Zein-binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G70750 |
| fragaria_vesca | FvH4_4g34051 |
| malus_domestica | MD13G1021300.v1.1 MD16G1022600.v1.1 |
| prunus_persica | Prupe.1G330400_v2.0.a1 |
| pyrus_communis | pycom16g01990 |
| rosa_chinensis | RchiOBHm_Chr4g0443551 |
| rosa_laevigata | RLG00000005917 |
| rosa_multiflora | Rmu_co8317059.1_g000001 Rmu_sc0001118.1_g000021 Rmu_sc0001118.1_g000022 |
| rosa_roxburghii | Rroxscaffold_5G00384100 |
| rosa_samantha | Rh4AG402900 Rh4AG404600 Rh4BG415600 Rh4CG430200 Rh4DG410100 Rh4DG411300 |
| rosa_wichuraiana | Rw4G034740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 134 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1966 |
| AccI | GTMKAC | 1 cut(s) | 964 |
| AccII | CGCG | 1 cut(s) | 2313 |
| AciI | CCGC | 2 cut(s) | 1445, 2311 |
| AcoI | YGGCCR | 2 cut(s) | 1348, 2566 |
| AcuI | CTGAAG | 3 cut(s) | 369, 603, 1173 |
| AcvI | CACGTG | 1 cut(s) | 866 |
| AfaI | GTAC | 3 cut(s) | 1028, 2027, 2057 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 174, 1966, 2416, 2664 |
| AflII | CTTAAG | 1 cut(s) | 2443 |
| AflIII | ACRYGT | 1 cut(s) | 315 |
| AgeI | ACCGGT | 1 cut(s) | 1108 |
| AjnI | CCWGG | 2 cut(s) | 2061, 2157 |
| Alw21I | GWGCWC | 2 cut(s) | 1229, 1540 |
| Alw26I | GTCTC | 5 cut(s) | 1456, 1748, 2614, 2785, 2934 |
| Alw44I | GTGCAC | 1 cut(s) | 1536 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 347, 934 |
| AoxI | GGCC | 5 cut(s) | 154, 888, 1348, 2169, 2566 |
| ApaLI | GTGCAC | 1 cut(s) | 1536 |
| ApeKI | GCWGC | 8 cut(s) | 5, 337, 759, 1361, 1952, 2000, 2074, 2211 |
| AsiGI | ACCGGT | 1 cut(s) | 1108 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 84, 482, 2466, 2895 |
| AspLEI | GCGC | 1 cut(s) | 1128 |
| AspS9I | GGNCC | 2 cut(s) | 2155, 2237 |
| AsuC2I | CCSGG | 1 cut(s) | 207 |
| AsuHPI | GGTGA | 5 cut(s) | 281, 602, 863, 1226, 1853 |
| AsuNHI | GCTAGC | 1 cut(s) | 2375 |
| AvaII | GGWCC | 2 cut(s) | 2155, 2237 |
| BaeGI | GKGCMC | 1 cut(s) | 1540 |
| BalI | TGGCCA | 2 cut(s) | 1350, 2568 |
| BanII | GRGCYC | 3 cut(s) | 822, 1229, 2609 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1053, 1085 |
| BbrPI | CACGTG | 1 cut(s) | 866 |
| BbsI | GAAGAC | 3 cut(s) | 720, 1044, 1551 |
| Bbv12I | GWGCWC | 2 cut(s) | 1229, 1540 |
| BbvCI | CCTCAGC | 2 cut(s) | 927, 2253 |
