Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002611

Physical Location & Seq

Genomic Coordinates Reverse (-)

23857304 .. 23861432

Gene Structure 4129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G248200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGTGCAAAGCAGAGGACTTTGAGAAGTGTGATTATAGATCAGAGGGGAAGATGGGATTTAAGTTCTTGGGTAGAGTTAAAAAATTGAAGAGTTCGATATTGAAGACGAACGCATGGTTGTTGATCATTCGGGCGATTGTTACAGCTTTGGTGTGGGCTTCTGCAGTTCAGCTGGTTGGAGTATGGTTGTTAAGGGGGCCAAGTTTGTTCAAGGTTTGTCCTCCCTGCACTCAATTAGAGTTGCCTGCGCATGCTGAATTGGTTAAGCTTCCAATCCCAATTGCTCTCCCACCAAAAAGGGTTTACAAGAATAATGGTTATCTCATGGTTTCTTGCAATGGAGGACTGAATCAAATGCGAGCCGCCATCTGTGATATGGTTGCAATTGCCAGATACTTAAATGTGACTCTTATTGTTCCAGAGCTGGATAAAAACTCTTTTTGGGCGGCAAGTGAGTTTCAAGACATCTTTGATGTTGATCATTTCATTGCATCCTTGAGAGATGAGGTTCGGATATTAAAGGAACTGCCGCCAAGGGTCAGGAAAAGAGCTGTATACTCGTTGCCACCTATTAGTTGGTCCAACATTTCCTACTACTTTCATCAGATCCTACCTCTGGTGCAGAAGTATAAAGTAGTACATTTGAATAAAACCGATGCTCGGTTAGCTAATAATGGGCTCCCTCTTGAGGTTCAGAAGTTGCGCTGCCGAGTTAATTTCCATGCTCTGAGATTCACTTCCCAGATAGAGGAAATTGGCAGAAAGCTTCTCAGAATTTTGAGAGAAAAAGGCCCTTTTCTGGCCCTTCATCTCAGATATGAAATGGATATGTTGGCATTCTCTGGCTGTAGTCATGGTTGCAACAATGATGAGGAAGAAGAACTCACAAGAATGAGATATGCTAACCCCTTGTGGAAGATAAAAGACATAAATTCTGAAATGAAAAGGCTAGAAGGTTTGTGCCCGCTAACACCAGAGGAAACTGCTCTAGTTTTGGTTGCACTTGGTATTGACCACAATGTCCAAATTTATATTGCTGCTGGAGAAATATATGGTGGAAACAGAAGGATGGAAAGTTTGAAATCTGCTTTTCCTAACTTGGTCAGAAAAGAGACTCTGCTGGAGCCTTCGGACTTGAGGCTTTTCCCAAACCACTCTTCTCAAAGGGCAGCATTGGACTATCTTGTCTCCCTAGAGAGTGATATATTTATTCCTACATACGATGGAAATATGGCTAAAGTTGTTGAAGGCCATCGGAGATTCTTAGGTTTCAAAAAGACTGTTTTATTGGACAGAAGACTTCTGATTGGTTTAATAGAACAATTCAGTAGTGGATCATTGAGCTGGGATGAGTTCTCTTCTATTGTAAAGGAAGCTCATGCTGATCGGATGGGGAGGCCGAAGAAACGAGTTTCTATTGCAGATAAACCAAAGGAAGAAGATTATTTCTACTCAAATCCGCATGAATGTTTACAACTGTTAGATGAGCCATTGAGAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

502

Amino Acids

57.32

Weight (kDa)

