Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002611

Physical Location & Seq

Genomic Coordinates Forward (+)

4853893 .. 4856335

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGCTGCTGATCATCCATTTATGAGATGTTGGCCGATCGTGACGGCGTTGGTGTGGGCGTCGGCGGTGCAGCTGGTTGGGATTTGGTTGATTAGGGGGCCTAGTTTGTTCAATGTTTGGCCTCCTTGCACCCACTTGGAATTGCCTGCTCATGCTGTAGAATTGGCTAATAAGCTTCCAATGCCAATTGTTCTCCCACCAAAGAGGGTTTACAAAAACAATGGCTATCTCATGGTTTCTTGCAATGGAGGGCTGAATCAAATGCGAGCGGCAATCTGTGATATGGTTTCAGTTGCCAGATACTTGAATGTCACCCTTATAGTTCCTGAGCTGGATAAAAACTCCTTTTGGGCTGCGAGTGAGTTTCAGGACATTTTCGATGTTGATCATTTCATTGCATCGTTGAGAGACGAGGTTCGGATATTGAGGAAATTGCCACCAAAGCTCAAGAAAAGACCTGCATACTCGTTGCCACCAGTTAGTTGGTCTAACATGTCCTACTACCTTCAGCAGATCCTGCCTCTGGTGCAGAAGTATAAAGTAGTACATTTGAATAAAACCGATGCTCGAGTAGCTAACAATGGGCTACCTCTGGAGTTCCAGAAGCTGCGCTGCAGGGTTAATTTCCATGCTCTGAGATTCACTTCCCAGATAGAGGAAGTTGGTAGAAAGCTTGTCGGAATTTTGAGAGAAAAAGGCCCTTTTCTGGCTCTTCATCTCCGATATGAAATGGATATGTTGGCATTCTCTGGCTGCAGTCATGGGTGCAGCAATGATGAGGTAGAAGAACTCACAAGAATGAGATATGCTAATCCTTTGTGGAAGATAAAAGACATAAATTCCGAAACAAAGAGGCTAGAAGGTTTGTGCCCACTAACACCAGAGGAAACTGCTCTAGTATTGGTTGCACTCGGTATTGATCACAATGTCCAGATTTATATTGCTGCTGGAGAAATGTATGGTGGAAACAGAAGGATGGAAGGTTTGAAAGCTGCTTTTCCGAATTTGGTCAGAAAAGAGACGCTGCTGGAGCCTTCGGATTTGAGGTTCTTCCCGAACCACTCTTCCCAAATGGCAGCATTGGACTATCTAGTCTCCCTAGAGAGTGATATATTTATTCCTACATATGATGGAAACATGGCTAAAGTTGTCGAAGGCCATCGCAGATTCTTAGGTTTCAAAAAGACAGTTTTATTGGACAGAAGGCTACTGATTGGATTAATAGAACAATTCAGCACTGGCTCATTGAGTTGGGATGAGTTCTCTTACATTGTGAAGGAAGCTCACGCCGAGCGAATGGGGAGCCCGAAGAAGCGAGTTTTGATCCCAGATAAACCCAAGGAGGAAGATTACTTCTACTCAAATCCACATGAATGTTTGCAACTGTTAGATGGACCCTTGAGAACCGGATCGATCTTCGCATGCCAAAAATATGGGTTTATTGTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

484

Amino Acids

55.08

Weight (kDa)