| BbvI | GCAGC | 7 cut(s) | 349, 746, 1373, 1964, 2012, 2086, 2223 |
| BceAI | ACGGC | 1 cut(s) | 2569 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 10, 44, 1072, 1106, 1424, 1458 |
| BciT130I | CCWGG | 2 cut(s) | 2063, 2159 |
| BclI | TGATCA | 8 cut(s) | 90, 190, 592, 856, 868, 949, 1474, 1582 |
| BcnI | CCSGG | 1 cut(s) | 207 |
| BcoDI | GTCTC | 5 cut(s) | 1456, 1748, 2614, 2785, 2934 |
| BfaI | CTAG | 4 cut(s) | 183, 299, 2376, 2405 |
| BfmI | CTRYAG | 4 cut(s) | 1365, 1734, 1944, 1985 |
| BfrI | CTTAAG | 1 cut(s) | 2443 |
| BglII | AGATCT | 1 cut(s) | 232 |
| BisI | GCNGC | 9 cut(s) | 6, 338, 760, 1362, 1953, 2001, 2075, 2212, 2311 |
| BlsI | GCNGC | 9 cut(s) | 7, 339, 761, 1363, 1954, 2002, 2076, 2213, 2312 |
| Bme1390I | CCNGG | 3 cut(s) | 207, 2063, 2159 |
| Bme18I | GGWCC | 2 cut(s) | 2155, 2237 |
| BmgT120I | GGNCC | 2 cut(s) | 2155, 2237 |
| BmiI | GGNNCC | 1 cut(s) | 1482 |
| BmrFI | CCNGG | 3 cut(s) | 207, 2063, 2159 |
| BmrI | ACTGGG | 1 cut(s) | 281 |
| BmsI | GCATC | 6 cut(s) | 562, 940, 1432, 2335, 2629, 2720 |
| BmtI | GCTAGC | 1 cut(s) | 2379 |
| BmuI | ACTGGG | 1 cut(s) | 281 |
| BpiI | GAAGAC | 3 cut(s) | 720, 1044, 1551 |
| BpmI | CTGGAG | 2 cut(s) | 956, 2381 |
| Bpu10I | CCTNAGC | 3 cut(s) | 927, 1823, 2253 |
| BpuEI | CTTGAG | 5 cut(s) | 1281, 1302, 1491, 2399, 2866 |
| BpuMI | CCSGG | 1 cut(s) | 207 |
| Bsa29I | ATCGAT | 1 cut(s) | 627 |
| BsaAI | YACGTR | 1 cut(s) | 866 |
| BsaBI | GATNNNNATC | 2 cut(s) | 89, 1395 |
| BsaI | GGTCTC | 1 cut(s) | 1456 |
| BsaJI | CCNNGG | 4 cut(s) | 380, 1042, 1233, 2295 |
| BsaWI | WCCGGW | 2 cut(s) | 1108, 2234 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 2931 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 174, 1966, 2416, 2664 |
| Bse118I | RCCGGY | 1 cut(s) | 1108 |
| Bse1I | ACTGG | 5 cut(s) | 276, 891, 972, 1077, 1283 |
| Bse3DI | GCAATG | 5 cut(s) | 1148, 1977, 2010, 2254, 2830 |
| Bse8I | GATNNNNATC | 2 cut(s) | 89, 1395 |
| BseBI | CCWGG | 2 cut(s) | 2063, 2159 |
| BseCI | ATCGAT | 1 cut(s) | 627 |
| BseDI | CCNNGG | 4 cut(s) | 380, 1042, 1233, 2295 |
| BseGI | GGATG | 8 cut(s) | 93, 390, 445, 859, 1330, 1417, 1816, 2231 |
| BseJI | GATNNNNATC | 2 cut(s) | 89, 1395 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 174, 1966, 2416, 2664 |
| BseMI | GCAATG | 5 cut(s) | 1148, 1977, 2010, 2254, 2830 |
