AT5G15740

fucose metabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002611
Physical Location & Seq
Reverse (-)
5134507 .. 5137707
3201 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G15740.1

Sequence Viewer

Length: 1527 bp
ATGTGTAAAATGGAGAAGTTTCTTTACCACAGGAAACTATGGGAGATGAATGTTAAGCTTTTAGGAGAGAGCAAAGTTGAGAAACTCAAGAACTCTTTTGTTTCGAGGCCTCGTATGAGCTTATGGATGATTCGTGCTGTTACTGTATTGTTGCTTTGGAGCTGTTTTGTTCATTTGATGGCTTTGGGAGAGATGTGGGGACCAAGATTGTTTAAAGGTTGGCCTTCTTGTTTCAATCACCATCAACTGTCCACTGCCGCAGAGATGACGTCTCTTCCTACCAAAATTGCTCTTCCACCTAAAAGGGTATATGTGAACAATGGTTATCTTATGGTTTCCTGCAATGGAGGACTCAATCAAATGCGAGCAGCTATATGTGATATGGTAACCGTTGCAAGATACATGAATGTTACACTTATTGTGCCGGAGCTTGACAAGACCTCTTTTTGGAACGATCCAAGTGAGTTTAAAGACATATTCGATGTGGATCACTTCATAAGTTCGTTAAGAGATGAAGTTCGGATACTCAAAGAGTTACCTCCAAGGCTTAAGAAAAGGGTTGAGCTTGGAGTGTACCACGAAATGCCTCCTATTAGTTGGTCAAACATGTCTTACTACCAAAATCAGATTCTTCCACTGGTGAAAAAACATAAGGTTTTACATCTGAACAGAACGGATACCCGACTTGCTAATAATGGACTGCCTGTGGAGGTTCAGAAGCTGAGGTGCCGAGTAAATTTCAATGGGCTTAAGTTTACTCCTCAGATTGAGGAATTAGGTAGACGAGTAGTCAAGATTCTGAGAGAGAAAGGTCCCTTTCTTGTCCTGCATCTCAGATATGAGATGGATATGTTAGCATTTTCTGGTTGTTCACATGGTTGCAACCCCGAGGAAGAAGAAGAACTAACAAGAATGAGATATGCTTATCCATGGTGGAAAGAGAAAGTCATAAACTCTGAGCTGAAGAGGAAAGATGGCCTTTGCCCTTTAACTCCTGAGGAAACCGCTCTCACTCTGACCGCGTTGGGTATTGACCGAAATGTTCAAATTTACATAGCTGCTGGAGAAATCTATGGTGGTCAAAGGCGGATGAAGGCTTTAACAGACGCTTTTCCAAATGTGGTCCGGAAAGAAACCCTACTCGAATCCTCTGATCTGGATTTTTGCCGGAACCATTCATCTCAAATGGCTGCACTTGATTACCTAGTGGCACTTGAGAGCGACATATTTGTTCCAACCAATGATGGGAACATGGCAAGAGTTGTTGAAGGTCATCGCAGATTCTTGGGGTTCAAGAAGACAATCCAGCTGAATAGGAGGTTCCTAGTTAAGCTGATAGATGAGTATACTGAAGGATTGTTGAGTTGGGATGTATTTTCATCCACGGTGAAGGCATTTCACTCTACTCGAATGGGAAGCCCTAAGAGACGGTTAGTGATTCCCAATAGACCCAAGGAAGAAGACTACTTCTACGCCAACCCACAAGAATGTCTGCAGCTGTTAGATGAACCATTGAGAGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

508

Amino Acids

59.04

Weight (kDa)

