RchiOBHm_Chr7g0183771

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002611
Physical Location & Seq
Forward (+)
4535609 .. 4539402
3794 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16397

Sequence Viewer

Length: 1548 bp
ATGTGCAAGGTGGAGAAGGAGAGAAGAGGAGTGATGGGGATAAAGGGGCTGGGAGGTGGAGATAAGCTGAAGAACTCGCTGCTGCAAACGACGTCGTCCAGGTCGAGAATGAAGCTGTGGATGATAAGGGCCACGACGTCGGTTTTGCTCTGGACGTGCGTCGTGCAATTGACGGCCTTGGGGGATATGTGGGGGCCTAGGGTTTTGAAGGGATGGCCGTCCTGCTTCTCCCAGGAGAGTGCCGTGGCCTCCTCGGTTTTGCAGGACCGGATGATTTCCGTTCCGGCCAGAGTTCTTCCGCCAAAGAGGGTTTACAAAAACAATGGCTACCTCATGGTTTCGTGCAATGGGGGACTCAATCAAATGAGAGCAGCGATATGTGACATGGTTGCTATTGCAAGGTATTTGAATGTCACGCTCGTAGTTCCCGAACTTGATAAAACGTCCTTTTGGGCTGATCCCAGTGAGTTTCAAGACATTTTTGATGTGGATCATTTCATCACATCCTTGAGAGATGAGGTTCGGATATTGAAAGAGTTGCCTCCCAGGGTTAAGAGAAGAGTGGAACTAGGAATGGTTTATACCATGCCACCAGTTAGTTGGTCTGACATATCTTATTATCATAATCAGATTCTTCCTCTGATACAAAAATACAAAGTTGTACATTTGAATAAAACTGATGCTAGACTGGCCAATAATGGACAACCCTTGGAGATTCAGAAACTTCGATGCCGAGTAAATTTTAGTGCTCTGCGATTCACTTCTCAAATAGAGGAATTGGGTAGAAGGGTCATAAATCTTCTTAGGGCAAAAGGTCCTTTCCTAGTTCTTCATCTTAGATATGAAATGGACATGTTGGCATTTTCTGGCTGTACCCAAGGTTGCAACGCTGAGGAGGTGGAAGAGTTGACAAGGATGAGATATGCTTATCCCTGGTGGAAGGAGAAAATAATAAACTCTGACCTGAAAAGGAAAGATGGTTTGTGTCCTTTGACACCAGAAGAAACTGCTCTCACACTGAGTGCACTTGAAATTGATCCCAACATCCAGATCTATATTGCCGCTGGTGAAATCTACGGTGGTGAGAGGAGAATGGCAAGTCTTGCAAAGGCTTTTCCAAAATTGGTCAGAAAGGAGACACTGTTAGAACCGTCAGACCTCAGGTTCTTTCAAAACCACTCCTCCCAAATGGCAGCATTGGATTATCTCGTCTCGTTGGAGAGTGATATCTTTGTTCCCACATATGATGGAAACATGGCTAAAGTTGTTGAAGGCCATCGCAGATTTCTCGGGTTCAAGAAGACAATTCTGCTGGACAGAAGGCTTCTTGTTGATTTGATAGACCAGTACAATGGTGGAGAATTGAATTGGGATGAATTCTCTTCTGCAGTGAAGGAAGCTCATGCAGAACGCATGGGTAACCCAATTAAAAGGTTGATGATCCAAGACAGACCTAAAGAGGAGGACTATTTCTATGCCAATCCAGAAGAGTGTTTGCAATTGTCAGATGATGAGCAATTATCAGATGGGCTATTGAGTAGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

515

Amino Acids

58.85

Weight (kDa)

