Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004856

Physical Location & Seq

Genomic Coordinates Forward (+)

22184130 .. 22185799

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18400.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTTTTATACCATGCCACCTATTAGTTGGTCTGATATGTCTTATTATCGTAAACAGATTCTTCCGCTGATACAAAAATACAAAGTTGTACATCTGAATAGAACTGATGCTCGACTTGCCAATAACGGACAACCTTTGGAGATTCAGAAACTTCGCTGCCGAGTTAATTTCAGTGCTCTGAGATTCACTTCTCAGATAGAGGAGTTGGGCAGAAGGGTTATCAGGCTTCTAAGGCAAAATGGTCCATTCCTTGTACTTCATCTTAGATATGAAATGGACATGTTGGCATTTTCTGGTTGTACTCAAGGTTGTAACATCGAGGAGGTGGAAGAGTTGACAAGAATGAGATATGCTTATCCCTGGTGGAAAGAGAAAATAATAAATTCTGACCTGAAAAGGAAAGATGGTTTCTGTCCTCTGACACCTGAAGAAACTGCTCTTACACTGAGTGCCCTTGACATTGACCGGGATATTCAGATTTATATCGCAGCTGGTGAAATCTATGGCGCAGAGAGGAGAATGGCAAGTCTTCGAGAGGCTTTTCCAAAATTGGTCAGAAAAGAGACACTGTTGGAACCATCAGACCTTAGGTTCTTTCAAAACCACTCATCCCAAATGGCAGCATTGGATTATCTTGTCTCATTGGAGAGTGATATCTTCGTTCCCACATATGATGGAAACATGGCTAAAGTGGTTGAAGGCCATCGCAGGTTTCTTGGGTTCAAGAAGACAATCTTACTGGACAGAAGGCTTCTTGTTGATTTGATAGACCGGTACACTAGTGGGTCATTGAATTGGGATGAATTTTCATCTGCAGTAAAGGGAGCTCATGCAAATCGCATGGGGAAACCAACTAATAGGTTGATGATCCAAGACCGACCTAAAGAGGAGGACTATTTCTATGCCAACCCAGTAGAGTGTTTGCAACCATCAGATGATGAACTAAGTAGTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

319

Amino Acids

37.04

Weight (kDa)

