 cut(s) 465, 596, 1348
Bse21I CCTNAGG 1 cut(s) 1163
Bse3DI GCAATG 2 cut(s) 355, 895
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 2 cut(s) 550, 937
BseDI CCNNGG 6 cut(s) 200, 246, 548, 549, 880, 935
BseGI GGATG 5 cut(s) 129, 221, 506, 924, 1381
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 808
BseMI GCAATG 2 cut(s) 355, 895
BseMII CTCAG 6 cut(s) 248, 746, 885, 1013, 1077, 1177
BseNI ACTGG 3 cut(s) 465, 596, 1348
BseRI GAGGAG 8 cut(s) 42, 69, 72, 791, 911, 1105, 1174, 1478
BseXI GCAGC 4 cut(s) 66, 69, 386, 1208
BseYI CCCAGC 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 5 cut(s) 199, 220, 290, 1278, 1456
BsiEI CGRYCG 1 cut(s) 107
BsiHKAI GWGCWC 3 cut(s) 438, 754, 1030
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 3 cut(s) 271, 287, 1453
BslI CCNNNNNNNGG 1 cut(s) 808
BsmAI GTCTC 3 cut(s) 718, 1133, 1219
BsnI GGCC 5 cut(s) 199, 220, 290, 1278, 1456
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 3 cut(s) 438, 754, 1030
Bsp1407I TGTACA 2 cut(s) 315, 664
Bsp143I GATC 5 cut(s) 460, 493, 1039, 1053, 1443
BspACI CCGC 1 cut(s) 1065
BspANI GGCC 5 cut(s) 199, 220, 290, 1278, 1456
BspCNI CTCAG 6 cut(s) 247, 747, 886, 1014, 1078, 1176
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 1393
BspPI GGATC 4 cut(s) 455, 501, 1034, 1438
BsrDI GCAATG 2 cut(s) 355, 895
BsrFI RCCGGY 1 cut(s) 1452
BsrGI TGTACA 2 cut(s) 315, 664
BsrI ACTGG 3 cut(s) 465, 596, 1348
BssAI RCCGGY 1 cut(s) 1452
BssECI CCNNGG 6 cut(s) 200, 246, 548, 549, 880, 935
BssMI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
BssNI GRCGYC 2 cut(s) 92, 140
BssT1I CCWWGG 2 cut(s) 200, 880
Bst2UI CCWGG 2 cut(s) 550, 937
Bst4CI ACNGT 1 cut(s) 1082
Bst6I CTCTTC 4 cut(s) 19, 556, 900, 1485
BstACI GRCGYC 2 cut(s) 92, 140
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstAUI TGTACA 2 cut(s) 315, 664
BstBAI YACGTR 1 cut(s) 1548
BstDEI CTNAG 8 cut(s) 234, 755, 826, 839, 894, 1022, 1086, 1163
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 1421
BstF5I GGATG 5 cut(s) 129, 221, 506, 924, 1381
BstKTI GATC 5 cut(s) 463, 496, 1042, 1056, 1446
BstMAI GTCTC 3 cut(s) 718, 1133, 1219
BstMBI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 692, 1106
BstNI CCWGG 2 cut(s) 550, 937
BstNSI RCATGY 2 cut(s) 616, 859
BstPI GGTNACC 1 cut(s) 1421
BstSCI CCNGG 2 cut(s) 548, 935
BstSFI CTRYAG 2 cut(s) 396, 1389
BstV1I GCAGC 4 cut(s) 66, 69, 386, 1208
BstV2I GAAGAC 1 cut(s) 1310
BstX2I RGATCY 1 cut(s) 1053
BstXI CCANNNNNNTGG 1 cut(s) 603
BstYI RGATCY 1 cut(s) 1053
Bsu36I CCTNAGG 1 cut(s) 1163
BsuRI GGCC 5 cut(s) 199, 220, 290, 1278, 1456
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 1265
BtrI CACGTC 1 cut(s) 159
BtsCI GGATG 5 cut(s) 129, 221, 506, 924, 1381
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 2 cut(s) 472, 1398
