Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004339.1

Orthogroup ID

OG0004856

Physical Location & Seq

Genomic Coordinates Reverse (-)

120665 .. 123374

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004339.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

atggacaaaaccaaagctggtttagaaggatctgaatttggagaagcaaaagttaagcatcagaagaatatggactactatttgaaggatataatgggagggatcaaagtattcaagggagagaagttaacgagcttgatggtttcgcagtcacgattctgcagactcaaactgttagcagctgcagccacaaccatgttgctactctgcgcctgcgctgtgcagtacaccacgctcagcgatacaatgaagccacgcgtgctgatatttcgttcttctcaacattttgctcctccacagagtagtactgctgatattgaagtccgcatattgaaagttctgccccagaagcagagaagaagaatagaaatggcttccctctattccatgccccctgctagttggtctaatatgacgttttactacaacagggttcttcctcagataaagaagtatgaagtactgcatttcactaaaactgatacaagacttgccaataatgggatccctgtggaagttcagaaaatgcgctgcaaagcaaattatgaagccctgaggttcactcccccaattgaggaattggggaagaagattgtaaggattctgagagaaaggggcccgttcttagttcttcatctcagatatgaaatggacatgttagccttttcgggttgtactgaaggctgcgatgacaaagaaatcgaagaattgacaaatatgagatatgcttatccatggtggaaagagaaagtaattaattccaccaaaaaaagaaaatctgggaaatgcccattaactcccgaggagactgctcttgcactgagggcattggatatcgatcctagtatccaagtatacatagctgcaggtgatatttatgggggagaaaaacgaatggcatctctgagattagcctttccacacatagttaagaaagaaacattgctggaagcctcagaccttgagcccttccgaaaccattcgaaccaaatggctgcattggattacgttgtgtcactggaaagtgatatcttcgctccaacttatggaggaaacatggcaagagttgtcgaaggccatagacggtacttaggtttcaggacaacaattcgtctggacagaatgcttctagtgaatttgatagaccagtacaagaagggtagactgagctgggatgaattttcccaggcagtgaaaacaggacatgccgatcgcatgggtagccctacacaaagattggagattcctggtaaacccaaggaagaggaatacttctataacaatccacaggaatgtttaccaccaatttctacaaaaccaaagaggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

443

Amino Acids

50.8

Weight (kDa)