| BseMII | CTCAG | 6 cut(s) | 612, 941, 2043, 2244, 2897, 2918 |
| BseNI | ACTGG | 5 cut(s) | 276, 891, 972, 1077, 1283 |
| BseRI | GAGGAG | 7 cut(s) | 740, 1219, 1222, 1948, 2209, 2780, 2783 |
| BseSI | GKGCMC | 1 cut(s) | 1540 |
| BseXI | GCAGC | 7 cut(s) | 349, 746, 1373, 1964, 2012, 2086, 2223 |
| Bsh1236I | CGCG | 1 cut(s) | 2313 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1113 |
| BshFI | GGCC | 5 cut(s) | 156, 890, 1350, 2171, 2568 |
| BshTI | ACCGGT | 1 cut(s) | 1108 |
| BshVI | ATCGAT | 1 cut(s) | 627 |
| BsiEI | CGRYCG | 1 cut(s) | 1113 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1229, 1540 |
| BsiSI | CCGG | 3 cut(s) | 207, 1109, 2235 |
| BslFI | GGGAC | 2 cut(s) | 1474, 1700 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 174, 1966, 2416, 2664 |
| BsmAI | GTCTC | 5 cut(s) | 1456, 1748, 2614, 2785, 2934 |
| BsmFI | GGGAC | 2 cut(s) | 1474, 1700 |
| BsmI | GAATGC | 2 cut(s) | 730, 1519 |
| BsnI | GGCC | 5 cut(s) | 156, 890, 1350, 2171, 2568 |
| Bso31I | GGTCTC | 1 cut(s) | 1456 |
| Bsp1286I | GDGCHC | 4 cut(s) | 822, 1229, 1540, 2609 |
| Bsp19I | CCATGG | 1 cut(s) | 380 |
| BspACI | CCGC | 2 cut(s) | 1445, 2311 |
| BspANI | GGCC | 5 cut(s) | 156, 890, 1350, 2171, 2568 |
| BspCNI | CTCAG | 6 cut(s) | 611, 940, 2044, 2245, 2898, 2919 |
| BspDI | ATCGAT | 1 cut(s) | 627 |
| BspFNI | CGCG | 1 cut(s) | 2313 |
| BspHI | TCATGA | 1 cut(s) | 1851 |
| BspLI | GGNNCC | 1 cut(s) | 1482 |
| BspMAI | CTGCAG | 1 cut(s) | 1948 |
| BspOI | GCTAGC | 1 cut(s) | 2379 |
| BspQI | GCTCTTC | 1 cut(s) | 2037 |
| BspTI | CTTAAG | 1 cut(s) | 2443 |
| BspTNI | GGTCTC | 1 cut(s) | 1456 |
| BsrDI | GCAATG | 5 cut(s) | 1148, 1977, 2010, 2254, 2830 |
| BsrFI | RCCGGY | 1 cut(s) | 1108 |
| BsrI | ACTGG | 5 cut(s) | 276, 891, 972, 1077, 1283 |
| BssAI | RCCGGY | 1 cut(s) | 1108 |
| BssECI | CCNNGG | 4 cut(s) | 380, 1042, 1233, 2295 |
| BssT1I | CCWWGG | 3 cut(s) | 380, 1042, 2295 |
| Bst2UI | CCWGG | 2 cut(s) | 2063, 2159 |
| Bst4CI | ACNGT | 6 cut(s) | 117, 455, 905, 1052, 1742, 1876 |
| BstAFI | CTTAAG | 1 cut(s) | 2443 |
| BstBAI | YACGTR | 1 cut(s) | 866 |
| BstC8I | GCNNGC | 3 cut(s) | 1957, 2377, 2799 |
| BstDEI | CTNAG | 8 cut(s) | 199, 598, 927, 1823, 2052, 2253, 2906, 2927 |
| BstDSI | CCRYGG | 1 cut(s) | 380 |
| BstF5I | GGATG | 8 cut(s) | 93, 390, 445, 859, 1330, 1417, 1816, 2231 |