8.38

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 110 - 429 3.1e-106 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 95, 140
AciI CCGC 2 cut(s) 299, 1062
AclWI GGATC 4 cut(s) 452, 498, 1031, 1435
AcoI YGGCCR 3 cut(s) 215, 285, 690
AcsI RAATTY 2 cut(s) 739, 1376
AcuI CTGAAG 1 cut(s) 89
AcyI GRCGYC 2 cut(s) 92, 137
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 3 cut(s) 663, 874, 1349
AflIII ACRYGT 1 cut(s) 852
AjiI CACGTC 1 cut(s) 156
AjnI CCWGG 4 cut(s) 98, 231, 545, 932
AluBI AGCT 3 cut(s) 67, 115, 1400
AluI AGCT 3 cut(s) 67, 115, 1400
Alw21I GWGCWC 2 cut(s) 751, 1027
Alw26I GTCTC 2 cut(s) 1130, 1216
Alw44I GTGCAC 1 cut(s) 1023
AlwI GGATC 4 cut(s) 452, 498, 1031, 1435
Ama87I CYCGRG 1 cut(s) 1289
AoxI GGCC 8 cut(s) 129, 174, 194, 215, 246, 285, 690, 1273
ApaLI GTGCAC 1 cut(s) 1023
ApeKI GCWGC 4 cut(s) 79, 82, 371, 1193
ApoI RAATTY 2 cut(s) 739, 1376
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AspA2I CCTAGG 1 cut(s) 197
AspS9I GGNCC 4 cut(s) 129, 194, 265, 815
AsuHPI GGTGA 2 cut(s) 1079, 1094
AvaI CYCGRG 1 cut(s) 1289
AvaII GGWCC 2 cut(s) 265, 815
AvrII CCTAGG 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 1160
BaeGI GKGCMC 1 cut(s) 1027
BalI TGGCCA 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 1307
Bbv12I GWGCWC 2 cut(s) 751, 1027
BbvCI CCTCAGC 1 cut(s) 891
BbvI GCAGC 4 cut(s) 66, 69, 383, 1205
BccI CCATC 6 cut(s) 28, 207, 971, 1241, 1284, 1520
BceAI ACGGC 3 cut(s) 189, 202, 227
BcgI CGANNNNNNTGC 2 cut(s) 1270, 1304
BciT130I CCWGG 4 cut(s) 100, 233, 547, 934
BcoDI GTCTC 2 cut(s) 1130, 1216
BfaI CTAG 4 cut(s) 198, 569, 684, 824
BfmI CTRYAG 1 cut(s) 1386
BglII AGATCT 1 cut(s) 1050
BisI GCNGC 5 cut(s) 80, 83, 372, 1062, 1194
BlnI CCTAGG 1 cut(s) 197
BlsI GCNGC 5 cut(s) 81, 84, 373, 1063, 1195
Bme1390I CCNGG 4 cut(s) 100, 233, 547, 934
Bme18I GGWCC 2 cut(s) 265, 815
BmeT110I CYCGRG 1 cut(s) 1289
BmgBI CACGTC 1 cut(s) 156
BmgT120I GGNCC 4 cut(s) 129, 194, 265, 815
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 4 cut(s) 100, 233, 547, 934
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 2 cut(s) 670, 719
BmuI ACTGGG 1 cut(s) 456
BoxI GACNNNNGTC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 1307
Bpu10I CCTNAGC 1 cut(s) 891
BpuEI CTTGAG 1 cut(s) 529
BsaBI GATNNNNATC 1 cut(s) 489
BsaHI GRCGYC 2 cut(s) 92, 137
BsaWI WCCGGW 1 cut(s) 267
BsaXI ACNNNNNCTCC 4 cut(s) 1127, 1157, 1166, 1196
Bse1I ACTGG 4 cut(s) 462, 593, 693, 1345
Bse21I CCTNAGG 1 cut(s) 1160
Bse3DI GCAATG 1 cut(s) 352
Bse8I GATNNNNATC 1 cut(s) 489
BseBI CCWGG 4 cut(s) 100, 233, 547, 934
BseGI GGATG 7 cut(s) 126, 218, 276, 503, 921, 1044, 1378
BseJI GATNNNNATC 1 cut(s) 489
BseMI GCAATG 1 cut(s) 352
BseMII CTCAG 3 cut(s) 882, 1010, 1174