8.75

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02250 AT5G15740
fragaria_vesca	FvH4_5g13360 FvH4_5g13360 FvH4_6g46300 FvH4_6g46300
malus_domestica	MD06G1206100.v1.1 MD09G1075800.v1.1 MD14G1217000.v1.1 MD17G1066500.v1.1
prunus_persica	Prupe.3G248200_v2.0.a1 Prupe.3G248200_v2.0.a1 Prupe.3G248200_v2.0.a1 Prupe.5G210400_v2.0.a1 Prupe.5G210400_v2.0.a1
pyrus_communis	pycom09g00320 pycom14g17970 pycom17g06700
rosa_chinensis	RchiOBHm_Chr2g0164751 RchiOBHm_Chr7g0183771
rosa_laevigata	RLG00000005024 RLG00000021482
rosa_multiflora	Rmu_sc0000946.1_g000016 Rmu_sc0003610.1_g000037
rosa_roxburghii	Rroxscaffold_2G00086330 Rroxscaffold_3G00270220
rosa_rugosa	Rorug02G0509800 Rorug02G0509800 Rorug02G0509900 Rorug06G0460200 Rorug06G0460300 Rorug06G0460400
rosa_samantha	Rh2AG578200 Rh2BG589300 Rh2CG559900 Rh2DG599700 Rh7CG062600 Rh7DG061000
rosa_wichuraiana	Rw2G048000 Rw7G005060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1091
Acc36I	ACCTGC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	269
AciI	CCGC	2 cut(s)	65, 269
AclWI	GGATC	3 cut(s)	508, 1318, 1417
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	3 cut(s)	681, 838, 1003
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	3 cut(s)	523, 655, 706
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	5 cut(s)	112, 307, 553, 988, 1180
AloI	GAACNNNNNNTCC	4 cut(s)	1031, 1049, 1063, 1081
AluBI	AGCT	9 cut(s)	73, 175, 331, 445, 575, 607, 673, 992, 1283
AluI	AGCT	9 cut(s)	73, 175, 331, 445, 575, 607, 673, 992, 1283
Alw26I	GTCTC	3 cut(s)	402, 1013, 1099
AlwI	GGATC	3 cut(s)	508, 1318, 1417
AlwNI	CAGNNNCTG	2 cut(s)	517, 607
Ama87I	CYCGRG	1 cut(s)	567
AoxI	GGCC	5 cut(s)	32, 98, 119, 697, 1156
ApoI	RAATTY	3 cut(s)	681, 838, 1003
AseI	ATTAAT	1 cut(s)	1220
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	3 cut(s)	98, 698, 1394
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	1394
BaeGI	GKGCMC	1 cut(s)	872
BanII	GRGCYC	1 cut(s)	1307
BbsI	GAAGAC	1 cut(s)	1438
BccI	CCATC	4 cut(s)	970, 1124, 1167, 1385
BceAI	ACGGC	1 cut(s)	60
BclI	TGATCA	3 cut(s)	10, 385, 919
BcoDI	GTCTC	3 cut(s)	402, 1013, 1099
BfaI	CTAG	5 cut(s)	102, 857, 896, 1091, 1100
BfmI	CTRYAG	3 cut(s)	156, 613, 754
BfuAI	ACCTGC	1 cut(s)	466
Bme18I	GGWCC	1 cut(s)	1394
BmeT110I	CYCGRG	1 cut(s)	567
BmgT120I	GGNCC	3 cut(s)	98, 698, 1394
BmiI	GGNNCC	4 cut(s)	99, 1032, 1304, 1396
BmsI	GCATC	2 cut(s)	407, 553
BpiI	GAAGAC	1 cut(s)	1438
BpmI	CTGGAG	3 cut(s)	614, 969, 1049
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	431, 1420
Bsa29I	ATCGAT	1 cut(s)	1412
BsaBI	GATNNNNATC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	1338
BsaWI	WCCGGW	1 cut(s)	1406
Bsc4I	CCNNNNNNNGG	3 cut(s)	523, 655, 706
Bse1I	ACTGG	2 cut(s)	476, 1243
Bse3DI	GCAATG	3 cut(s)	250, 393, 778
Bse8I	GATNNNNATC	1 cut(s)	384
BseCI	ATCGAT	1 cut(s)	1412
BseDI	CCNNGG	1 cut(s)	1338
BseGI	GGATG	3 cut(s)	13, 981, 1261
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	523, 655, 706
BseMI	GCAATG	3 cut(s)	250, 393, 778
BseMII	CTCAG	2 cut(s)	318, 626
BseNI	ACTGG	2 cut(s)	476, 1243
BseSI	GKGCMC	1 cut(s)	872
BsgI	GTGCAG	3 cut(s)	89, 548, 787
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	5 cut(s)	34, 100, 121, 699, 1158
BshVI	ATCGAT	1 cut(s)	1412
BsiEI	CGRYCG	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	1407
BslI	CCNNNNNNNGG	3 cut(s)	523, 655, 706
BsmAI	GTCTC	3 cut(s)	402, 1013, 1099
BsmBI	CGTCTC	2 cut(s)	402, 1013