9.4

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004856)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g29240 FvH4_4g29250 FvH4_5g13360 FvH4_5g13360
prunus_persica	Prupe.1G294000_v2.0.a1 Prupe.1G294100_v2.0.a1
pyrus_communis	pycom06g18400
rosa_chinensis	RchiOBHm_Chr4g0437291 RchiOBHm_Chr4g0437301
rosa_laevigata	RLG00000006448 RLG00000006449
rosa_multiflora	Rmu_co8522681.1_g000002 Rmu_sc0004339.1_g000032 Rmu_sc0004339.1_g000033
rosa_roxburghii	Rroxscaffold_5G00378430 Rroxscaffold_5G00378450
rosa_rugosa	Rorug04G0299300 Rorug04G0299300 Rorug04G0299300 Rorug04G0299400
rosa_samantha	Rh4AG354100 Rh4AG354300 Rh4BG364000 Rh4BG364100 Rh4CG378300 Rh4CG378500 Rh4DG358000 Rh4DG358100 Rh7BG061000
rosa_wichuraiana	Rw4G031060 Rw4G031070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	857
Acc36I	ACCTGC	1 cut(s)	857
AccB7I	CCANNNNNTGG	1 cut(s)	1046
AccI	GTMKAC	2 cut(s)	855, 1162
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	5 cut(s)	37, 110, 499, 512, 833
AcsI	RAATTY	3 cut(s)	35, 1135, 1178
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	6 cut(s)	227, 307, 462, 676, 1088, 1151
AfiI	CCNNNNNNNGG	3 cut(s)	501, 574, 1046
AflIII	ACRYGT	2 cut(s)	256, 654
AgsI	TTSAA	4 cut(s)	85, 115, 320, 334
AjnI	CCWGG	2 cut(s)	1185, 1246
AluBI	AGCT	5 cut(s)	17, 135, 182, 863, 1170
AluI	AGCT	5 cut(s)	17, 135, 182, 863, 1170
Alw26I	GTCTC	1 cut(s)	800
AlwI	GGATC	5 cut(s)	37, 110, 499, 512, 833
Ama87I	CYCGRG	1 cut(s)	800
AoxI	GGCC	2 cut(s)	616, 1075
ApaI	GGGCCC	1 cut(s)	620
ApeKI	GCWGC	7 cut(s)	179, 182, 185, 531, 684, 863, 995
ApoI	RAATTY	3 cut(s)	35, 1135, 1178
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	1 cut(s)	979
AspLEI	GCGC	3 cut(s)	212, 218, 531
AspS9I	GGNCC	2 cut(s)	616, 617
AsuHPI	GGTGA	1 cut(s)	881
AsuII	TTCGAA	1 cut(s)	983
AvaI	CYCGRG	1 cut(s)	800
AxyI	CCTNAGG	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	620
BaeI	ACNNNNGTAYC	2 cut(s)	1078, 1111
BamHI	GGATCC	1 cut(s)	504
BanII	GRGCYC	2 cut(s)	620, 969
BbvI	GCAGC	7 cut(s)	169, 191, 197, 518, 671, 850, 982
BccI	CCATC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	2 cut(s)	1187, 1248
BciVI	GTATCC	1 cut(s)	857
BcoDI	GTCTC	1 cut(s)	800
BfaI	CTAG	3 cut(s)	399, 843, 1130
BfmI	CTRYAG	3 cut(s)	160, 183, 864
BfuAI	ACCTGC	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	857
BisI	GCNGC	7 cut(s)	180, 183, 186, 532, 685, 864, 996
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	7 cut(s)	181, 184, 187, 533, 686, 865, 997
BmcAI	AGTACT	2 cut(s)	307, 462
Bme1390I	CCNGG	2 cut(s)	1187, 1248
BmeT110I	CYCGRG	1 cut(s)	800
BmgT120I	GGNCC	2 cut(s)	616, 617
BmiI	GGNNCC	3 cut(s)	506, 617, 618
BmrFI	CCNGG	2 cut(s)	1187, 1248
BmsI	GCATC	2 cut(s)	67, 908
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
Bpu1102I	GCTNAGC	1 cut(s)	236
Bpu14I	TTCGAA	1 cut(s)	983
BpuEI	CTTGAG	1 cut(s)	983
Bsa29I	ATCGAT	1 cut(s)	837
BsaBI	GATNNNNATC	1 cut(s)	837