BseNI ACTGG 4 cut(s) 462, 593, 693, 1345
BseRI GAGGAG 6 cut(s) 42, 241, 908, 1102, 1171, 1475
BseSI GKGCMC 1 cut(s) 1027
BseXI GCAGC 4 cut(s) 66, 69, 383, 1205
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 8 cut(s) 131, 176, 196, 217, 248, 287, 692, 1275
BsiHKAI GWGCWC 2 cut(s) 751, 1027
BsiHKCI CYCGRG 1 cut(s) 1289
BsiSI CCGG 2 cut(s) 268, 284
BslFI GGGAC 1 cut(s) 366
BsmAI GTCTC 2 cut(s) 1130, 1216
BsmBI CGTCTC 1 cut(s) 1216
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 8 cut(s) 131, 176, 196, 217, 248, 287, 692, 1275
BsoBI CYCGRG 1 cut(s) 1289
Bsp1286I GDGCHC 2 cut(s) 751, 1027
Bsp1407I TGTACA 1 cut(s) 661
Bsp143I GATC 5 cut(s) 457, 490, 1036, 1050, 1440
BspACI CCGC 2 cut(s) 299, 1062
BspANI GGCC 8 cut(s) 131, 176, 196, 217, 248, 287, 692, 1275
BspCNI CTCAG 3 cut(s) 883, 1011, 1173
BspLI GGNNCC 1 cut(s) 195
BspMAI CTGCAG 1 cut(s) 1390
BspPI GGATC 4 cut(s) 452, 498, 1031, 1435
BsrDI GCAATG 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 661
BsrI ACTGG 4 cut(s) 462, 593, 693, 1345
BssMI GATC 5 cut(s) 457, 490, 1036, 1050, 1440
BssNI GRCGYC 2 cut(s) 92, 137
BssT1I CCWWGG 4 cut(s) 177, 197, 708, 877
Bst2UI CCWGG 4 cut(s) 100, 233, 547, 934
Bst4CI ACNGT 3 cut(s) 1079, 1143, 1152
Bst6I CTCTTC 5 cut(s) 19, 553, 897, 1387, 1482
BstACI GRCGYC 2 cut(s) 92, 137
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 661
BstDEI CTNAG 5 cut(s) 803, 836, 891, 1019, 1160
BstDSI CCRYGG 1 cut(s) 243
BstEII GGTNACC 1 cut(s) 1418
BstF5I GGATG 7 cut(s) 126, 218, 276, 503, 921, 1044, 1378
BstKTI GATC 5 cut(s) 460, 493, 1039, 1053, 1443
BstMAI GTCTC 2 cut(s) 1130, 1216
BstMBI GATC 5 cut(s) 457, 490, 1036, 1050, 1440
BstMWI GCNNNNNNNGC 2 cut(s) 689, 1103
BstNI CCWGG 4 cut(s) 100, 233, 547, 934
BstNSI RCATGY 1 cut(s) 856
BstPAI GACNNNNGTC 1 cut(s) 158
BstPI GGTNACC 1 cut(s) 1418
BstSCI CCNGG 4 cut(s) 98, 231, 545, 932
BstSFI CTRYAG 1 cut(s) 1386
BstSLI GKGCMC 1 cut(s) 1027
BstV1I GCAGC 4 cut(s) 66, 69, 383, 1205
BstV2I GAAGAC 1 cut(s) 1307
BstX2I RGATCY 1 cut(s) 1050
BstXI CCANNNNNNTGG 2 cut(s) 600, 1352
BstYI RGATCY 1 cut(s) 1050
Bsu36I CCTNAGG 1 cut(s) 1160
BsuRI GGCC 8 cut(s) 131, 176, 196, 217, 248, 287, 692, 1275
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 1262
BtrI CACGTC 1 cut(s) 156
BtsCI GGATG 7 cut(s) 126, 218, 276, 503, 921, 1044, 1378
BtsI GCAGTG 1 cut(s) 1395
BtsIMutI CAGTG 4 cut(s) 469, 1016, 1139, 1395
Cfr13I GGNCC 4 cut(s) 129, 194, 265, 815
CseI GACGC 1 cut(s) 148
Csp6I GTAC 3 cut(s) 662, 873, 1348
CviAII CATG 7 cut(s) 334, 385, 586, 853, 1255, 1403, 1414
CviQI GTAC 3 cut(s) 662, 873, 1348
DdeI CTNAG 5 cut(s) 803, 836, 891, 1019, 1160
DpnI GATC 5 cut(s) 459, 492, 1038, 1052, 1442