9.17

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 109 - 428 2.1e-107 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 726
AccBSI CCGCTC 1 cut(s) 1007
AccI GTMKAC 2 cut(s) 781, 1346
AccII CGCG 1 cut(s) 1022
AccIII TCCGGA 1 cut(s) 1125
AciI CCGC 4 cut(s) 258, 1005, 1020, 1087
AclWI GGATC 2 cut(s) 449, 495
AcsI RAATTY 2 cut(s) 736, 1047
AcuI CTGAAG 2 cut(s) 983, 1371
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 447, 1245
AflII CTTAAG 2 cut(s) 548, 749
AflIII ACRYGT 1 cut(s) 606
AgsI TTSAA 5 cut(s) 235, 742, 1046, 1268, 1294
AhdI GACNNNNNGTC 1 cut(s) 788
AjuI GAANNNNNNNTTGG 2 cut(s) 612, 644
Alw26I GTCTC 2 cut(s) 276, 1420
AlwI GGATC 2 cut(s) 449, 495
AlwNI CAGNNNCTG 1 cut(s) 721
Ama87I CYCGRG 1 cut(s) 887
Aor13HI TCCGGA 1 cut(s) 1125
AoxI GGCC 3 cut(s) 107, 221, 976
ApeKI GCWGC 4 cut(s) 368, 1058, 1190, 1495
ApoI RAATTY 2 cut(s) 736, 1047
AspS9I GGNCC 3 cut(s) 200, 812, 1123
AsuHPI GGTGA 3 cut(s) 230, 652, 1399
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 3 cut(s) 200, 812, 1123
AxyI CCTNAGG 1 cut(s) 996
BanI GGYRCC 1 cut(s) 726
BarI GAAGNNNNNNTAC 4 cut(s) 8, 40, 507, 539
BbsI GAAGAC 2 cut(s) 1304, 1467
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 4 cut(s) 380, 1045, 1177, 1507
BccI CCATC 5 cut(s) 172, 249, 838, 968, 1238
BciVI GTATCC 2 cut(s) 516, 670
BcoDI GTCTC 2 cut(s) 276, 1420
BfaI CTAG 2 cut(s) 1205, 1325
BfmI CTRYAG 1 cut(s) 1493
BfrI CTTAAG 2 cut(s) 548, 749
BfuI GTATCC 2 cut(s) 516, 670
BisI GCNGC 5 cut(s) 258, 369, 1059, 1191, 1496
BlsI GCNGC 5 cut(s) 259, 370, 1060, 1192, 1497
Bme18I GGWCC 3 cut(s) 200, 812, 1123
BmeRI GACNNNNNGTC 1 cut(s) 788
BmeT110I CYCGRG 1 cut(s) 887
BmgT120I GGNCC 3 cut(s) 200, 812, 1123
BmiI GGNNCC 5 cut(s) 201, 728, 814, 1172, 1322
BmsI GCATC 1 cut(s) 838
BpiI GAAGAC 2 cut(s) 1304, 1467
BpmI CTGGAG 1 cut(s) 1083
Bpu10I CCTNAGC 1 cut(s) 722
BpuEI CTTGAG 2 cut(s) 71, 1235
BsaBI GATNNNNATC 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 5 cut(s) 542, 888, 929, 1383, 1452
BsaWI WCCGGW 1 cut(s) 1125
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 1245
Bse1I ACTGG 1 cut(s) 642
Bse21I CCTNAGG 1 cut(s) 996
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 1125
BseDI CCNNGG 5 cut(s) 542, 888, 929, 1383, 1452
BseGI GGATG 4 cut(s) 132, 1095, 1375, 1379
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 447, 1245
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 6 cut(s) 713, 776, 791, 847, 948, 987
BseNI ACTGG 1 cut(s) 642
BseRI GAGGAG 1 cut(s) 750