7.62

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29240 FvH4_4g29250 FvH4_5g13360 FvH4_5g13360
prunus_persica	Prupe.1G294000_v2.0.a1 Prupe.1G294100_v2.0.a1
pyrus_communis	pycom06g18400
rosa_chinensis	RchiOBHm_Chr4g0437291 RchiOBHm_Chr4g0437301
rosa_laevigata	RLG00000006448 RLG00000006449
rosa_multiflora	Rmu_co8522681.1_g000002 Rmu_sc0004339.1_g000032 Rmu_sc0004339.1_g000033
rosa_roxburghii	Rroxscaffold_5G00378430 Rroxscaffold_5G00378450
rosa_rugosa	Rorug04G0299300 Rorug04G0299300 Rorug04G0299300 Rorug04G0299400
rosa_samantha	Rh4AG354100 Rh4AG354300 Rh4BG364000 Rh4BG364100 Rh4CG378300 Rh4CG378500 Rh4DG358000 Rh4DG358100 Rh7BG061000
rosa_wichuraiana	Rw4G031060 Rw4G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	699
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	862
AcsI	RAATTY	2 cut(s)	382, 803
AcuI	CTGAAG	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	5 cut(s)	90, 255, 301, 776, 952
AflIII	ACRYGT	1 cut(s)	279
AgeI	ACCGGT	1 cut(s)	771
AgsI	TTSAA	4 cut(s)	599, 698, 724, 793
AhlI	ACTAGT	1 cut(s)	779
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	491, 827
AluI	AGCT	2 cut(s)	491, 827
Alw21I	GWGCWC	2 cut(s)	178, 829
Alw26I	GTCTC	2 cut(s)	557, 643
AlwI	GGATC	1 cut(s)	862
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	3 cut(s)	156, 488, 620
ApoI	RAATTY	2 cut(s)	382, 803
AsiGI	ACCGGT	1 cut(s)	771
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	454
BaeI	ACNNNNGTAYC	2 cut(s)	766, 799
BanII	GRGCYC	1 cut(s)	829
BbsI	GAAGAC	2 cut(s)	521, 734
Bbv12I	GWGCWC	2 cut(s)	178, 829
BbvI	GCAGC	3 cut(s)	143, 500, 632
BccI	CCATC	5 cut(s)	398, 586, 668, 711, 937
BciT130I	CCWGG	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	2 cut(s)	557, 643
BcuI	ACTAGT	1 cut(s)	779
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	813
BfuAI	ACCTGC	1 cut(s)	699
BisI	GCNGC	3 cut(s)	157, 489, 621
BlsI	GCNGC	3 cut(s)	158, 490, 622
Bme1390I	CCNGG	2 cut(s)	361, 467
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	2 cut(s)	361, 467
BmrI	ACTGGG	1 cut(s)	905
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	905
BpiI	GAAGAC	2 cut(s)	521, 734
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	954
BsaBI	GATNNNNATC	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	359
BsaWI	WCCGGW	1 cut(s)	771
Bse118I	RCCGGY	1 cut(s)	771
Bse1I	ACTGG	2 cut(s)	744, 911
Bse21I	CCTNAGG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	359
BseGI	GGATG	2 cut(s)	608, 805
BseJI	GATNNNNATC	1 cut(s)	482
BseMII	CTCAG	3 cut(s)	170, 206, 437
BseNI	ACTGG	2 cut(s)	744, 911
BseRI	GAGGAG	4 cut(s)	215, 335, 529, 902
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	3 cut(s)	143, 500, 632
BshFI	GGCC	1 cut(s)	702
BshTI	ACCGGT	1 cut(s)	771
BsiHKAI	GWGCWC	2 cut(s)	178, 829
BsiSI	CCGG	2 cut(s)	466, 772
BsmAI	GTCTC	2 cut(s)	557, 643
BsnI	GGCC	1 cut(s)	702
Bsp1286I	GDGCHC	3 cut(s)	178, 454, 829
Bsp1407I	TGTACA	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	867
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	3 cut(s)	171, 205, 438
BspLI	GGNNCC	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	817
BspMI	ACCTGC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	862
BsrFI	RCCGGY	1 cut(s)	771
BsrGI	TGTACA	1 cut(s)	88
BsrI	ACTGG	2 cut(s)	744, 911
BssAI	RCCGGY	1 cut(s)	771
BssECI	CCNNGG	1 cut(s)	359
BssMI	GATC	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	570
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	954
BstDEI	CTNAG	7 cut(s)	179, 192, 230, 263, 446, 587, 944
BstF5I	GGATG	2 cut(s)	608, 805
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	1 cut(s)	870
BstMAI	GTCTC	2 cut(s)	557, 643
BstMBI	GATC	1 cut(s)	867
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 232
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	359, 465
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	3 cut(s)	143, 500, 632
BstV2I	GAAGAC	2 cut(s)	521, 734
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	689
BtsCI	GGATG	2 cut(s)	608, 805
BtsIMutI	CAGTG	3 cut(s)	178, 443, 566
BveI	ACCTGC	1 cut(s)	699
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	771