9.06

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02250 AT5G15740
fragaria_vesca	FvH4_5g13360 FvH4_5g13360 FvH4_6g46300 FvH4_6g46300
malus_domestica	MD06G1206100.v1.1 MD09G1075800.v1.1 MD14G1217000.v1.1 MD17G1066500.v1.1
prunus_persica	Prupe.3G248200_v2.0.a1 Prupe.3G248200_v2.0.a1 Prupe.3G248200_v2.0.a1 Prupe.5G210400_v2.0.a1 Prupe.5G210400_v2.0.a1
pyrus_communis	pycom09g00320 pycom14g17970 pycom17g06700
rosa_chinensis	RchiOBHm_Chr2g0164751 RchiOBHm_Chr7g0183771
rosa_laevigata	RLG00000005024 RLG00000021482
rosa_multiflora	Rmu_sc0000946.1_g000016 Rmu_sc0003610.1_g000037
rosa_roxburghii	Rroxscaffold_2G00086330 Rroxscaffold_3G00270220
rosa_rugosa	Rorug02G0509800 Rorug02G0509800 Rorug02G0509900 Rorug06G0460200 Rorug06G0460300 Rorug06G0460400
rosa_samantha	Rh2AG578200 Rh2BG589300 Rh2CG559900 Rh2DG599700 Rh7CG062600 Rh7DG061000
rosa_wichuraiana	Rw2G048000 Rw7G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1019, 1184
Acc16I	TGCGCA	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	555
AciI	CCGC	5 cut(s)	363, 446, 530, 965, 1460
AclWI	GGATC	2 cut(s)	601, 1342
AcsI	RAATTY	3 cut(s)	774, 931, 1026
AfaI	GTAC	1 cut(s)	639
AfiI	CCNNNNNNNGG	5 cut(s)	616, 660, 688, 748, 799
AgsI	TTSAA	8 cut(s)	88, 103, 211, 461, 646, 1081, 1247, 1273
AjuI	GAANNNNNNNTTGG	2 cut(s)	1141, 1173
AluBI	AGCT	9 cut(s)	146, 172, 268, 424, 551, 668, 766, 1344, 1376
AluI	AGCT	9 cut(s)	146, 172, 268, 424, 551, 668, 766, 1344, 1376
Alw26I	GTCTC	2 cut(s)	1106, 1192
AlwI	GGATC	2 cut(s)	601, 1342
AoxI	GGCC	5 cut(s)	197, 790, 801, 1249, 1397
ApeKI	GCWGC	3 cut(s)	705, 1037, 1169
ApoI	RAATTY	3 cut(s)	774, 931, 1026
AspLEI	GCGC	2 cut(s)	250, 705
AspS9I	GGNCC	4 cut(s)	197, 579, 791, 802
AvaII	GGWCC	1 cut(s)	579
BaeGI	GKGCMC	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	681
BbsI	GAAGAC	2 cut(s)	110, 1303
BbvI	GCAGC	3 cut(s)	692, 1024, 1181
BccI	CCATC	6 cut(s)	46, 374, 1063, 1217, 1260, 1384
BclI	TGATCA	2 cut(s)	123, 478
BcoDI	GTCTC	2 cut(s)	1106, 1192
BfaI	CTAG	3 cut(s)	950, 989, 1193
BfmI	CTRYAG	2 cut(s)	162, 847
BisI	GCNGC	6 cut(s)	363, 447, 530, 706, 1038, 1170
BlsI	GCNGC	6 cut(s)	364, 448, 531, 707, 1039, 1171
Bme18I	GGWCC	1 cut(s)	579
BmgT120I	GGNCC	4 cut(s)	197, 579, 791, 802
BmiI	GGNNCC	3 cut(s)	198, 680, 1125
BmsI	GCATC	2 cut(s)	500, 646
BpiI	GAAGAC	2 cut(s)	110, 1303
BpmI	CTGGAG	2 cut(s)	1062, 1142
BpuEI	CTTGAG	3 cut(s)	517, 707, 1156
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	5 cut(s)	616, 660, 688, 748, 799
Bse3DI	GCAATG	2 cut(s)	343, 486
Bse8I	GATNNNNATC	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	4 cut(s)	491, 1074, 1354, 1395
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	5 cut(s)	616, 660, 688, 748, 799
BseMI	GCAATG	2 cut(s)	343, 486
BseMII	CTCAG	3 cut(s)	719, 784, 826
BseSI	GKGCMC	1 cut(s)	965
BseXI	GCAGC	3 cut(s)	692, 1024, 1181
BseYI	CCCAGC	1 cut(s)	1344
BsgI	GTGCAG	2 cut(s)	211, 641
BshFI	GGCC	5 cut(s)	199, 792, 803, 1251, 1399
BslI	CCNNNNNNNGG	5 cut(s)	616, 660, 688, 748, 799
