Rh7CG062600

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002611
Physical Location & Seq
Forward (+)
4541526 .. 4545511
3986 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG062600.1

Sequence Viewer

Length: 1551 bp
ATGTGCAAGGTGGAGAAGGAGAGAAGAGGAGTGATGGGGATAAAGGGGCTGGGAGGTGGTGGAGATAAGCTGAAGAACTCGCTGCTGCAAACGACGTCGTCGAGGTCGAGAATGAAGCTGTGGATGATAAGGGCGACGACGTCGGTTTTGCTGTGGACGTGCGTCGTGCAATTGACGGCCTTGGGGGATATGTGGGGCCCTAGGGTTTTGAAGGGATGGCCGTCCTGCTTCTCTCAGGAGAGTGCCGTGGCCTCGTCGGTTTTGCAGGACCGGATGACTTCCGTTCCGGCCAGAGTTCTTCCGCCAAAGAGGGTTTACAAAAACAATGGCTACCTCATGGTTTCGTGCAATGGGGGACTCAATCAAATGAGAGCAGCGATATGTGACATGGTTGCTATTGCAAGGTATTTGAATGTCACCCTCGTAGTTCCCGAACTTGATAAAACGTCCTTTTGGGCTGATCCCAGTGAGTTTCAAGACATTTTTGATGTGGATCATTTCATCACATCCTTGAGAGATGAGGTTCGGATATTGAAAGAGTTGCCTCCCAGGGTTAAGAGAAGAGTGGAACTAGGAATGGTTTATACCATGCCACCAGTTAGTTGGTCTGACATATCTTATTATCATAATCAGATTCTTCCTCTGATACAAAAATACAAAGTTGTACATTTGAATAAAACTGATGCTAGACTGGCCAATAATGGACAACCCTTGGAGATTCAGAAACTTCGATGCCGAGTAAATTTTAGTGCTCTGCGATTCACTTCTCAAATAGAGGAATTGGGTAGAAGGGTCATAAATCTTCTCAGGGCAAAAGGTCCTTTCCTAGTTCTTCATCTTAGATATGAAATGGACATGTTGGCATTTTCTGGCTGTACCCAAGGTTGCAACGCTGAGGAGGTGGAAGAGTTGACAAGGATGAGATATGCTTATCCCTGGTGGAAGGAGAAAATAATAAACTCTGACCTGAAAAGGAAAGATGGTTTGTGTCCTTTGACACCAGAAGAAACTGCTCTCACACTGAGTGCACTTGAAATTGATCCCAACATCCAGATCTATATTGCCGCTGGTGAAATCTACGGTGGTGAGAGGAGAATGGCAAGTCTTGCAAAGGCTTTTCCAAAATTGGTCAGAAAGGAGACACTGTTAGAACCGTCAGACCTCAGGTTCTTTCAAAACCACTCCTCCCAAATGGCGGCATTGGATTATCTCGTCTCGTTGGAGAGTGATATCTTTGTTCCCACATATGATGGAAACATGGCTAAAGTTGTTGAAGGCCATCGCAGATTTCTCGGGTTCAAGAAGACAATTCTGCTGGACAGAAGGCTTCTTGTTGATTTGATAGACCAGTACAATGGTGGAGAATTGAATTGGGATGAATTCTCTTCTGCAGTGAAGGAAGCTCATGCAGAACGCATGGGTAACCCAACTAAAAGGTTGATGATCCAAGACAGACCTAAAGAGGAGGACTATTTCTATGCCAACCCAGAAGAGTGTTTGCAATTGTCAGATGATGAGCAATTATCAGATGGGCTATTGAGTAGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

516

Amino Acids

58.88

Weight (kDa)