DpnII GATC 5 cut(s) 457, 490, 1036, 1050, 1440
DraIII CACNNNGTG 1 cut(s) 1022
EaeI YGGCCR 3 cut(s) 215, 285, 690
Eam1104I CTCTTC 5 cut(s) 19, 553, 897, 1387, 1482
EarI CTCTTC 5 cut(s) 19, 553, 897, 1387, 1482
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 4 cut(s) 177, 197, 708, 877
Eco32I GATATC 1 cut(s) 1228
Eco47I GGWCC 2 cut(s) 265, 815
Eco57I CTGAAG 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 1160
Eco88I CYCGRG 1 cut(s) 1289
Eco91I GGTNACC 1 cut(s) 1418
EcoO109I RGGNCCY 2 cut(s) 194, 815
EcoO65I GGTNACC 1 cut(s) 1418
EcoRI GAATTC 1 cut(s) 1376
EcoRII CCWGG 4 cut(s) 98, 231, 545, 932
EcoRV GATATC 1 cut(s) 1228
EcoT14I CCWWGG 4 cut(s) 177, 197, 708, 877
ErhI CCWWGG 4 cut(s) 177, 197, 708, 877
Esp3I CGTCTC 1 cut(s) 1216
FaeI CATG 7 cut(s) 337, 388, 589, 856, 1258, 1406, 1417
FaqI GGGAC 1 cut(s) 366
FatI CATG 7 cut(s) 333, 384, 585, 852, 1254, 1402, 1413
FauNDI CATATG 1 cut(s) 1243
Fnu4HI GCNGC 5 cut(s) 80, 83, 372, 1062, 1194
FokI GGATG 7 cut(s) 133, 225, 283, 490, 928, 1031, 1385
Fsp4HI GCNGC 5 cut(s) 80, 83, 372, 1062, 1194
FspBI CTAG 4 cut(s) 198, 569, 684, 824
GluI GCNGC 5 cut(s) 80, 83, 372, 1062, 1194
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 8 cut(s) 131, 176, 196, 217, 248, 287, 692, 1275
HapII CCGG 2 cut(s) 268, 284
HgaI GACGC 1 cut(s) 148
Hin1I GRCGYC 2 cut(s) 92, 137
Hin1II CATG 7 cut(s) 337, 388, 589, 856, 1258, 1406, 1417
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HinfI GANTC 4 cut(s) 354, 631, 715, 756
HpaII CCGG 2 cut(s) 268, 284
HphI GGTGA 2 cut(s) 1079, 1094
Hpy166II GTNNAC 3 cut(s) 313, 909, 1025
Hpy188III TCNNGA 7 cut(s) 105, 151, 428, 473, 1048, 1297, 1484
Hpy8I GTNNAC 3 cut(s) 313, 909, 1025
Hpy99I CGWCG 5 cut(s) 94, 97, 139, 142, 164
HpyAV CCTTC 7 cut(s) 10, 202, 780, 934, 1265, 1314, 1387
HpyCH4III ACNGT 3 cut(s) 1079, 1143, 1152
HpyCH4IV ACGT 4 cut(s) 92, 137, 155, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 1103
HpyF3I CTNAG 5 cut(s) 803, 836, 891, 1019, 1160
HpySE526I ACGT 4 cut(s) 92, 137, 155, 443
Hsp92I GRCGYC 2 cut(s) 92, 137
Hsp92II CATG 7 cut(s) 337, 388, 589, 856, 1258, 1406, 1417
Kzo9I GATC 5 cut(s) 457, 490, 1036, 1050, 1440
Lsp1109I GCAGC 4 cut(s) 66, 69, 383, 1205
LweI GCATC 2 cut(s) 670, 719
MaeI CTAG 4 cut(s) 198, 569, 684, 824
MaeII ACGT 4 cut(s) 92, 137, 155, 443
MaeIII GTNAC 3 cut(s) 380, 412, 1418
MalI GATC 5 cut(s) 459, 492, 1038, 1052, 1442
MboI GATC 5 cut(s) 457, 490, 1036, 1050, 1440
MfeI CAATTG 2 cut(s) 167, 1499
MflI RGATCY 1 cut(s) 1050
MhlI GDGCHC 2 cut(s) 751, 1027
MlsI TGGCCA 1 cut(s) 692
MluNI TGGCCA 1 cut(s) 692
MlyI GAGTC 1 cut(s) 348
MmeI TCCRAC 1 cut(s) 1197
Mox20I TGGCCA 1 cut(s) 692
MscI TGGCCA 1 cut(s) 692
MseI TTAA 2 cut(s) 552, 1428