| BstFNI | CGCG | 1 cut(s) | 2313 |
| BstHHI | GCGC | 1 cut(s) | 1128 |
| BstMAI | GTCTC | 5 cut(s) | 1456, 1748, 2614, 2785, 2934 |
| BstMCI | CGRYCG | 1 cut(s) | 1113 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 327, 1367, 1952, 2648, 2807 |
| BstNI | CCWGG | 2 cut(s) | 2063, 2159 |
| BstNSI | RCATGY | 2 cut(s) | 319, 1087 |
| BstSCI | CCNGG | 3 cut(s) | 205, 2061, 2157 |
| BstSFI | CTRYAG | 4 cut(s) | 1365, 1734, 1944, 1985 |
| BstSLI | GKGCMC | 1 cut(s) | 1540 |
| BstUI | CGCG | 1 cut(s) | 2313 |
| BstV1I | GCAGC | 7 cut(s) | 349, 746, 1373, 1964, 2012, 2086, 2223 |
| BstV2I | GAAGAC | 3 cut(s) | 720, 1044, 1551 |
| BstX2I | RGATCY | 1 cut(s) | 232 |
| BstYI | RGATCY | 1 cut(s) | 232 |
| Bsu15I | ATCGAT | 1 cut(s) | 627 |
| BsuRI | GGCC | 5 cut(s) | 156, 890, 1350, 2171, 2568 |
| BsuTUI | ATCGAT | 1 cut(s) | 627 |
| BtgI | CCRYGG | 1 cut(s) | 380 |
| BtgZI | GCGATG | 2 cut(s) | 318, 429 |
| BtsCI | GGATG | 8 cut(s) | 93, 390, 445, 859, 1330, 1417, 1816, 2231 |
| BtsI | GCAGTG | 1 cut(s) | 1953 |
| BtsIMutI | CAGTG | 5 cut(s) | 113, 1002, 1149, 1881, 1953 |
| Cac8I | GCNNGC | 3 cut(s) | 1957, 2377, 2799 |
| CaiI | CAGNNNCTG | 2 cut(s) | 347, 934 |
| CciI | TCATGA | 1 cut(s) | 1851 |
| CfoI | GCGC | 1 cut(s) | 1128 |
| Cfr10I | RCCGGY | 1 cut(s) | 1108 |
| Cfr13I | GGNCC | 2 cut(s) | 2155, 2237 |
| ClaI | ATCGAT | 1 cut(s) | 627 |
| CseI | GACGC | 1 cut(s) | 2935 |
| Csp6I | GTAC | 3 cut(s) | 1027, 2026, 2056 |
| CspAI | ACCGGT | 1 cut(s) | 1108 |
| CviQI | GTAC | 3 cut(s) | 1027, 2026, 2056 |
| DdeI | CTNAG | 8 cut(s) | 199, 598, 927, 1823, 2052, 2253, 2906, 2927 |
| DraI | TTTAAA | 1 cut(s) | 1627 |
| EaeI | YGGCCR | 2 cut(s) | 1348, 2566 |
| Ecl136II | GAGCTC | 1 cut(s) | 1227 |
| Eco130I | CCWWGG | 3 cut(s) | 380, 1042, 2295 |
| Eco24I | GRGCYC | 3 cut(s) | 822, 1229, 2609 |
| Eco31I | GGTCTC | 1 cut(s) | 1456 |
| Eco47I | GGWCC | 2 cut(s) | 2155, 2237 |
| Eco53kI | GAGCTC | 1 cut(s) | 1227 |
| Eco57I | CTGAAG | 3 cut(s) | 369, 603, 1173 |
| Eco72I | CACGTG | 1 cut(s) | 866 |
| EcoICRI | GAGCTC | 1 cut(s) | 1227 |
| EcoRI | GAATTC | 1 cut(s) | 220 |
| EcoRII | CCWGG | 2 cut(s) | 2061, 2157 |
| EcoT14I | CCWWGG | 3 cut(s) | 380, 1042, 2295 |
| EcoT22I | ATGCAT | 1 cut(s) | 1428 |
| EcoT38I | GRGCYC | 3 cut(s) | 822, 1229, 2609 |