8.38

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 111 - 430 3.1e-106 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 98, 143
AciI CCGC 3 cut(s) 302, 1065, 1196
AclWI GGATC 4 cut(s) 455, 501, 1034, 1438
AcoI YGGCCR 3 cut(s) 218, 288, 693
AcsI RAATTY 2 cut(s) 742, 1379
AcuI CTGAAG 1 cut(s) 92
AcyI GRCGYC 2 cut(s) 95, 140
AdeI CACNNNGTG 1 cut(s) 1025
AfaI GTAC 3 cut(s) 666, 877, 1352
AfiI CCNNNNNNNGG 1 cut(s) 1195
AflIII ACRYGT 1 cut(s) 855
AjiI CACGTC 1 cut(s) 159
AjnI CCWGG 2 cut(s) 548, 935
AluBI AGCT 3 cut(s) 70, 118, 1403
AluI AGCT 3 cut(s) 70, 118, 1403
Alw21I GWGCWC 2 cut(s) 754, 1030
Alw26I GTCTC 2 cut(s) 1133, 1219
Alw44I GTGCAC 1 cut(s) 1026
AlwI GGATC 4 cut(s) 455, 501, 1034, 1438
Ama87I CYCGRG 1 cut(s) 1292
AoxI GGCC 7 cut(s) 177, 196, 218, 249, 288, 693, 1276
ApaI GGGCCC 1 cut(s) 200
ApaLI GTGCAC 1 cut(s) 1026
ApeKI GCWGC 3 cut(s) 82, 85, 374
ApoI RAATTY 2 cut(s) 742, 1379
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspA2I CCTAGG 1 cut(s) 200
AspS9I GGNCC 4 cut(s) 196, 197, 268, 818
AsuHPI GGTGA 3 cut(s) 409, 1082, 1097
AvaI CYCGRG 1 cut(s) 1292
AvaII GGWCC 2 cut(s) 268, 818
AvrII CCTAGG 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 1163
BaeGI GKGCMC 2 cut(s) 200, 1030
BalI TGGCCA 1 cut(s) 695
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 1310
Bbv12I GWGCWC 2 cut(s) 754, 1030
BbvCI CCTCAGC 1 cut(s) 894
BbvI GCAGC 3 cut(s) 69, 72, 386
BccI CCATC 6 cut(s) 28, 210, 974, 1244, 1287, 1523
BceAI ACGGC 3 cut(s) 192, 205, 230
BcgI CGANNNNNNTGC 2 cut(s) 1273, 1307
BciT130I CCWGG 2 cut(s) 550, 937
BcoDI GTCTC 2 cut(s) 1133, 1219
BfaI CTAG 4 cut(s) 201, 572, 687, 827
BfmI CTRYAG 1 cut(s) 1389
BglII AGATCT 1 cut(s) 1053
BisI GCNGC 5 cut(s) 83, 86, 375, 1065, 1197
BlnI CCTAGG 1 cut(s) 200
BlsI GCNGC 5 cut(s) 84, 87, 376, 1066, 1198
Bme1390I CCNGG 2 cut(s) 550, 937
Bme18I GGWCC 2 cut(s) 268, 818
BmeT110I CYCGRG 1 cut(s) 1292
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 4 cut(s) 196, 197, 268, 818
BmiI GGNNCC 2 cut(s) 197, 198
BmrFI CCNGG 2 cut(s) 550, 937
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 2 cut(s) 673, 722
BmuI ACTGGG 1 cut(s) 459
BoxI GACNNNNGTC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 1310
Bpu10I CCTNAGC 1 cut(s) 894
BpuEI CTTGAG 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 2 cut(s) 95, 140
BsaJI CCNNGG 8 cut(s) 180, 200, 246, 548, 549, 711, 880, 935
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 1130, 1160, 1169, 1199
Bsc4I CCNNNNNNNGG 1 cut(s) 1195
Bse1I ACTGG 4 cut(s) 465, 596, 696, 1348
Bse21I CCTNAGG 1 cut(s) 1163
Bse3DI GCAATG 1 cut(s) 355
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 2 cut(s) 550, 937
BseDI CCNNGG 8 cut(s) 180, 200, 246, 548, 549, 711, 880, 935
BseGI GGATG 7 cut(s) 129, 221, 279, 506, 924, 1047, 1381