BsaJI	CCNNGG	4 cut(s)	734, 801, 1185, 1257
Bsc4I	CCNNNNNNNGG	3 cut(s)	501, 574, 1046
Bse1I	ACTGG	2 cut(s)	1023, 1147
Bse21I	CCTNAGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	941
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	1187, 1248
BseCI	ATCGAT	1 cut(s)	837
BseDI	CCNNGG	4 cut(s)	734, 801, 1185, 1257
BseGI	GGATG	1 cut(s)	1180
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	3 cut(s)	501, 574, 1046
BseMI	GCAATG	1 cut(s)	941
BseMII	CTCAG	9 cut(s)	250, 455, 545, 596, 652, 812, 896, 969, 1157
BseNI	ACTGG	2 cut(s)	1023, 1147
BseRI	GAGGAG	2 cut(s)	282, 818
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	7 cut(s)	169, 191, 197, 518, 671, 850, 982
BseYI	CCCAGC	1 cut(s)	1170
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	1213
BshFI	GGCC	2 cut(s)	618, 1077
BshVI	ATCGAT	1 cut(s)	837
BsiEI	CGRYCG	1 cut(s)	1213
BsiHKCI	CYCGRG	1 cut(s)	800
BslI	CCNNNNNNNGG	3 cut(s)	501, 574, 1046
BsmAI	GTCTC	1 cut(s)	800
BsmI	GAATGC	1 cut(s)	1128
BsnI	GGCC	2 cut(s)	618, 1077
BsoBI	CYCGRG	1 cut(s)	800
Bsp119I	TTCGAA	1 cut(s)	983
Bsp120I	GGGCCC	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	620, 969
Bsp143I	GATC	5 cut(s)	29, 102, 504, 838, 1210
Bsp1720I	GCTNAGC	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	734
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	618, 1077
BspCNI	CTCAG	9 cut(s)	249, 454, 546, 597, 651, 813, 897, 968, 1158
BspDI	ATCGAT	1 cut(s)	837
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	506, 617, 618
BspMAI	CTGCAG	3 cut(s)	164, 187, 868
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	5 cut(s)	37, 110, 499, 512, 833
BspT104I	TTCGAA	1 cut(s)	983
BsrDI	GCAATG	1 cut(s)	941
BsrI	ACTGG	2 cut(s)	1023, 1147
BssECI	CCNNGG	4 cut(s)	734, 801, 1185, 1257
BssMI	GATC	5 cut(s)	29, 102, 504, 838, 1210
BssNAI	GTATAC	1 cut(s)	856
BssT1I	CCWWGG	2 cut(s)	734, 1257
Bst1107I	GTATAC	1 cut(s)	856
Bst2UI	CCWGG	2 cut(s)	1187, 1248
Bst4CI	ACNGT	2 cut(s)	174, 1086
Bst6I	CTCTTC	1 cut(s)	1257
BstBI	TTCGAA	1 cut(s)	983
BstC8I	GCNNGC	2 cut(s)	214, 260
BstDSI	CCRYGG	1 cut(s)	734
BstF5I	GGATG	1 cut(s)	1180
BstFNI	CGCG	1 cut(s)	258
BstHHI	GCGC	3 cut(s)	212, 218, 531
BstKTI	GATC	5 cut(s)	32, 105, 507, 841, 1213
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	5 cut(s)	29, 102, 504, 838, 1210
BstMCI	CGRYCG	1 cut(s)	1213
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 259, 349, 824, 1221
BstNI	CCWGG	2 cut(s)	1187, 1248
BstNSI	RCATGY	2 cut(s)	658, 1208
BstSCI	CCNGG	2 cut(s)	1185, 1246
BstSFI	CTRYAG	3 cut(s)	160, 183, 864
BstSLI	GKGCMC	1 cut(s)	620
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	7 cut(s)	169, 191, 197, 518, 671, 850, 982
BstX2I	RGATCY	2 cut(s)	29, 504
BstYI	RGATCY	2 cut(s)	29, 504
BstZ17I	GTATAC	1 cut(s)	856
Bsu15I	ATCGAT	1 cut(s)	837
Bsu36I	CCTNAGG	1 cut(s)	554
BsuI	GTATCC	1 cut(s)	857
BsuRI	GGCC	2 cut(s)	618, 1077
BsuTUI	ATCGAT	1 cut(s)	837