Cfr10I RCCGGY 1 cut(s) 1452
Cfr13I GGNCC 3 cut(s) 197, 268, 818
Csp6I GTAC 5 cut(s) 316, 665, 876, 1351, 1545
CviAII CATG 7 cut(s) 388, 589, 613, 856, 1258, 1406, 1417
CviQI GTAC 5 cut(s) 316, 665, 876, 1351, 1545
DdeI CTNAG 8 cut(s) 234, 755, 826, 839, 894, 1022, 1086, 1163
DpnI GATC 5 cut(s) 462, 495, 1041, 1055, 1445
DpnII GATC 5 cut(s) 460, 493, 1039, 1053, 1443
EaeI YGGCCR 2 cut(s) 218, 288
Eam1104I CTCTTC 4 cut(s) 19, 556, 900, 1485
EarI CTCTTC 4 cut(s) 19, 556, 900, 1485
Ecl136II GAGCTC 1 cut(s) 436
Eco130I CCWWGG 2 cut(s) 200, 880
Eco24I GRGCYC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 2 cut(s) 268, 818
Eco53kI GAGCTC 1 cut(s) 436
Eco57I CTGAAG 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 1163
Eco88I CYCGRG 1 cut(s) 431
Eco91I GGTNACC 1 cut(s) 1421
EcoICRI GAGCTC 1 cut(s) 436
EcoO109I RGGNCCY 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 1421
EcoRI GAATTC 1 cut(s) 1379
EcoRII CCWGG 2 cut(s) 548, 935
EcoRV GATATC 1 cut(s) 1231
EcoT14I CCWWGG 2 cut(s) 200, 880
EcoT38I GRGCYC 1 cut(s) 438
ErhI CCWWGG 2 cut(s) 200, 880
FaeI CATG 7 cut(s) 391, 592, 616, 859, 1261, 1409, 1420
FatI CATG 7 cut(s) 387, 588, 612, 855, 1257, 1405, 1416
FauNDI CATATG 1 cut(s) 1246
Fnu4HI GCNGC 5 cut(s) 80, 83, 375, 1065, 1197
FokI GGATG 5 cut(s) 136, 228, 493, 931, 1388
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 5 cut(s) 80, 83, 375, 1065, 1197
FspBI CTAG 3 cut(s) 201, 572, 687
GluI GCNGC 5 cut(s) 80, 83, 375, 1065, 1197
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 5 cut(s) 199, 220, 290, 1278, 1456
HapII CCGG 3 cut(s) 271, 287, 1453
Hin1I GRCGYC 2 cut(s) 92, 140
Hin1II CATG 7 cut(s) 391, 592, 616, 859, 1261, 1409, 1420
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 5 cut(s) 357, 634, 718, 759, 1141
HpaII CCGG 3 cut(s) 271, 287, 1453
HphI GGTGA 1 cut(s) 1082
Hpy166II GTNNAC 4 cut(s) 156, 316, 356, 912
Hpy188III TCNNGA 6 cut(s) 108, 236, 431, 476, 1031, 1300
Hpy8I GTNNAC 4 cut(s) 156, 316, 356, 912
Hpy99I CGWCG 6 cut(s) 94, 97, 139, 142, 145, 259
HpyAV CCTTC 6 cut(s) 10, 108, 783, 1268, 1317, 1390
HpyCH4III ACNGT 1 cut(s) 1082
HpyCH4IV ACGT 5 cut(s) 92, 140, 158, 446, 1547
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 1106
HpyF3I CTNAG 8 cut(s) 234, 755, 826, 839, 894, 1022, 1086, 1163
HpySE526I ACGT 5 cut(s) 92, 140, 158, 446, 1547
Hsp92I GRCGYC 2 cut(s) 92, 140
Hsp92II CATG 7 cut(s) 391, 592, 616, 859, 1261, 1409, 1420
Kzo9I GATC 5 cut(s) 460, 493, 1039, 1053, 1443
Lsp1109I GCAGC 4 cut(s) 66, 69, 386, 1208
LweI GCATC 2 cut(s) 673, 722
MaeI CTAG 3 cut(s) 201, 572, 687
MaeII ACGT 5 cut(s) 92, 140, 158, 446, 1547
MaeIII GTNAC 2 cut(s) 415, 1421
MalI GATC 5 cut(s) 462, 495, 1041, 1055, 1445
MboI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 1053