| ErhI | CCWWGG | 3 cut(s) | 380, 1042, 2295 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2418, 2450 |
| FaqI | GGGAC | 2 cut(s) | 1474, 1700 |
| FbaI | TGATCA | 8 cut(s) | 90, 190, 592, 856, 868, 949, 1474, 1582 |
| FblI | GTMKAC | 1 cut(s) | 964 |
| Fnu4HI | GCNGC | 9 cut(s) | 6, 338, 760, 1362, 1953, 2001, 2075, 2212, 2311 |
| FokI | GGATG | 8 cut(s) | 80, 397, 452, 866, 1337, 1424, 1823, 2218 |
| FriOI | GRGCYC | 3 cut(s) | 822, 1229, 2609 |
| Fsp4HI | GCNGC | 9 cut(s) | 6, 338, 760, 1362, 1953, 2001, 2075, 2212, 2311 |
| FspBI | CTAG | 4 cut(s) | 183, 299, 2376, 2405 |
| GlaI | GCGC | 1 cut(s) | 1127 |
| GluI | GCNGC | 9 cut(s) | 6, 338, 760, 1362, 1953, 2001, 2075, 2212, 2311 |
| GsuI | CTGGAG | 2 cut(s) | 956, 2381 |
| HaeIII | GGCC | 5 cut(s) | 156, 890, 1350, 2171, 2568 |
| HapII | CCGG | 3 cut(s) | 207, 1109, 2235 |
| HgaI | GACGC | 1 cut(s) | 2935 |
| HhaI | GCGC | 1 cut(s) | 1128 |
| Hin6I | GCGC | 1 cut(s) | 1126 |
| HinP1I | GCGC | 1 cut(s) | 1126 |
| HincII | GTYRAC | 1 cut(s) | 965 |
| HindII | GTYRAC | 1 cut(s) | 965 |
| HindIII | AAGCTT | 2 cut(s) | 1401, 2016 |
| HpaII | CCGG | 3 cut(s) | 207, 1109, 2235 |
| HphI | GGTGA | 5 cut(s) | 281, 602, 863, 1226, 1853 |
| Hpy166II | GTNNAC | 5 cut(s) | 661, 796, 965, 1538, 2551 |
| Hpy8I | GTNNAC | 5 cut(s) | 661, 796, 965, 1538, 2551 |
| HpyAV | CCTTC | 9 cut(s) | 110, 522, 581, 1247, 1560, 1829, 1888, 2146, 2312 |
| HpyCH4III | ACNGT | 6 cut(s) | 117, 455, 905, 1052, 1742, 1876 |
| HpyCH4IV | ACGT | 1 cut(s) | 865 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 327, 1367, 1952, 2648, 2807 |
| HpyF3I | CTNAG | 8 cut(s) | 199, 598, 927, 1823, 2052, 2253, 2906, 2927 |
| HpySE526I | ACGT | 1 cut(s) | 865 |
| HspAI | GCGC | 1 cut(s) | 1126 |
| Ksp22I | TGATCA | 8 cut(s) | 90, 190, 592, 856, 868, 949, 1474, 1582 |
| LguI | GCTCTTC | 1 cut(s) | 2037 |
| LmnI | GCTCC | 5 cut(s) | 727, 1224, 1232, 2131, 2846 |
| Lsp1109I | GCAGC | 7 cut(s) | 349, 746, 1373, 1964, 2012, 2086, 2223 |
| LweI | GCATC | 6 cut(s) | 562, 940, 1432, 2335, 2629, 2720 |
| MaeI | CTAG | 4 cut(s) | 183, 299, 2376, 2405 |
| MaeII | ACGT | 1 cut(s) | 865 |
| MaeIII | GTNAC | 4 cut(s) | 749, 1016, 1144, 1614 |
| MflI | RGATCY | 1 cut(s) | 232 |
| MhlI | GDGCHC | 4 cut(s) | 822, 1229, 1540, 2609 |
| MlsI | TGGCCA | 2 cut(s) | 1350, 2568 |
| MluNI | TGGCCA | 2 cut(s) | 1350, 2568 |