BsmAI	GTCTC	2 cut(s)	1106, 1192
BsmI	GAATGC	1 cut(s)	836
BsnI	GGCC	5 cut(s)	199, 792, 803, 1251, 1399
Bsp1286I	GDGCHC	2 cut(s)	681, 965
Bsp143I	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
BspACI	CCGC	5 cut(s)	363, 446, 530, 965, 1460
BspANI	GGCC	5 cut(s)	199, 792, 803, 1251, 1399
BspCNI	CTCAG	3 cut(s)	720, 783, 825
BspLI	GGNNCC	3 cut(s)	198, 680, 1125
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	601, 1342
BsrDI	GCAATG	2 cut(s)	343, 486
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
BssNAI	GTATAC	1 cut(s)	556
BssT1I	CCWWGG	1 cut(s)	533
Bst1107I	GTATAC	1 cut(s)	556
Bst4CI	ACNGT	2 cut(s)	1282, 1479
Bst6I	CTCTTC	3 cut(s)	83, 1162, 1363
BstC8I	GCNNGC	4 cut(s)	246, 252, 360, 965
BstDEI	CTNAG	4 cut(s)	728, 770, 812, 1264
BstF5I	GGATG	4 cut(s)	491, 1074, 1354, 1395
BstHHI	GCGC	2 cut(s)	250, 705
BstKTI	GATC	6 cut(s)	41, 126, 481, 609, 1337, 1387
BstMAI	GTCTC	2 cut(s)	1106, 1192
BstMBI	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	254
BstSFI	CTRYAG	2 cut(s)	162, 847
BstSLI	GKGCMC	1 cut(s)	965
BstV1I	GCAGC	3 cut(s)	692, 1024, 1181
BstV2I	GAAGAC	2 cut(s)	110, 1303
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BstZ17I	GTATAC	1 cut(s)	556
BsuRI	GGCC	5 cut(s)	199, 792, 803, 1251, 1399
BtsCI	GGATG	4 cut(s)	491, 1074, 1354, 1395
Cac8I	GCNNGC	4 cut(s)	246, 252, 360, 965
CfoI	GCGC	2 cut(s)	250, 705
Cfr13I	GGNCC	4 cut(s)	197, 579, 791, 802
Csp6I	GTAC	1 cut(s)	638
CviAII	CATG	8 cut(s)	114, 251, 325, 722, 854, 1379, 1463, 1503
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	4 cut(s)	728, 770, 812, 1264
DpnI	GATC	6 cut(s)	40, 125, 480, 608, 1336, 1386
DpnII	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
DrdI	GACNNNNNNGTC	2 cut(s)	1019, 1184
DseDI	GACNNNNNNGTC	2 cut(s)	1019, 1184
Eam1104I	CTCTTC	3 cut(s)	83, 1162, 1363
EarI	CTCTTC	3 cut(s)	83, 1162, 1363
Eco130I	CCWWGG	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	579
EcoO109I	RGGNCCY	1 cut(s)	791
EcoT14I	CCWWGG	1 cut(s)	533
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	8 cut(s)	117, 254, 328, 725, 857, 1382, 1466, 1506
FatI	CATG	8 cut(s)	113, 250, 324, 721, 853, 1378, 1462, 1502
FauI	CCCGC	1 cut(s)	972
FbaI	TGATCA	2 cut(s)	123, 478
FblI	GTMKAC	1 cut(s)	555
Fnu4HI	GCNGC	6 cut(s)	363, 447, 530, 706, 1038, 1170
FokI	GGATG	4 cut(s)	478, 1081, 1361, 1402
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	6 cut(s)	363, 447, 530, 706, 1038, 1170
FspBI	CTAG	3 cut(s)	950, 989, 1193
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	2 cut(s)	249, 704
GluI	GCNGC	6 cut(s)	363, 447, 530, 706, 1038, 1170
GsaI	CCCAGC	1 cut(s)	1348
GsuI	CTGGAG	2 cut(s)	1062, 1142
HaeIII	GGCC	5 cut(s)	199, 792, 803, 1251, 1399
HhaI	GCGC	2 cut(s)	250, 705
Hin1II	CATG	8 cut(s)	117, 254, 328, 725, 857, 1382, 1466, 1506
Hin6I	GCGC	2 cut(s)	248, 703
HinP1I	GCGC	2 cut(s)	248, 703
HindIII	AAGCTT	2 cut(s)	266, 764
HinfI	GANTC	5 cut(s)	349, 406, 732, 1114, 1260
Hpy166II	GTNNAC	3 cut(s)	304, 556, 1472
Hpy188III	TCNNGA	4 cut(s)	419, 461, 541, 686