BtgI	CCRYGG	1 cut(s)	734
BtgZI	GCGATG	1 cut(s)	702
BtsCI	GGATG	1 cut(s)	1180
BtsI	GCAGTG	1 cut(s)	1197
BtsIMutI	CAGTG	3 cut(s)	818, 1016, 1197
BveI	ACCTGC	1 cut(s)	857
Cac8I	GCNNGC	2 cut(s)	214, 260
CfoI	GCGC	3 cut(s)	212, 218, 531
Cfr13I	GGNCC	2 cut(s)	616, 617
ClaI	ATCGAT	1 cut(s)	837
Csp6I	GTAC	6 cut(s)	226, 306, 461, 675, 1087, 1150
CviAII	CATG	7 cut(s)	196, 388, 655, 735, 1057, 1205, 1216
CviQI	GTAC	6 cut(s)	226, 306, 461, 675, 1087, 1150
DpnI	GATC	5 cut(s)	31, 104, 506, 840, 1212
DpnII	GATC	5 cut(s)	29, 102, 504, 838, 1210
Eam1104I	CTCTTC	1 cut(s)	1257
EarI	CTCTTC	1 cut(s)	1257
Eco130I	CCWWGG	2 cut(s)	734, 1257
Eco24I	GRGCYC	2 cut(s)	620, 969
Eco32I	GATATC	2 cut(s)	835, 1030
Eco57I	CTGAAG	1 cut(s)	699
Eco81I	CCTNAGG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	1185, 1246
EcoRV	GATATC	2 cut(s)	835, 1030
EcoT14I	CCWWGG	2 cut(s)	734, 1257
EcoT38I	GRGCYC	2 cut(s)	620, 969
ErhI	CCWWGG	2 cut(s)	734, 1257
FaeI	CATG	7 cut(s)	199, 391, 658, 738, 1060, 1208, 1219
FatI	CATG	7 cut(s)	195, 387, 654, 734, 1056, 1204, 1215
FblI	GTMKAC	2 cut(s)	855, 1162
Fnu4HI	GCNGC	7 cut(s)	180, 183, 186, 532, 685, 864, 996
FokI	GGATG	1 cut(s)	1187
FriOI	GRGCYC	2 cut(s)	620, 969
Fsp4HI	GCNGC	7 cut(s)	180, 183, 186, 532, 685, 864, 996
FspBI	CTAG	3 cut(s)	399, 843, 1130
GlaI	GCGC	3 cut(s)	211, 217, 530
GluI	GCNGC	7 cut(s)	180, 183, 186, 532, 685, 864, 996
GsaI	CCCAGC	1 cut(s)	1174
HaeIII	GGCC	2 cut(s)	618, 1077
HhaI	GCGC	3 cut(s)	212, 218, 531
Hin1II	CATG	7 cut(s)	199, 391, 658, 738, 1060, 1208, 1219
Hin6I	GCGC	3 cut(s)	210, 216, 529
HinP1I	GCGC	3 cut(s)	210, 216, 529
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	4 cut(s)	156, 165, 601, 1243
HpaI	GTTAAC	1 cut(s)	129
HphI	GGTGA	1 cut(s)	881
Hpy166II	GTNNAC	7 cut(s)	129, 228, 561, 856, 1163, 1253, 1298
Hpy188I	TCNGA	9 cut(s)	34, 63, 444, 522, 606, 641, 906, 958, 974
Hpy188III	TCNNGA	4 cut(s)	153, 800, 1099, 1115
Hpy8I	GTNNAC	7 cut(s)	129, 228, 561, 856, 1163, 1253, 1298
HpyAV	CCTTC	6 cut(s)	20, 79, 674, 979, 1067, 1150
HpyCH4III	ACNGT	2 cut(s)	174, 1086
HpyCH4IV	ACGT	2 cut(s)	416, 1008
HpyCH4V	TGCA	8 cut(s)	162, 185, 223, 466, 534, 818, 866, 998
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 259, 349, 824, 1221
HpySE526I	ACGT	2 cut(s)	416, 1008
Hsp92II	CATG	7 cut(s)	199, 391, 658, 738, 1060, 1208, 1219
HspAI	GCGC	3 cut(s)	210, 216, 529
KspAI	GTTAAC	1 cut(s)	129
Kzo9I	GATC	5 cut(s)	29, 102, 504, 838, 1210
LmnI	GCTCC	2 cut(s)	295, 1042
Lsp1109I	GCAGC	7 cut(s)	169, 191, 197, 518, 671, 850, 982
LweI	GCATC	2 cut(s)	67, 908
MaeI	CTAG	3 cut(s)	399, 843, 1130
MaeII	ACGT	2 cut(s)	416, 1008
MaeIII	GTNAC	2 cut(s)	150, 1014
MalI	GATC	5 cut(s)	31, 104, 506, 840, 1212
MboI	GATC	5 cut(s)	29, 102, 504, 838, 1210
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	2 cut(s)	29, 504
MhlI	GDGCHC	2 cut(s)	620, 969
MluI	ACGCGT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	1064