| MlyI | GAGTC | 3 cut(s) | 1148, 1811, 1857 |
| Mox20I | TGGCCA | 2 cut(s) | 1350, 2568 |
| Mph1103I | ATGCAT | 1 cut(s) | 1428 |
| MroXI | GAANNNNTTC | 4 cut(s) | 84, 482, 2466, 2895 |
| MscI | TGGCCA | 2 cut(s) | 1350, 2568 |
| MseI | TTAA | 6 cut(s) | 159, 507, 1626, 1692, 1868, 2444 |
| MslI | CAYNNNNRTG | 5 cut(s) | 255, 639, 1578, 2784, 2898 |
| Msp20I | TGGCCA | 2 cut(s) | 1350, 2568 |
| MspA1I | CMGCKG | 1 cut(s) | 1640 |
| MspCI | CTTAAG | 1 cut(s) | 2443 |
| MspI | CCGG | 3 cut(s) | 207, 1109, 2235 |
| MspR9I | CCNGG | 3 cut(s) | 207, 2063, 2159 |
| Mva1269I | GAATGC | 2 cut(s) | 730, 1519 |
| MvaI | CCWGG | 2 cut(s) | 2063, 2159 |
| MvnI | CGCG | 1 cut(s) | 2313 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 327, 1367, 1952, 2648, 2807 |
| NciI | CCSGG | 1 cut(s) | 207 |
| NcoI | CCATGG | 1 cut(s) | 380 |
| NheI | GCTAGC | 1 cut(s) | 2375 |
| NlaIV | GGNNCC | 1 cut(s) | 1482 |
| NmuCI | GTSAC | 3 cut(s) | 749, 1016, 1144 |
| NsiI | ATGCAT | 1 cut(s) | 1428 |
| NspI | RCATGY | 2 cut(s) | 319, 1087 |
| PagI | TCATGA | 1 cut(s) | 1851 |
| PciI | ACATGT | 1 cut(s) | 315 |
| PciSI | GCTCTTC | 1 cut(s) | 2037 |
| PctI | GAATGC | 2 cut(s) | 730, 1519 |
| PdmI | GAANNNNTTC | 4 cut(s) | 84, 482, 2466, 2895 |
| PflFI | GACNNNGTC | 2 cut(s) | 2723, 2945 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1966 |
| PfoI | TCCNGGA | 1 cut(s) | 2157 |
| PinAI | ACCGGT | 1 cut(s) | 1108 |
| PkrI | GCNGC | 9 cut(s) | 7, 339, 761, 1363, 1954, 2002, 2076, 2213, 2312 |
| PleI | GAGTC | 3 cut(s) | 1147, 1810, 1856 |
| PmaCI | CACGTG | 1 cut(s) | 866 |
| PmlI | CACGTG | 1 cut(s) | 866 |
| PpsI | GAGTC | 3 cut(s) | 1147, 1810, 1856 |
| Ppu21I | YACGTR | 1 cut(s) | 866 |
| PscI | ACATGT | 1 cut(s) | 315 |
| PsiI | TTATAA | 1 cut(s) | 134 |
| Psp124BI | GAGCTC | 1 cut(s) | 1229 |
| Psp6I | CCWGG | 2 cut(s) | 2061, 2157 |
| PspCI | CACGTG | 1 cut(s) | 866 |
| PspGI | CCWGG | 2 cut(s) | 2061, 2157 |
| PspN4I | GGNNCC | 1 cut(s) | 1482 |
| PspPI | GGNCC | 2 cut(s) | 2155, 2237 |
| PstI | CTGCAG | 1 cut(s) | 1948 |
| PstNI | CAGNNNCTG | 2 cut(s) | 347, 934 |
| PsuI | RGATCY | 1 cut(s) | 232 |
| PsyI | GACNNNGTC | 2 cut(s) | 2723, 2945 |
| PvuII | CAGCTG | 1 cut(s) | 1640 |
| RsaI | GTAC | 3 cut(s) | 1028, 2027, 2057 |
| RsaNI | GTAC | 3 cut(s) | 1027, 2026, 2056 |
| RseI | CAYNNNNRTG | 5 cut(s) | 255, 639, 1578, 2784, 2898 |