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	5 cut(s)	34, 100, 121, 699, 1158
BsoBI	CYCGRG	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	872, 1307
Bsp143I	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
BspACI	CCGC	2 cut(s)	65, 269
BspANI	GGCC	5 cut(s)	34, 100, 121, 699, 1158
BspCNI	CTCAG	2 cut(s)	319, 627
BspDI	ATCGAT	1 cut(s)	1412
BspLI	GGNNCC	4 cut(s)	99, 1032, 1304, 1396
BspMAI	CTGCAG	2 cut(s)	617, 758
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	3 cut(s)	508, 1318, 1417
BspQI	GCTCTTC	1 cut(s)	717
BsrBI	CCGCTC	1 cut(s)	269
BsrDI	GCAATG	3 cut(s)	250, 393, 778
BsrI	ACTGG	2 cut(s)	476, 1243
BssECI	CCNNGG	1 cut(s)	1338
BssMI	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	1338
Bst4CI	ACNGT	2 cut(s)	1189, 1386
Bst6I	CTCTTC	2 cut(s)	717, 1069
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	147, 267, 1423
BstDEI	CTNAG	3 cut(s)	327, 635, 1171
BstF5I	GGATG	3 cut(s)	13, 981, 1261
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	8 cut(s)	13, 39, 388, 516, 922, 1326, 1412, 1416
BstMAI	GTCTC	3 cut(s)	402, 1013, 1099
BstMBI	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	181, 442, 517, 526, 572, 1030
BstNSI	RCATGY	2 cut(s)	496, 1425
BstSFI	CTRYAG	3 cut(s)	156, 613, 754
BstSLI	GKGCMC	1 cut(s)	872
BstV2I	GAAGAC	1 cut(s)	1438
BstX2I	RGATCY	1 cut(s)	513
BstXI	CCANNNNNNTGG	2 cut(s)	483, 1433
BstYI	RGATCY	1 cut(s)	513
Bsu15I	ATCGAT	1 cut(s)	1412
BsuRI	GGCC	5 cut(s)	34, 100, 121, 699, 1158
BsuTUI	ATCGAT	1 cut(s)	1412
BtgZI	GCGATG	1 cut(s)	1145
BtsCI	GGATG	3 cut(s)	13, 981, 1261
BtsIMutI	CAGTG	1 cut(s)	1236
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	3 cut(s)	147, 267, 1423
CaiI	CAGNNNCTG	2 cut(s)	517, 607
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	3 cut(s)	98, 698, 1394
ClaI	ATCGAT	1 cut(s)	1412
CseI	GACGC	2 cut(s)	48, 1030
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	8 cut(s)	152, 232, 493, 629, 761, 1138, 1370, 1422
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	3 cut(s)	327, 635, 1171
DpnI	GATC	8 cut(s)	12, 38, 387, 515, 921, 1325, 1411, 1415
DpnII	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
DrdI	GACNNNNNNGTC	1 cut(s)	1091
DseDI	GACNNNNNNGTC	1 cut(s)	1091
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	717, 1069
EarI	CTCTTC	2 cut(s)	717, 1069
Eco130I	CCWWGG	1 cut(s)	1338
Eco24I	GRGCYC	1 cut(s)	1307
Eco47I	GGWCC	1 cut(s)	1394
Eco57I	CTGAAG	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	567
EcoO109I	RGGNCCY	2 cut(s)	98, 698
EcoT14I	CCWWGG	1 cut(s)	1338
EcoT38I	GRGCYC	1 cut(s)	1307
ErhI	CCWWGG	1 cut(s)	1338
Esp3I	CGTCTC	2 cut(s)	402, 1013
FaeI	CATG	8 cut(s)	155, 235, 496, 632, 764, 1141, 1373, 1425
FatI	CATG	8 cut(s)	151, 231, 492, 628, 760, 1137, 1369, 1421
FauNDI	CATATG	1 cut(s)	1126
FbaI	TGATCA	3 cut(s)	10, 385, 919
FokI	GGATG	2 cut(s)	988, 1268
FriOI	GRGCYC	1 cut(s)	1307
FspBI	CTAG	5 cut(s)	102, 857, 896, 1091, 1100
GlaI	GCGC	1 cut(s)	611
GsuI	CTGGAG	3 cut(s)	614, 969, 1049
HaeIII	GGCC	5 cut(s)	34, 100, 121, 699, 1158
HapII	CCGG	1 cut(s)	1407
HgaI	GACGC	2 cut(s)	48, 1030
HhaI	GCGC	1 cut(s)	612
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	8 cut(s)	155, 235, 496, 632, 764, 1141, 1373, 1425
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HindIII	AAGCTT	2 cut(s)	173, 671
HinfI	GANTC	3 cut(s)	256, 639, 1167
HpaII	CCGG	1 cut(s)	1407
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	8 cut(s)	420, 636, 680, 722, 844, 1002, 1013, 1039
Hpy188III	TCNNGA	8 cut(s)	40, 326, 368, 448, 593, 601, 931, 1054
