Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002611

Physical Location & Seq

Genomic Coordinates Reverse (-)

64047998 .. 64048633

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0509900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGACCCGCCACCAACACCAAGGACTCCGCCAGCTCACCAACTCTTAGAGATTGCGTAGTACTTCTTTTTTTACTGCTGGCAATCATGGCAATCGTGCTTATGATACTGGTTCCAATAGTACTTATGAATTTACCTGATCAAACCCTAGAGTTTCAGATCAACTCTCTTTCAGTCTCTCCGTTTCTAGTCTTCTCCTCCTTCATCACTGCCAATTGGAACATCACTTTACTTGCTAGAAACCCTTACAAGGACAAGATCGTCTACTATGACGCCATTGAAGTTTCGGTTTTCTATCACAAGCTGTTTCTAACTTCGTCGAAGATAGCTTTAAAGGAATCCTTGTATCAAAGTCCCAAGAACGAATCAATGCTGCAGGCGAATCTCGCAATCTCATCAGTGTATGTTGGGGATTGGATGGAGGCAGCGGCCATGCTCGAGGAGTGGAGAAACAAAGTTGTGGGGTTCGGCGTCAGAGCAGATGCTATTGTCAGGTTAGGCGACAGTGACAAGGATTTGGAGAGGAAGCTGGTGAGGGCCAACTGTGATTATTTGAAGGTTGAGATTTCACCGAATCAAATGGCGGGAGTCTTGTTGGGTGGATCAAGAAACTGTGATGTCATAGAAGTGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

211

Amino Acids

23.63

Weight (kDa)