BseXI GCAGC 4 cut(s) 380, 1045, 1177, 1507
BsgI GTGCAG 1 cut(s) 1176
Bsh1236I CGCG 1 cut(s) 1022
BshFI GGCC 3 cut(s) 109, 223, 978
BshNI GGYRCC 1 cut(s) 726
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 3 cut(s) 425, 1126, 1168
BslFI GGGAC 2 cut(s) 213, 798
BslI CCNNNNNNNGG 2 cut(s) 447, 1245
BsmAI GTCTC 2 cut(s) 276, 1420
BsmBI CGTCTC 2 cut(s) 276, 1420
BsmFI GGGAC 2 cut(s) 213, 798
BsnI GGCC 3 cut(s) 109, 223, 978
BsoBI CYCGRG 1 cut(s) 887
Bsp13I TCCGGA 1 cut(s) 1125
Bsp143I GATC 3 cut(s) 454, 487, 1153
Bsp19I CCATGG 1 cut(s) 929
BspACI CCGC 4 cut(s) 258, 1005, 1020, 1087
BspANI GGCC 3 cut(s) 109, 223, 978
BspCNI CTCAG 6 cut(s) 714, 775, 792, 846, 949, 988
BspEI TCCGGA 1 cut(s) 1125
BspFNI CGCG 1 cut(s) 1022
BspLI GGNNCC 5 cut(s) 201, 728, 814, 1172, 1322
BspMAI CTGCAG 1 cut(s) 1497
BspPI GGATC 2 cut(s) 449, 495
BspQI GCTCTTC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 726
BspTI CTTAAG 2 cut(s) 548, 749
BsrBI CCGCTC 1 cut(s) 1007
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 1 cut(s) 642
BssECI CCNNGG 5 cut(s) 542, 888, 929, 1383, 1452
BssMI GATC 3 cut(s) 454, 487, 1153
BssNAI GTATAC 1 cut(s) 1347
BssNI GRCGYC 1 cut(s) 269
BssT1I CCWWGG 3 cut(s) 542, 929, 1452
Bst1107I GTATAC 1 cut(s) 1347
Bst4CI ACNGT 5 cut(s) 145, 249, 391, 1387, 1431
Bst6I CTCTTC 3 cut(s) 279, 297, 959
BstACI GRCGYC 1 cut(s) 269
BstAFI CTTAAG 2 cut(s) 548, 749
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 7 cut(s) 722, 762, 800, 833, 957, 996, 1422
BstDSI CCRYGG 2 cut(s) 929, 1383
BstEII GGTNACC 1 cut(s) 385
BstF5I GGATG 4 cut(s) 132, 1095, 1375, 1379
BstFNI CGCG 1 cut(s) 1022
BstKTI GATC 3 cut(s) 457, 490, 1156
BstMAI GTCTC 2 cut(s) 276, 1420
BstMBI GATC 3 cut(s) 454, 487, 1153
BstNSI RCATGY 1 cut(s) 610
BstPI GGTNACC 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 1493
BstUI CGCG 1 cut(s) 1022
BstV1I GCAGC 4 cut(s) 380, 1045, 1177, 1507
BstV2I GAAGAC 2 cut(s) 1304, 1467
BstZ17I GTATAC 1 cut(s) 1347
Bsu36I CCTNAGG 1 cut(s) 996
BsuI GTATCC 2 cut(s) 516, 670
BsuRI GGCC 3 cut(s) 109, 223, 978
BtgI CCRYGG 2 cut(s) 929, 1383
BtgZI GCGATG 1 cut(s) 1259
BtsCI GGATG 4 cut(s) 132, 1095, 1375, 1379
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 635
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 200, 812, 1123
CseI GACGC 1 cut(s) 1115
Csp6I GTAC 1 cut(s) 574
CviAII CATG 5 cut(s) 403, 607, 875, 930, 1252
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 7 cut(s) 722, 762, 800, 833, 957, 996, 1422
DpnI GATC 3 cut(s) 456, 489, 1155
DpnII GATC 3 cut(s) 454, 487, 1153