Hpy8I	GTNNAC	3 cut(s)	304, 556, 1472
HpyAV	CCTTC	5 cut(s)	815, 947, 1059, 1137, 1241
HpyCH4III	ACNGT	2 cut(s)	1282, 1479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	4 cut(s)	728, 770, 812, 1264
Hsp92II	CATG	8 cut(s)	117, 254, 328, 725, 857, 1382, 1466, 1506
HspAI	GCGC	2 cut(s)	248, 703
Ksp22I	TGATCA	2 cut(s)	123, 478
Kzo9I	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
LmnI	GCTCC	2 cut(s)	684, 1123
Lsp1109I	GCAGC	3 cut(s)	692, 1024, 1181
LweI	GCATC	2 cut(s)	500, 646
MaeI	CTAG	3 cut(s)	950, 989, 1193
MaeIII	GTNAC	2 cut(s)	139, 403
MalI	GATC	6 cut(s)	40, 125, 480, 608, 1336, 1386
MboI	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
MfeI	CAATTG	2 cut(s)	279, 384
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	2 cut(s)	681, 965
MlyI	GAGTC	2 cut(s)	400, 1108
MmeI	TCCRAC	2 cut(s)	157, 606
MseI	TTAA	8 cut(s)	60, 78, 191, 264, 398, 518, 714, 1313
MslI	CAYNNNNRTG	1 cut(s)	890
MspA1I	CMGCKG	1 cut(s)	172
MunI	CAATTG	2 cut(s)	279, 384
Mva1269I	GAATGC	1 cut(s)	836
MwoI	GCNNNNNNNGC	1 cut(s)	665
NdeII	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
NlaIII	CATG	8 cut(s)	117, 254, 328, 725, 857, 1382, 1466, 1506
NlaIV	GGNNCC	3 cut(s)	198, 680, 1125
NmeAIII	GCCGAG	1 cut(s)	734
NmuCI	GTSAC	1 cut(s)	403
NsbI	TGCGCA	1 cut(s)	249
NspI	RCATGY	1 cut(s)	254
PaeI	GCATGC	1 cut(s)	254
PctI	GAATGC	1 cut(s)	836
PfeI	GAWTC	3 cut(s)	349, 732, 1260
PkrI	GCNGC	6 cut(s)	364, 448, 531, 707, 1039, 1171
PleI	GAGTC	2 cut(s)	400, 1108
PpsI	GAGTC	2 cut(s)	400, 1108
PspFI	CCCAGC	1 cut(s)	1344
PspN4I	GGNNCC	3 cut(s)	198, 680, 1125
PspPI	GGNCC	4 cut(s)	197, 579, 791, 802
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
RseI	CAYNNNNRTG	1 cut(s)	890
SaqAI	TTAA	8 cut(s)	60, 78, 191, 264, 398, 518, 714, 1313
SatI	GCNGC	6 cut(s)	363, 447, 530, 706, 1038, 1170
Sau3AI	GATC	6 cut(s)	38, 123, 478, 606, 1334, 1384
Sau96I	GGNCC	4 cut(s)	197, 579, 791, 802
SchI	GAGTC	2 cut(s)	400, 1108
SduI	GDGCHC	2 cut(s)	681, 965
SfaNI	GCATC	2 cut(s)	500, 646
SfcI	CTRYAG	2 cut(s)	162, 847
SinI	GGWCC	1 cut(s)	579
SmiMI	CAYNNNNRTG	1 cut(s)	890
SmlI	CTYRAG	3 cut(s)	496, 686, 1135
SmoI	CTYRAG	3 cut(s)	496, 686, 1135
SphI	GCATGC	1 cut(s)	254
SsiI	CCGC	5 cut(s)	363, 446, 530, 965, 1460
SspMI	CTAG	3 cut(s)	950, 989, 1193
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	2 cut(s)	1282, 1479
TaqI	TCGA	1 cut(s)	95
TatI	WGTACW	1 cut(s)	637
TauI	GCSGC	3 cut(s)	365, 449, 532
TfiI	GAWTC	3 cut(s)	349, 732, 1260
Tru1I	TTAA	8 cut(s)	60, 78, 191, 264, 398, 518, 714, 1313
Tru9I	TTAA	8 cut(s)	60, 78, 191, 264, 398, 518, 714, 1313
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	705, 1037, 1169
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	6 cut(s)	475, 590, 797, 834, 956, 1479
VpaK11BI	GGWCC	1 cut(s)	579
XapI	RAATTY	3 cut(s)	774, 931, 1026
XceI	RCATGY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	2 cut(s)	373, 573
XmiI	GTMKAC	1 cut(s)	555
XspI	CTAG	3 cut(s)	950, 989, 1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.