MroXI	GAANNNNTTC	1 cut(s)	979
MseI	TTAA	5 cut(s)	54, 128, 756, 794, 930
MslI	CAYNNNNRTG	2 cut(s)	194, 1291
MspA1I	CMGCKG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	1187, 1248
MunI	CAATTG	1 cut(s)	570
Mva1269I	GAATGC	1 cut(s)	1128
MvaI	CCWGG	2 cut(s)	1187, 1248
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	5 cut(s)	185, 259, 349, 824, 1221
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	5 cut(s)	29, 102, 504, 838, 1210
NlaIII	CATG	7 cut(s)	199, 391, 658, 738, 1060, 1208, 1219
NlaIV	GGNNCC	3 cut(s)	506, 617, 618
NmuCI	GTSAC	2 cut(s)	150, 1014
NspI	RCATGY	2 cut(s)	658, 1208
NspV	TTCGAA	1 cut(s)	983
PaqCI	CACCTGC	1 cut(s)	857
PciI	ACATGT	1 cut(s)	654
PctI	GAATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	979
PfeI	GAWTC	3 cut(s)	156, 601, 1243
PflMI	CCANNNNNTGG	1 cut(s)	1046
PkrI	GCNGC	7 cut(s)	181, 184, 187, 533, 686, 865, 997
Ple19I	CGATCG	1 cut(s)	1213
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PscI	ACATGT	1 cut(s)	654
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	1185, 1246
PspFI	CCCAGC	1 cut(s)	1170
PspGI	CCWGG	2 cut(s)	1185, 1246
PspN4I	GGNNCC	3 cut(s)	506, 617, 618
PspOMI	GGGCCC	1 cut(s)	616
PspPI	GGNCC	2 cut(s)	616, 617
PstI	CTGCAG	3 cut(s)	164, 187, 868
PsuI	RGATCY	2 cut(s)	29, 504
PvuI	CGATCG	1 cut(s)	1213
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	6 cut(s)	227, 307, 462, 676, 1088, 1151
RsaNI	GTAC	6 cut(s)	226, 306, 461, 675, 1087, 1150
RseI	CAYNNNNRTG	2 cut(s)	194, 1291
SaqAI	TTAA	5 cut(s)	54, 128, 756, 794, 930
SatI	GCNGC	7 cut(s)	180, 183, 186, 532, 685, 864, 996
Sau3AI	GATC	5 cut(s)	29, 102, 504, 838, 1210
Sau96I	GGNCC	2 cut(s)	616, 617
ScaI	AGTACT	2 cut(s)	307, 462
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	1187, 1248
SduI	GDGCHC	2 cut(s)	620, 969
SfaNI	GCATC	2 cut(s)	67, 908
SfcI	CTRYAG	3 cut(s)	160, 183, 864
SfuI	TTCGAA	1 cut(s)	983
SmiMI	CAYNNNNRTG	2 cut(s)	194, 1291
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	3 cut(s)	399, 843, 1130
StyD4I	CCNGG	2 cut(s)	1185, 1246
StyI	CCWWGG	2 cut(s)	734, 1257
TaaI	ACNGT	2 cut(s)	174, 1086
TaiI	ACGT	2 cut(s)	419, 1011
TaqI	TCGA	4 cut(s)	702, 837, 983, 1071
TatI	WGTACW	5 cut(s)	225, 305, 460, 674, 1149
TfiI	GAWTC	3 cut(s)	156, 601, 1243
Tru1I	TTAA	5 cut(s)	54, 128, 756, 794, 930
Tru9I	TTAA	5 cut(s)	54, 128, 756, 794, 930
TscAI	CASTG	3 cut(s)	825, 1023, 1197
TseFI	GTSAC	2 cut(s)	150, 1014
TseI	GCWGC	7 cut(s)	179, 182, 185, 531, 684, 863, 995
Tsp45I	GTSAC	2 cut(s)	150, 1014
TspDTI	ATGAA	6 cut(s)	263, 471, 561, 623, 660, 1191
TspRI	CASTG	3 cut(s)	825, 1023, 1197
Van91I	CCANNNNNTGG	1 cut(s)	1046
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	3 cut(s)	35, 1135, 1178
XceI	RCATGY	2 cut(s)	658, 1208
XmiI	GTMKAC	2 cut(s)	855, 1162
XmnI	GAANNNNTTC	1 cut(s)	979
XspI	CTAG	3 cut(s)	399, 843, 1130
ZrmI	AGTACT	2 cut(s)	307, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.