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 1 cut(s) 1195
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 5 cut(s) 248, 820, 885, 1013, 1177
BseNI ACTGG 4 cut(s) 465, 596, 696, 1348
BseRI GAGGAG 5 cut(s) 42, 911, 1105, 1174, 1478
BseSI GKGCMC 2 cut(s) 200, 1030
BseXI GCAGC 3 cut(s) 69, 72, 386
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 7 cut(s) 179, 198, 220, 251, 290, 695, 1278
BsiHKAI GWGCWC 2 cut(s) 754, 1030
BsiHKCI CYCGRG 1 cut(s) 1292
BsiSI CCGG 2 cut(s) 271, 287
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 1195
BsmAI GTCTC 2 cut(s) 1133, 1219
BsmBI CGTCTC 1 cut(s) 1219
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 7 cut(s) 179, 198, 220, 251, 290, 695, 1278
BsoBI CYCGRG 1 cut(s) 1292
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 3 cut(s) 200, 754, 1030
Bsp1407I TGTACA 1 cut(s) 664
Bsp143I GATC 5 cut(s) 460, 493, 1039, 1053, 1443
BspACI CCGC 3 cut(s) 302, 1065, 1196
BspANI GGCC 7 cut(s) 179, 198, 220, 251, 290, 695, 1278
BspCNI CTCAG 5 cut(s) 247, 819, 886, 1014, 1176
BspLI GGNNCC 2 cut(s) 197, 198
BspMAI CTGCAG 1 cut(s) 1393
BspPI GGATC 4 cut(s) 455, 501, 1034, 1438
BsrDI GCAATG 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 664
BsrI ACTGG 4 cut(s) 465, 596, 696, 1348
BssECI CCNNGG 8 cut(s) 180, 200, 246, 548, 549, 711, 880, 935
BssMI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
BssNI GRCGYC 2 cut(s) 95, 140
BssT1I CCWWGG 4 cut(s) 180, 200, 711, 880
Bst2UI CCWGG 2 cut(s) 550, 937
Bst4CI ACNGT 3 cut(s) 1082, 1146, 1155
Bst6I CTCTTC 5 cut(s) 19, 556, 900, 1390, 1485
BstACI GRCGYC 2 cut(s) 95, 140
BstAPI GCANNNNNTGC 1 cut(s) 1106
BstAUI TGTACA 1 cut(s) 664
BstDEI CTNAG 6 cut(s) 234, 806, 839, 894, 1022, 1163
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 1421
BstF5I GGATG 7 cut(s) 129, 221, 279, 506, 924, 1047, 1381
BstKTI GATC 5 cut(s) 463, 496, 1042, 1056, 1446
BstMAI GTCTC 2 cut(s) 1133, 1219
BstMBI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
BstMWI GCNNNNNNNGC 2 cut(s) 692, 1106
BstNI CCWGG 2 cut(s) 550, 937
BstNSI RCATGY 1 cut(s) 859
BstPAI GACNNNNGTC 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 1421
BstSCI CCNGG 2 cut(s) 548, 935
BstSFI CTRYAG 1 cut(s) 1389
BstSLI GKGCMC 2 cut(s) 200, 1030
BstV1I GCAGC 3 cut(s) 69, 72, 386
BstV2I GAAGAC 1 cut(s) 1310
BstX2I RGATCY 1 cut(s) 1053
BstXI CCANNNNNNTGG 2 cut(s) 603, 1355
BstYI RGATCY 1 cut(s) 1053
Bsu36I CCTNAGG 1 cut(s) 1163
BsuRI GGCC 7 cut(s) 179, 198, 220, 251, 290, 695, 1278
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 1265
BtrI CACGTC 1 cut(s) 159
BtsCI GGATG 7 cut(s) 129, 221, 279, 506, 924, 1047, 1381
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 4 cut(s) 472, 1019, 1142, 1398
Cfr13I GGNCC 4 cut(s) 196, 197, 268, 818
CseI GACGC 1 cut(s) 151
Csp6I GTAC 3 cut(s) 665, 876, 1351
CviAII CATG 7 cut(s) 337, 388, 589, 856, 1258, 1406, 1417