Msp20I TGGCCA 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 1064
MspI CCGG 2 cut(s) 268, 284
MspR9I CCNGG 4 cut(s) 100, 233, 547, 934
MunI CAATTG 2 cut(s) 167, 1499
MvaI CCWGG 4 cut(s) 100, 233, 547, 934
MwoI GCNNNNNNNGC 2 cut(s) 689, 1103
NdeI CATATG 1 cut(s) 1243
NdeII GATC 5 cut(s) 457, 490, 1036, 1050, 1440
NlaIII CATG 7 cut(s) 337, 388, 589, 856, 1258, 1406, 1417
NlaIV GGNNCC 1 cut(s) 195
NmeAIII GCCGAG 1 cut(s) 758
NmuCI GTSAC 2 cut(s) 380, 412
NspI RCATGY 1 cut(s) 856
PasI CCCWGGG 1 cut(s) 546
PciI ACATGT 1 cut(s) 852
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 426
PfeI GAWTC 3 cut(s) 631, 715, 756
PflFI GACNNNGTC 1 cut(s) 94
PkrI GCNGC 5 cut(s) 81, 84, 373, 1063, 1195
PleI GAGTC 1 cut(s) 348
PpsI GAGTC 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 815
PscI ACATGT 1 cut(s) 852
PshAI GACNNNNGTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 815
Psp6I CCWGG 4 cut(s) 98, 231, 545, 932
PspEI GGTNACC 1 cut(s) 1418
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 4 cut(s) 98, 231, 545, 932
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 4 cut(s) 129, 194, 265, 815
PspPPI RGGWCCY 1 cut(s) 815
PstI CTGCAG 1 cut(s) 1390
PsuI RGATCY 1 cut(s) 1050
PsyI GACNNNGTC 1 cut(s) 94
RsaI GTAC 3 cut(s) 663, 874, 1349
RsaNI GTAC 3 cut(s) 662, 873, 1348
SaqAI TTAA 2 cut(s) 552, 1428
SatI GCNGC 5 cut(s) 80, 83, 372, 1062, 1194
Sau3AI GATC 5 cut(s) 457, 490, 1036, 1050, 1440
Sau96I GGNCC 4 cut(s) 129, 194, 265, 815
SchI GAGTC 1 cut(s) 348
ScrFI CCNGG 4 cut(s) 100, 233, 547, 934
SduI GDGCHC 2 cut(s) 751, 1027
SfaNI GCATC 2 cut(s) 670, 719
SfcI CTRYAG 1 cut(s) 1386
SinI GGWCC 2 cut(s) 265, 815
SmlI CTYRAG 1 cut(s) 508
SmoI CTYRAG 1 cut(s) 508
SsiI CCGC 2 cut(s) 299, 1062
SspMI CTAG 4 cut(s) 198, 569, 684, 824
StyD4I CCNGG 4 cut(s) 98, 231, 545, 932
StyI CCWWGG 4 cut(s) 177, 197, 708, 877
TaaI ACNGT 3 cut(s) 1079, 1143, 1152
TaiI ACGT 4 cut(s) 95, 140, 158, 446
TaqI TCGA 2 cut(s) 104, 727
TatI WGTACW 2 cut(s) 661, 1347
TauI GCSGC 1 cut(s) 1064
TfiI GAWTC 3 cut(s) 631, 715, 756
Tru1I TTAA 2 cut(s) 552, 1428
Tru9I TTAA 2 cut(s) 552, 1428
TscAI CASTG 4 cut(s) 469, 1023, 1146, 1395
TseFI GTSAC 2 cut(s) 380, 412
TseI GCWGC 4 cut(s) 79, 82, 371, 1193
Tsp45I GTSAC 2 cut(s) 380, 412
TspDTI ATGAA 5 cut(s) 125, 487, 821, 858, 1389
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 4 cut(s) 469, 1023, 1146, 1395
Tth111I GACNNNGTC 1 cut(s) 94
VneI GTGCAC 1 cut(s) 1023
VpaK11BI GGWCC 2 cut(s) 265, 815
XapI RAATTY 2 cut(s) 739, 1376
XceI RCATGY 1 cut(s) 856
XcmI CCANNNNNNNNNTGG 2 cut(s) 597, 1352
XmaJI CCTAGG 1 cut(s) 197
XspI CTAG 4 cut(s) 198, 569, 684, 824
ZraI GACGTC 2 cut(s) 93, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.