5.49

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02250 AT5G15740
fragaria_vesca	FvH4_5g13360 FvH4_5g13360 FvH4_6g46300 FvH4_6g46300
malus_domestica	MD06G1206100.v1.1 MD09G1075800.v1.1 MD14G1217000.v1.1 MD17G1066500.v1.1
prunus_persica	Prupe.3G248200_v2.0.a1 Prupe.3G248200_v2.0.a1 Prupe.3G248200_v2.0.a1 Prupe.5G210400_v2.0.a1 Prupe.5G210400_v2.0.a1
pyrus_communis	pycom09g00320 pycom14g17970 pycom17g06700
rosa_chinensis	RchiOBHm_Chr2g0164751 RchiOBHm_Chr7g0183771
rosa_laevigata	RLG00000005024 RLG00000021482
rosa_multiflora	Rmu_sc0000946.1_g000016 Rmu_sc0003610.1_g000037
rosa_roxburghii	Rroxscaffold_2G00086330 Rroxscaffold_3G00270220
rosa_rugosa	Rorug02G0509800 Rorug02G0509800 Rorug02G0509900 Rorug06G0460200 Rorug06G0460300 Rorug06G0460400
rosa_samantha	Rh2AG578200 Rh2BG589300 Rh2CG559900 Rh2DG599700 Rh7CG062600 Rh7DG061000
rosa_wichuraiana	Rw2G048000 Rw7G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	4 cut(s)	9, 30, 428, 584
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	130
AcyI	GRCGYC	2 cut(s)	273, 471
AfaI	GTAC	3 cut(s)	63, 123, 632
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	281, 556
AluBI	AGCT	4 cut(s)	36, 304, 329, 529
AluI	AGCT	4 cut(s)	36, 304, 329, 529
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	429, 537
ApeKI	GCWGC	2 cut(s)	373, 425
ApoI	RAATTY	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	537
AsuHPI	GGTGA	3 cut(s)	30, 544, 561
AvaI	CYCGRG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	360, 437
BccI	CCATC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	4 cut(s)	149, 188, 237, 634
BfmI	CTRYAG	1 cut(s)	374
BisI	GCNGC	3 cut(s)	374, 426, 429
BlsI	GCNGC	3 cut(s)	375, 427, 430
BmcAI	AGTACT	2 cut(s)	63, 123
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	184
BsaHI	GRCGYC	2 cut(s)	273, 471
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	423
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	187, 455
BseXI	GCAGC	2 cut(s)	360, 437
BshFI	GGCC	2 cut(s)	431, 539
BsiHKCI	CYCGRG	1 cut(s)	437
BslFI	GGGAC	1 cut(s)	339
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	431, 539
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	139, 159, 258, 602
BspACI	CCGC	4 cut(s)	9, 30, 428, 584
BspANI	GGCC	2 cut(s)	431, 539
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	378
BspPI	GGATC	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	139, 159, 258, 602
BssNI	GRCGYC	2 cut(s)	273, 471
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	506, 545, 614
BstACI	GRCGYC	2 cut(s)	273, 471
BstC8I	GCNNGC	3 cut(s)	34, 81, 378
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	423
BstKTI	GATC	4 cut(s)	142, 162, 261, 605
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	4 cut(s)	139, 159, 258, 602
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 386
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	360, 437
BstV2I	GAAGAC	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	431, 539
BtsCI	GGATG	1 cut(s)	423
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	3 cut(s)	207, 405, 511
Cac8I	GCNNGC	3 cut(s)	34, 81, 378
Cfr13I	GGNCC	1 cut(s)	537
CseI	GACGC	2 cut(s)	281, 460
Csp6I	GTAC	3 cut(s)	62, 122, 631
CviAII	CATG	2 cut(s)	88, 433
CviJI	RGCY	6 cut(s)	36, 304, 329, 431, 529, 539
CviKI_1	RGCY	6 cut(s)	36, 304, 329, 431, 529, 539
CviQI	GTAC	3 cut(s)	62, 122, 631
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	141, 161, 260, 604
DpnII	GATC	4 cut(s)	139, 159, 258, 602
DraI	TTTAAA	1 cut(s)	333
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	429
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	91, 436
FaiI	YATR	7 cut(s)	89, 104, 128, 270, 405, 434, 623
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	339
FatI	CATG	2 cut(s)	87, 432
FauI	CCCGC	2 cut(s)	16, 577
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	3 cut(s)	374, 426, 429
FokI	GGATG	1 cut(s)	430
Fsp4HI	GCNGC	3 cut(s)	374, 426, 429
FspBI	CTAG	4 cut(s)	149, 188, 237, 634
GluI	GCNGC	3 cut(s)	374, 426, 429
HaeIII	GGCC	2 cut(s)	431, 539
HgaI	GACGC	2 cut(s)	281, 460
Hin1I	GRCGYC	2 cut(s)	273, 471
Hin1II	CATG	2 cut(s)	91, 436
HinfI	GANTC	6 cut(s)	26, 338, 365, 382, 574, 588
HphI	GGTGA	3 cut(s)	30, 544, 561
Hpy166II	GTNNAC	2 cut(s)	265, 631
Hpy188I	TCNGA	2 cut(s)	159, 476
Hpy188III	TCNNGA	1 cut(s)	606
Hpy8I	GTNNAC	2 cut(s)	265, 631
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	211, 550
HpyCH4III	ACNGT	3 cut(s)	506, 545, 614
HpyCH4V	TGCA	1 cut(s)	376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 386
HpyF3I	CTNAG	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	273, 471
Hsp92II	CATG	2 cut(s)	91, 436
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	139, 159, 258, 602
LpnPI	CCDG	7 cut(s)	46, 65, 95, 150, 362, 478, 515
Lsp1109I	GCAGC	2 cut(s)	360, 437
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	4 cut(s)	149, 188, 237, 634
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	4 cut(s)	141, 161, 260, 604
MboI	GATC	4 cut(s)	139, 159, 258, 602
MboII	GAAGA	2 cut(s)	184, 334
MfeI	CAATTG	1 cut(s)	214
MluCI	AATT	2 cut(s)	130, 214
MlyI	GAGTC	2 cut(s)	20, 597
MnlI	CCTC	5 cut(s)	208, 415, 433, 516, 528
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	428
MunI	CAATTG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	89, 386
NdeII	GATC	4 cut(s)	139, 159, 258, 602
NlaIII	CATG	2 cut(s)	91, 436
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	437
PfeI	GAWTC	4 cut(s)	338, 365, 382, 574
PkrI	GCNGC	3 cut(s)	375, 427, 430
PleI	GAGTC	2 cut(s)	20, 596
PpsI	GAGTC	2 cut(s)	20, 596
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	537
PspXI	VCTCGAGB	1 cut(s)	437
PstI	CTGCAG	1 cut(s)	378
RsaI	GTAC	3 cut(s)	63, 123, 632
RsaNI	GTAC	3 cut(s)	62, 122, 631
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	3 cut(s)	374, 426, 429
Sau3AI	GATC	4 cut(s)	139, 159, 258, 602
Sau96I	GGNCC	1 cut(s)	537
ScaI	AGTACT	2 cut(s)	63, 123
SchI	GAGTC	2 cut(s)	20, 597
SetI	ASST	7 cut(s)	38, 139, 306, 331, 497, 531, 561
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	374
Sfr274I	CTCGAG	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	130, 214
SsiI	CCGC	4 cut(s)	9, 30, 428, 584
SspMI	CTAG	4 cut(s)	149, 188, 237, 634
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	3 cut(s)	506, 545, 614
TaqI	TCGA	2 cut(s)	320, 438
TasI	AATT	2 cut(s)	130, 214
TatI	WGTACW	3 cut(s)	61, 121, 630
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	4 cut(s)	338, 365, 382, 574
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	3 cut(s)	214, 405, 511
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	2 cut(s)	373, 425
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	2 cut(s)	143, 193
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	214, 405, 511
XapI	RAATTY	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	264
XspI	CTAG	4 cut(s)	149, 188, 237, 634
ZrmI	AGTACT	2 cut(s)	63, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.