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	5 cut(s)	89, 254, 300, 775, 951
CspAI	ACCGGT	1 cut(s)	771
CviAII	CATG	5 cut(s)	13, 280, 682, 830, 841
CviJI	RGCY	7 cut(s)	226, 491, 539, 686, 702, 751, 827
CviKI_1	RGCY	7 cut(s)	226, 491, 539, 686, 702, 751, 827
CviQI	GTAC	5 cut(s)	89, 254, 300, 775, 951
DdeI	CTNAG	7 cut(s)	179, 192, 230, 263, 446, 587, 944
DpnI	GATC	1 cut(s)	869
DpnII	GATC	1 cut(s)	867
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	827
Eco24I	GRGCYC	1 cut(s)	829
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	829
FaeI	CATG	5 cut(s)	16, 283, 685, 833, 844
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FatI	CATG	5 cut(s)	12, 279, 681, 829, 840
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	3 cut(s)	157, 489, 621
FokI	GGATG	2 cut(s)	595, 812
FriOI	GRGCYC	1 cut(s)	829
Fsp4HI	GCNGC	3 cut(s)	157, 489, 621
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	3 cut(s)	157, 489, 621
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	2 cut(s)	466, 772
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	5 cut(s)	16, 283, 685, 833, 844
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HinfI	GANTC	3 cut(s)	58, 142, 183
HpaII	CCGG	2 cut(s)	466, 772
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	3 cut(s)	53, 336, 777
Hpy188III	TCNNGA	2 cut(s)	533, 724
Hpy8I	GTNNAC	3 cut(s)	53, 336, 777
HpyAV	CCTTC	3 cut(s)	207, 692, 741
HpyCH4III	ACNGT	1 cut(s)	570
HpyCH4IV	ACGT	1 cut(s)	953
HpyCH4V	TGCA	3 cut(s)	815, 833, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 232
HpyF3I	CTNAG	7 cut(s)	179, 192, 230, 263, 446, 587, 944
HpySE526I	ACGT	1 cut(s)	953
Hsp92II	CATG	5 cut(s)	16, 283, 685, 833, 844
HspAI	GCGC	1 cut(s)	507
Kzo9I	GATC	1 cut(s)	867
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	3 cut(s)	143, 500, 632
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	953
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	869
MboI	GATC	1 cut(s)	867
MboII	GAAGA	6 cut(s)	53, 341, 440, 521, 649, 739
MhlI	GDGCHC	3 cut(s)	178, 454, 829
MluCI	AATT	5 cut(s)	166, 382, 548, 793, 803
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	8 cut(s)	193, 313, 316, 426, 507, 529, 880, 883
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	2 cut(s)	67, 491
MspI	CCGG	2 cut(s)	466, 772
MspR9I	CCNGG	2 cut(s)	361, 467
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	116, 232
NciI	CCSGG	1 cut(s)	467
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	1 cut(s)	867
NlaIII	CATG	5 cut(s)	16, 283, 685, 833, 844
NlaIV	GGNNCC	1 cut(s)	576
NmeAIII	GCCGAG	1 cut(s)	185
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	58, 142, 183
PinAI	ACCGGT	1 cut(s)	771
PkrI	GCNGC	3 cut(s)	158, 490, 622
Ppu21I	YACGTR	1 cut(s)	954
PscI	ACATGT	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	829
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	5 cut(s)	90, 255, 301, 776, 952
RsaNI	GTAC	5 cut(s)	89, 254, 300, 775, 951
SacI	GAGCTC	1 cut(s)	829
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	3 cut(s)	157, 489, 621
Sau3AI	GATC	1 cut(s)	867
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	361, 467
SduI	GDGCHC	3 cut(s)	178, 454, 829
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	242
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	779
Sse9I	AATT	5 cut(s)	166, 382, 548, 793, 803
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	1 cut(s)	780
SstI	GAGCTC	1 cut(s)	829
StyD4I	CCNGG	2 cut(s)	359, 465
TaaI	ACNGT	1 cut(s)	570
TaiI	ACGT	1 cut(s)	956
TaqI	TCGA	3 cut(s)	112, 318, 532
TaqII	GACCGA	1 cut(s)	891
TasI	AATT	5 cut(s)	166, 382, 548, 793, 803
TatI	WGTACW	3 cut(s)	88, 253, 299
TfiI	GAWTC	3 cut(s)	58, 142, 183
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	3 cut(s)	178, 450, 573
TseI	GCWGC	3 cut(s)	156, 488, 620
TspDTI	ATGAA	5 cut(s)	248, 285, 798, 816, 954
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	3 cut(s)	178, 450, 573
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	382, 803
XceI	RCATGY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.