DraI TTTAAA 2 cut(s) 214, 469
DriI GACNNNNNGTC 1 cut(s) 788
Eam1104I CTCTTC 3 cut(s) 279, 297, 959
Eam1105I GACNNNNNGTC 1 cut(s) 788
EarI CTCTTC 3 cut(s) 279, 297, 959
EciI GGCGGA 1 cut(s) 1102
Eco130I CCWWGG 3 cut(s) 542, 929, 1452
Eco147I AGGCCT 1 cut(s) 109
Eco47I GGWCC 3 cut(s) 200, 812, 1123
Eco57I CTGAAG 2 cut(s) 983, 1371
Eco81I CCTNAGG 1 cut(s) 996
Eco88I CYCGRG 1 cut(s) 887
Eco91I GGTNACC 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 812
EcoO65I GGTNACC 1 cut(s) 385
EcoT14I CCWWGG 3 cut(s) 542, 929, 1452
ErhI CCWWGG 3 cut(s) 542, 929, 1452
Esp3I CGTCTC 2 cut(s) 276, 1420
FaeI CATG 5 cut(s) 406, 610, 878, 933, 1255
FalI AAGNNNNNCTT 2 cut(s) 963, 995
FaqI GGGAC 2 cut(s) 213, 798
FatI CATG 5 cut(s) 402, 606, 874, 929, 1251
FblI GTMKAC 2 cut(s) 781, 1346
Fnu4HI GCNGC 5 cut(s) 258, 369, 1059, 1191, 1496
FokI GGATG 4 cut(s) 139, 1102, 1366, 1382
Fsp4HI GCNGC 5 cut(s) 258, 369, 1059, 1191, 1496
FspBI CTAG 2 cut(s) 1205, 1325
GluI GCNGC 5 cut(s) 258, 369, 1059, 1191, 1496
GsuI CTGGAG 1 cut(s) 1083
HaeIII GGCC 3 cut(s) 109, 223, 978
HapII CCGG 3 cut(s) 425, 1126, 1168
HgaI GACGC 1 cut(s) 1115
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 5 cut(s) 406, 610, 878, 933, 1255
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 8 cut(s) 130, 351, 628, 796, 1145, 1281, 1438, 1518
HpaII CCGG 3 cut(s) 425, 1126, 1168
HphI GGTGA 3 cut(s) 230, 652, 1399
Hpy166II GTNNAC 7 cut(s) 252, 316, 574, 756, 782, 872, 1347
Hpy188III TCNNGA 6 cut(s) 88, 793, 995, 1126, 1157, 1294
Hpy8I GTNNAC 7 cut(s) 252, 316, 574, 756, 782, 872, 1347
HpyAV CCTTC 5 cut(s) 234, 1087, 1262, 1346, 1384
HpyCH4III ACNGT 5 cut(s) 145, 249, 391, 1387, 1431
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 6 cut(s) 342, 395, 829, 882, 1193, 1495
HpyF3I CTNAG 7 cut(s) 722, 762, 800, 833, 957, 996, 1422
HpySE526I ACGT 1 cut(s) 269
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 5 cut(s) 406, 610, 878, 933, 1255
Kpn2I TCCGGA 1 cut(s) 1125
Kzo9I GATC 3 cut(s) 454, 487, 1153
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 159, 427
Lsp1109I GCAGC 4 cut(s) 380, 1045, 1177, 1507
LweI GCATC 1 cut(s) 838
MaeI CTAG 2 cut(s) 1205, 1325
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 4 cut(s) 139, 385, 409, 534
MalI GATC 3 cut(s) 456, 489, 1155
MbiI CCGCTC 1 cut(s) 1007
MboI GATC 3 cut(s) 454, 487, 1153
MluCI AATT 4 cut(s) 285, 736, 773, 1047
MlyI GAGTC 2 cut(s) 345, 1527
MmeI TCCRAC 1 cut(s) 1259
MroI TCCGGA 1 cut(s) 1125
MseI TTAA 9 cut(s) 54, 213, 468, 506, 549, 750, 989, 1100, 1329