CviQI GTAC 3 cut(s) 665, 876, 1351
DdeI CTNAG 6 cut(s) 234, 806, 839, 894, 1022, 1163
DpnI GATC 5 cut(s) 462, 495, 1041, 1055, 1445
DpnII GATC 5 cut(s) 460, 493, 1039, 1053, 1443
DraIII CACNNNGTG 1 cut(s) 1025
EaeI YGGCCR 3 cut(s) 218, 288, 693
Eam1104I CTCTTC 5 cut(s) 19, 556, 900, 1390, 1485
EarI CTCTTC 5 cut(s) 19, 556, 900, 1390, 1485
EciI GGCGGA 1 cut(s) 291
Eco130I CCWWGG 4 cut(s) 180, 200, 711, 880
Eco24I GRGCYC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 2 cut(s) 268, 818
Eco57I CTGAAG 1 cut(s) 92
Eco81I CCTNAGG 1 cut(s) 1163
Eco88I CYCGRG 1 cut(s) 1292
Eco91I GGTNACC 1 cut(s) 1421
EcoO109I RGGNCCY 3 cut(s) 196, 197, 818
EcoO65I GGTNACC 1 cut(s) 1421
EcoRI GAATTC 1 cut(s) 1379
EcoRII CCWGG 2 cut(s) 548, 935
EcoRV GATATC 1 cut(s) 1231
EcoT14I CCWWGG 4 cut(s) 180, 200, 711, 880
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 4 cut(s) 180, 200, 711, 880
Esp3I CGTCTC 1 cut(s) 1219
FaeI CATG 7 cut(s) 340, 391, 592, 859, 1261, 1409, 1420
FaqI GGGAC 1 cut(s) 369
FatI CATG 7 cut(s) 336, 387, 588, 855, 1257, 1405, 1416
FauNDI CATATG 1 cut(s) 1246
Fnu4HI GCNGC 5 cut(s) 83, 86, 375, 1065, 1197
FokI GGATG 7 cut(s) 136, 228, 286, 493, 931, 1034, 1388
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 5 cut(s) 83, 86, 375, 1065, 1197
FspBI CTAG 4 cut(s) 201, 572, 687, 827
GluI GCNGC 5 cut(s) 83, 86, 375, 1065, 1197
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 7 cut(s) 179, 198, 220, 251, 290, 695, 1278
HapII CCGG 2 cut(s) 271, 287
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 2 cut(s) 95, 140
Hin1II CATG 7 cut(s) 340, 391, 592, 859, 1261, 1409, 1420
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 4 cut(s) 357, 634, 718, 759
HpaII CCGG 2 cut(s) 271, 287
HphI GGTGA 3 cut(s) 409, 1082, 1097
Hpy166II GTNNAC 4 cut(s) 156, 316, 912, 1028
Hpy188III TCNNGA 6 cut(s) 108, 236, 431, 476, 1051, 1300
Hpy8I GTNNAC 4 cut(s) 156, 316, 912, 1028
Hpy99I CGWCG 8 cut(s) 97, 100, 103, 139, 142, 145, 167, 259
HpyAV CCTTC 7 cut(s) 10, 205, 783, 937, 1268, 1317, 1390
HpyCH4III ACNGT 3 cut(s) 1082, 1146, 1155
HpyCH4IV ACGT 4 cut(s) 95, 140, 158, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 1106
HpyF3I CTNAG 6 cut(s) 234, 806, 839, 894, 1022, 1163
HpySE526I ACGT 4 cut(s) 95, 140, 158, 446
Hsp92I GRCGYC 2 cut(s) 95, 140
Hsp92II CATG 7 cut(s) 340, 391, 592, 859, 1261, 1409, 1420
Kzo9I GATC 5 cut(s) 460, 493, 1039, 1053, 1443
Lsp1109I GCAGC 3 cut(s) 69, 72, 386
LweI GCATC 2 cut(s) 673, 722
MaeI CTAG 4 cut(s) 201, 572, 687, 827
MaeII ACGT 4 cut(s) 95, 140, 158, 446
MaeIII GTNAC 3 cut(s) 383, 415, 1421
MalI GATC 5 cut(s) 462, 495, 1041, 1055, 1445
MboI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
MfeI CAATTG 2 cut(s) 170, 1502
MflI RGATCY 1 cut(s) 1053
MhlI GDGCHC 3 cut(s) 200, 754, 1030
MlsI TGGCCA 1 cut(s) 695