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	8 cut(s)	515, 854, 966, 974, 1044, 1148, 1197, 1270
HpyCH4III	ACNGT	2 cut(s)	1189, 1386
HpyF10VI	GCNNNNNNNGC	6 cut(s)	181, 442, 517, 526, 572, 1030
HpyF3I	CTNAG	3 cut(s)	327, 635, 1171
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	8 cut(s)	155, 235, 496, 632, 764, 1141, 1373, 1425
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	3 cut(s)	10, 385, 919
Kzo9I	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	2 cut(s)	1030, 1302
LweI	GCATC	2 cut(s)	407, 553
MaeI	CTAG	5 cut(s)	102, 857, 896, 1091, 1100
MaeIII	GTNAC	2 cut(s)	40, 310
MalI	GATC	8 cut(s)	12, 38, 387, 515, 921, 1325, 1411, 1415
MbiI	CCGCTC	1 cut(s)	269
MboI	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
MboII	GAAGA	9 cut(s)	704, 797, 835, 1042, 1056, 1321, 1358, 1408, 1438
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	2 cut(s)	872, 1307
MluCI	AATT	9 cut(s)	140, 161, 186, 431, 622, 681, 838, 1003, 1229
MmeI	TCCRAC	1 cut(s)	658
MseI	TTAA	2 cut(s)	621, 1220
MslI	CAYNNNNRTG	2 cut(s)	797, 1372
MspA1I	CMGCKG	1 cut(s)	73
MspI	CCGG	1 cut(s)	1407
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	743
MwoI	GCNNNNNNNGC	6 cut(s)	181, 442, 517, 526, 572, 1030
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
NlaIII	CATG	8 cut(s)	155, 235, 496, 632, 764, 1141, 1373, 1425
NlaIV	GGNNCC	4 cut(s)	99, 1032, 1304, 1396
NmeAIII	GCCGAG	1 cut(s)	1315
NmuCI	GTSAC	2 cut(s)	40, 310
NspI	RCATGY	2 cut(s)	496, 1425
PaeI	GCATGC	1 cut(s)	1425
PaeR7I	CTCGAG	1 cut(s)	567
PciI	ACATGT	1 cut(s)	492
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	256, 639, 1167
Ple19I	CGATCG	1 cut(s)	39
PscI	ACATGT	1 cut(s)	492
PshBI	ATTAAT	1 cut(s)	1220
PspN4I	GGNNCC	4 cut(s)	99, 1032, 1304, 1396
PspPI	GGNCC	3 cut(s)	98, 698, 1394
PspXI	VCTCGAGB	1 cut(s)	567
PstI	CTGCAG	2 cut(s)	617, 758
PstNI	CAGNNNCTG	2 cut(s)	517, 607
PsuI	RGATCY	1 cut(s)	513
PvuI	CGATCG	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
RseI	CAYNNNNRTG	2 cut(s)	797, 1372
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	621, 1220
Sau3AI	GATC	8 cut(s)	10, 36, 385, 513, 919, 1323, 1409, 1413
Sau96I	GGNCC	3 cut(s)	98, 698, 1394
SduI	GDGCHC	2 cut(s)	872, 1307
SfaNI	GCATC	2 cut(s)	407, 553
SfcI	CTRYAG	3 cut(s)	156, 613, 754
Sfr274I	CTCGAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	1394
SlaI	CTCGAG	1 cut(s)	567
SmiMI	CAYNNNNRTG	2 cut(s)	797, 1372
SmlI	CTYRAG	3 cut(s)	446, 567, 1399
SmoI	CTYRAG	3 cut(s)	446, 567, 1399
SphI	GCATGC	1 cut(s)	1425
Sse9I	AATT	9 cut(s)	140, 161, 186, 431, 622, 681, 838, 1003, 1229
SsiI	CCGC	2 cut(s)	65, 269
SspMI	CTAG	5 cut(s)	102, 857, 896, 1091, 1100
StyI	CCWWGG	1 cut(s)	1338
TaaI	ACNGT	2 cut(s)	1189, 1386
TaqI	TCGA	4 cut(s)	378, 568, 1152, 1412
TasI	AATT	9 cut(s)	140, 161, 186, 431, 622, 681, 838, 1003, 1229
TatI	WGTACW	1 cut(s)	544
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	3 cut(s)	256, 639, 1167
Tru1I	TTAA	2 cut(s)	621, 1220
Tru9I	TTAA	2 cut(s)	621, 1220
TscAI	CASTG	1 cut(s)	1243
TseFI	GTSAC	2 cut(s)	40, 310
Tsp45I	GTSAC	2 cut(s)	40, 310
TspDTI	ATGAA	4 cut(s)	382, 704, 741, 1386
TspRI	CASTG	1 cut(s)	1243
VpaK11BI	GGWCC	1 cut(s)	1394
VspI	ATTAAT	1 cut(s)	1220
XapI	RAATTY	3 cut(s)	681, 838, 1003
XceI	RCATGY	2 cut(s)	496, 1425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XhoI	CTCGAG	1 cut(s)	567
XspI	CTAG	5 cut(s)	102, 857, 896, 1091, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.