MslI CAYNNNNRTG 1 cut(s) 1486
MspA1I CMGCKG 2 cut(s) 1309, 1498
MspCI CTTAAG 2 cut(s) 548, 749
MspI CCGG 3 cut(s) 425, 1126, 1168
MvnI CGCG 1 cut(s) 1022
NcoI CCATGG 1 cut(s) 929
NdeII GATC 3 cut(s) 454, 487, 1153
NlaIII CATG 5 cut(s) 406, 610, 878, 933, 1255
NlaIV GGNNCC 5 cut(s) 201, 728, 814, 1172, 1322
NmeAIII GCCGAG 1 cut(s) 755
NspI RCATGY 1 cut(s) 610
PceI AGGCCT 1 cut(s) 109
PciI ACATGT 1 cut(s) 606
PciSI GCTCTTC 1 cut(s) 297
PfeI GAWTC 6 cut(s) 130, 628, 796, 1145, 1281, 1438
PkrI GCNGC 5 cut(s) 259, 370, 1060, 1192, 1497
PleI GAGTC 2 cut(s) 345, 1526
PpsI GAGTC 2 cut(s) 345, 1526
PpuMI RGGWCCY 1 cut(s) 812
PscI ACATGT 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 812
PspEI GGTNACC 1 cut(s) 385
PspN4I GGNNCC 5 cut(s) 201, 728, 814, 1172, 1322
PspPI GGNCC 3 cut(s) 200, 812, 1123
PspPPI RGGWCCY 1 cut(s) 812
PstI CTGCAG 1 cut(s) 1497
PstNI CAGNNNCTG 1 cut(s) 721
PvuII CAGCTG 2 cut(s) 1309, 1498
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 1486
SapI GCTCTTC 1 cut(s) 297
SaqAI TTAA 9 cut(s) 54, 213, 468, 506, 549, 750, 989, 1100, 1329
SatI GCNGC 5 cut(s) 258, 369, 1059, 1191, 1496
Sau3AI GATC 3 cut(s) 454, 487, 1153
Sau96I GGNCC 3 cut(s) 200, 812, 1123
SchI GAGTC 2 cut(s) 345, 1527
SfaNI GCATC 1 cut(s) 838
SfcI CTRYAG 1 cut(s) 1493
SinI GGWCC 3 cut(s) 200, 812, 1123
SmiMI CAYNNNNRTG 1 cut(s) 1486
SmlI CTYRAG 4 cut(s) 86, 548, 749, 1214
SmoI CTYRAG 4 cut(s) 86, 548, 749, 1214
Sse9I AATT 4 cut(s) 285, 736, 773, 1047
SseBI AGGCCT 1 cut(s) 109
SsiI CCGC 4 cut(s) 258, 1005, 1020, 1087
SspMI CTAG 2 cut(s) 1205, 1325
StuI AGGCCT 1 cut(s) 109
StyI CCWWGG 3 cut(s) 542, 929, 1452
TaaI ACNGT 5 cut(s) 145, 249, 391, 1387, 1431
TaiI ACGT 1 cut(s) 272
TaqI TCGA 4 cut(s) 104, 480, 1143, 1408
TaqII GACCGA 1 cut(s) 1050
TasI AATT 4 cut(s) 285, 736, 773, 1047
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 6 cut(s) 130, 628, 796, 1145, 1281, 1438
Tru1I TTAA 9 cut(s) 54, 213, 468, 506, 549, 750, 989, 1100, 1329
Tru9I TTAA 9 cut(s) 54, 213, 468, 506, 549, 750, 989, 1100, 1329
TscAI CASTG 2 cut(s) 259, 642
TseI GCWGC 4 cut(s) 368, 1058, 1190, 1495
TspDTI ATGAA 9 cut(s) 62, 161, 419, 484, 528, 1106, 1167, 1368, 1521
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 2 cut(s) 259, 642
Vha464I CTTAAG 2 cut(s) 548, 749
VpaK11BI GGWCC 3 cut(s) 200, 812, 1123
XapI RAATTY 2 cut(s) 736, 1047
XceI RCATGY 1 cut(s) 610
XmiI GTMKAC 2 cut(s) 781, 1346
XspI CTAG 2 cut(s) 1205, 1325
ZraI GACGTC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.