MhlI GDGCHC 3 cut(s) 438, 754, 1030
MlyI GAGTC 2 cut(s) 351, 1135
MmeI TCCRAC 1 cut(s) 1200
MseI TTAA 2 cut(s) 555, 806
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 3 cut(s) 271, 287, 1453
MspR9I CCNGG 2 cut(s) 550, 937
MunI CAATTG 1 cut(s) 170
MvaI CCWGG 2 cut(s) 550, 937
MwoI GCNNNNNNNGC 2 cut(s) 692, 1106
NdeI CATATG 1 cut(s) 1246
NdeII GATC 5 cut(s) 460, 493, 1039, 1053, 1443
NlaIII CATG 7 cut(s) 391, 592, 616, 859, 1261, 1409, 1420
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 761
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 2 cut(s) 616, 859
PasI CCCWGGG 1 cut(s) 549
PciI ACATGT 2 cut(s) 612, 855
PfeI GAWTC 3 cut(s) 634, 718, 759
PflFI GACNNNGTC 1 cut(s) 139
PkrI GCNGC 5 cut(s) 81, 84, 376, 1066, 1198
PleI GAGTC 2 cut(s) 351, 1135
PpsI GAGTC 2 cut(s) 351, 1135
Ppu21I YACGTR 1 cut(s) 1548
PscI ACATGT 2 cut(s) 612, 855
Psp124BI GAGCTC 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 548, 935
PspEI GGTNACC 1 cut(s) 1421
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 2 cut(s) 548, 935
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 197, 268, 818
PstI CTGCAG 1 cut(s) 1393
PsuI RGATCY 1 cut(s) 1053
PsyI GACNNNGTC 1 cut(s) 139
RsaI GTAC 5 cut(s) 317, 666, 877, 1352, 1546
RsaNI GTAC 5 cut(s) 316, 665, 876, 1351, 1545
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 2 cut(s) 555, 806
SatI GCNGC 5 cut(s) 80, 83, 375, 1065, 1197
Sau3AI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
Sau96I GGNCC 3 cut(s) 197, 268, 818
SchI GAGTC 2 cut(s) 351, 1135
ScrFI CCNGG 2 cut(s) 550, 937
SduI GDGCHC 3 cut(s) 438, 754, 1030
SfaNI GCATC 2 cut(s) 673, 722
SfcI CTRYAG 2 cut(s) 396, 1389
SinI GGWCC 2 cut(s) 268, 818
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SsiI CCGC 1 cut(s) 1065
SspMI CTAG 3 cut(s) 201, 572, 687
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 548, 935
StyI CCWWGG 2 cut(s) 200, 880
TaaI ACNGT 1 cut(s) 1082
TaiI ACGT 5 cut(s) 95, 143, 161, 449, 1550
TaqI TCGA 3 cut(s) 107, 438, 730
TaqII GACCGA 1 cut(s) 93
TatI WGTACW 3 cut(s) 315, 664, 1350
TauI GCSGC 1 cut(s) 1067
TfiI GAWTC 3 cut(s) 634, 718, 759
Tru1I TTAA 2 cut(s) 555, 806
Tru9I TTAA 2 cut(s) 555, 806
TscAI CASTG 2 cut(s) 472, 1398
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 4 cut(s) 79, 82, 374, 1196
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 5 cut(s) 128, 490, 824, 861, 1392
TspGWI ACGGA 2 cut(s) 271, 1266
TspRI CASTG 2 cut(s) 472, 1398
Tth111I GACNNNGTC 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 268, 818
XapI RAATTY 2 cut(s) 742, 1379
XceI RCATGY 2 cut(s) 616, 859
XcmI CCANNNNNNNNNTGG 2 cut(s) 600, 1355
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 3 cut(s) 201, 572, 687
ZraI GACGTC 2 cut(s) 93, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.