| SacI | GAGCTC | 1 cut(s) | 1229 |
| SalI | GTCGAC | 1 cut(s) | 963 |
| SapI | GCTCTTC | 1 cut(s) | 2037 |
| SaqAI | TTAA | 6 cut(s) | 159, 507, 1626, 1692, 1868, 2444 |
| SatI | GCNGC | 9 cut(s) | 6, 338, 760, 1362, 1953, 2001, 2075, 2212, 2311 |
| Sau96I | GGNCC | 2 cut(s) | 2155, 2237 |
| SchI | GAGTC | 3 cut(s) | 1148, 1811, 1857 |
| ScrFI | CCNGG | 3 cut(s) | 207, 2063, 2159 |
| SduI | GDGCHC | 4 cut(s) | 822, 1229, 1540, 2609 |
| SfaNI | GCATC | 6 cut(s) | 562, 940, 1432, 2335, 2629, 2720 |
| SfcI | CTRYAG | 4 cut(s) | 1365, 1734, 1944, 1985 |
| SinI | GGWCC | 2 cut(s) | 2155, 2237 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 255, 639, 1578, 2784, 2898 |
| SmlI | CTYRAG | 6 cut(s) | 1296, 1317, 1506, 2414, 2443, 2845 |
| SmoI | CTYRAG | 6 cut(s) | 1296, 1317, 1506, 2414, 2443, 2845 |
| SsiI | CCGC | 2 cut(s) | 1445, 2311 |
| SspMI | CTAG | 4 cut(s) | 183, 299, 2376, 2405 |
| SstI | GAGCTC | 1 cut(s) | 1229 |
| StyD4I | CCNGG | 3 cut(s) | 205, 2061, 2157 |
| StyI | CCWWGG | 3 cut(s) | 380, 1042, 2295 |
| TaaI | ACNGT | 6 cut(s) | 117, 455, 905, 1052, 1742, 1876 |
| TaiI | ACGT | 1 cut(s) | 868 |
| TaqI | TCGA | 4 cut(s) | 627, 964, 1092, 2146 |
| TaqII | GACCGA | 1 cut(s) | 1225 |
| TatI | WGTACW | 1 cut(s) | 1026 |
| TauI | GCSGC | 1 cut(s) | 2313 |
| Tru1I | TTAA | 6 cut(s) | 159, 507, 1626, 1692, 1868, 2444 |
| Tru9I | TTAA | 6 cut(s) | 159, 507, 1626, 1692, 1868, 2444 |
| TscAI | CASTG | 5 cut(s) | 120, 1009, 1149, 1881, 1953 |
| TseFI | GTSAC | 3 cut(s) | 749, 1016, 1144 |
| TseI | GCWGC | 8 cut(s) | 5, 337, 759, 1361, 1952, 2000, 2074, 2211 |
| Tsp45I | GTSAC | 3 cut(s) | 749, 1016, 1144 |
| TspGWI | ACGGA | 2 cut(s) | 1906, 2912 |
| TspRI | CASTG | 5 cut(s) | 120, 1009, 1149, 1881, 1953 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2723, 2945 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1966 |
| Vha464I | CTTAAG | 1 cut(s) | 2443 |
| VneI | GTGCAC | 1 cut(s) | 1536 |
| VpaK11BI | GGWCC | 2 cut(s) | 2155, 2237 |
| XbaI | TCTAGA | 1 cut(s) | 2404 |
| XceI | RCATGY | 2 cut(s) | 319, 1087 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1111, 1963 |
| XmiI | GTMKAC | 1 cut(s) | 964 |
| XmnI | GAANNNNTTC | 4 cut(s) | 84, 482, 2466, 2895 |
| XspI | CTAG | 4 cut(s) | 183, 299, 2376, 2405 |
| Zsp2I | ATGCAT | 1 cut(s) | 1428 |