MluNI TGGCCA 1 cut(s) 695
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 1200
Mox20I TGGCCA 1 cut(s) 695
MscI TGGCCA 1 cut(s) 695
MseI TTAA 1 cut(s) 555
Msp20I TGGCCA 1 cut(s) 695
MspA1I CMGCKG 1 cut(s) 1067
MspI CCGG 2 cut(s) 271, 287
MspR9I CCNGG 2 cut(s) 550, 937
MunI CAATTG 2 cut(s) 170, 1502
MvaI CCWGG 2 cut(s) 550, 937
MwoI GCNNNNNNNGC 2 cut(s) 692, 1106
NdeI CATATG 1 cut(s) 1246
NdeII GATC 5 cut(s) 460, 493, 1039, 1053, 1443
NlaIII CATG 7 cut(s) 340, 391, 592, 859, 1261, 1409, 1420
NlaIV GGNNCC 2 cut(s) 197, 198
NmeAIII GCCGAG 1 cut(s) 761
NmuCI GTSAC 2 cut(s) 383, 415
NspI RCATGY 1 cut(s) 859
PasI CCCWGGG 1 cut(s) 549
PciI ACATGT 1 cut(s) 855
PcsI WCGNNNNNNNCGW 3 cut(s) 98, 104, 429
PfeI GAWTC 3 cut(s) 634, 718, 759
PflFI GACNNNGTC 2 cut(s) 97, 139
PkrI GCNGC 5 cut(s) 84, 87, 376, 1066, 1198
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 818
PscI ACATGT 1 cut(s) 855
PshAI GACNNNNGTC 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 818
Psp6I CCWGG 2 cut(s) 548, 935
PspEI GGTNACC 1 cut(s) 1421
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 2 cut(s) 548, 935
PspN4I GGNNCC 2 cut(s) 197, 198
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 4 cut(s) 196, 197, 268, 818
PspPPI RGGWCCY 1 cut(s) 818
PstI CTGCAG 1 cut(s) 1393
PsuI RGATCY 1 cut(s) 1053
PsyI GACNNNGTC 2 cut(s) 97, 139
RsaI GTAC 3 cut(s) 666, 877, 1352
RsaNI GTAC 3 cut(s) 665, 876, 1351
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 5 cut(s) 83, 86, 375, 1065, 1197
Sau3AI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
Sau96I GGNCC 4 cut(s) 196, 197, 268, 818
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 2 cut(s) 550, 937
SduI GDGCHC 3 cut(s) 200, 754, 1030
SfaNI GCATC 2 cut(s) 673, 722
SfcI CTRYAG 1 cut(s) 1389
SinI GGWCC 2 cut(s) 268, 818
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SsiI CCGC 3 cut(s) 302, 1065, 1196
SspMI CTAG 4 cut(s) 201, 572, 687, 827
StyD4I CCNGG 2 cut(s) 548, 935
StyI CCWWGG 4 cut(s) 180, 200, 711, 880
TaaI ACNGT 3 cut(s) 1082, 1146, 1155
TaiI ACGT 4 cut(s) 98, 143, 161, 449
TaqI TCGA 3 cut(s) 101, 107, 730
TatI WGTACW 2 cut(s) 664, 1350
TauI GCSGC 2 cut(s) 1067, 1199
TfiI GAWTC 3 cut(s) 634, 718, 759
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 4 cut(s) 472, 1026, 1149, 1398
TseFI GTSAC 2 cut(s) 383, 415
TseI GCWGC 3 cut(s) 82, 85, 374
Tsp45I GTSAC 2 cut(s) 383, 415
TspDTI ATGAA 5 cut(s) 128, 490, 824, 861, 1392
TspGWI ACGGA 1 cut(s) 271
TspRI CASTG 4 cut(s) 472, 1026, 1149, 1398
Tth111I GACNNNGTC 2 cut(s) 97, 139
VneI GTGCAC 1 cut(s) 1026
VpaK11BI GGWCC 2 cut(s) 268, 818
XapI RAATTY 2 cut(s) 742, 1379
XceI RCATGY 1 cut(s) 859
XcmI CCANNNNNNNNNTGG 2 cut(s) 600, 1355
XmaJI CCTAGG 1 cut(s) 200
XspI CTAG 4 cut(s) 201, 572, 687, 827
ZraI GACGTC 2 cut(s) 96, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.