Rmu_sc0001118.1_g000022

Zein-binding

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001118.1
Physical Location & Seq
Forward (+)
136587 .. 139067
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001118.1_g000022.1.cds

Sequence Viewer

Length: 2187 bp
atgcatttcgagacacaagccaaaccggttgttgagtgttggcagagttcagatgagattgtggaattactttcatcccatgagattaaagaggagagcaaagtttcagttcttgactcaaaggatttggatttcgatatgcattttgagacgcaagccaaaccggttgttgagtgttgtcccagttcagatgagattgtggaattactttcatcccatgagattaaagaggagagcaaagtttcagttcttgactcaaaggatttggggcagaatggagaagaagttgaagaaaatgagcaagctgaagatactactagtactcgagcaacaccagcctcttgtcatgaggatgacagtcgatcaaatgctgctgacatagtaggaagagacattgattcagatgttcatcaagatgagattgtggtactttcatcccatgagattaaagaggagaacaaagtttcagttcttgactcaaaggatttggggcagaatggagaagaagttgaagaaaatgagcaagctgaagatactactagtactcgagcaacaccatcctcttgtcatgaggatgacagtcaatcaaatgctgctgacatagtaggaagagacattgattcagatgttcatcaagcaacaactgaggatgatgacatccatattcggaacgatgagattgatacagaggtctcaatagggactgatattcctgatcatgatatattcaatgaggatattcaatcagctcatgaacttctacattcttatcccggtgtgcaagaagatccttctacaagttctcccaatgctgaaattgatgataatcatggtgctaagcaagaagaagagtttctagaattcaagaccttatcagttgaaacaagtgagaaagaacaaaatagttatttctcattaggttcagaacttaatgagattgaggaagagaaggttcttcctgatacaccaacttctatagacaatttccatcagttgtataatagaatgctactaactgagagaagggaatcaggaacagaagcatcattggatggaagtgtagtgagcgacattgaatgtggtgatggagtcctgactatggagaagctgaaatcggtgttgagagctgaacggaaagctttaaatagagtatattcagaacttgaagaagagaggagtgcttctgcaatagcagccaaccagacaatggcaatgataaataggctacaagaagaaaaggcagcaatgcagatggaagctttgcagtaccaaaggatgatggatgagcagtctgagtacgaccaggaagctatgcagctcttaaacgagctcatggtaaagagggaaaaggaaaagcaagaacttgaaaaggagctagaaatatgtcgaaagaaggtccaagattatgaggccaaagagaaaatgatgattttgaggagaatgaaagagggctgcacaagaagtaggacttcatctggtccttgtagcaatgctgaggatagtgatggactttctattgatttgaatcatgaagtgaaggaagaagataacctctcgggacatgaagagagtagcaatcaaaacacaccaagggatgcggtgttatatttagaagaatctttggctagctttgaggaagagaagttatccattctagaccaactcaaggaattggaagagaagcttttgaccttgaatgacgaagaggaagaagaacattacgaggatataaaaccaattgatcatttattttcagagaatgggaatggctaccatgagaatggtgatgttggcggtgaagaaaatggcattgcaaatggccactccaaagaaatgaatggaacacatcatcaagatagaaaaattatgggatcaattaaggcaaagagacttcttccacttttcaatgaagctgaagatgaagacgaggagttgaatggagatgtagaaggttatgattctgttgcatcacaagattacaagaaactcgctattgaagaggaggttgcgcatgtctatgagaggctacaagcacttgaagcggatagagagtttctaaagcactgtattagctccttaaggaaaggtgacaagggattagatcttctccaagaaattttgcaacatcttcgtgacctgagaagtgtggaaacccgtctaaggaattcaggagagggtatcctataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

728

Amino Acids

82.34

Weight (kDa)

4.38

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011757)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2010
AccB7I CCANNNNNTGG 1 cut(s) 1207
AciI CCGC 3 cut(s) 1598, 1794, 2042
AclWI GGATC 2 cut(s) 782, 1879
AcoI YGGCCR 1 cut(s) 1819
AcsI RAATTY 3 cut(s) 860, 2115, 2164
AcuI CTGAAG 3 cut(s) 327, 549, 1935
AfaI GTAC 5 cut(s) 322, 429, 544, 1268, 1298
AfiI CCNNNNNNNGG 4 cut(s) 1099, 1207, 1666, 2160
AflII CTTAAG 1 cut(s) 2077
AgeI ACCGGT 2 cut(s) 25, 163
AhlI ACTAGT 2 cut(s) 317, 539
AjnI CCWGG 1 cut(s) 1302
Alw21I GWGCWC 1 cut(s) 1332
Alw26I GTCTC 6 cut(s) 5, 143, 384, 606, 697, 1882
AlwI GGATC 2 cut(s) 782, 1879
Ama87I CYCGRG 3 cut(s) 324, 546, 1555
AoxI GGCC 2 cut(s) 1410, 1819
ApeKI GCWGC 6 cut(s) 371, 593, 1193, 1241, 1315, 1452
ApoI RAATTY 3 cut(s) 860, 2115, 2164
AsiGI ACCGGT 2 cut(s) 25, 163
Asp700I GAANNNNTTC 1 cut(s) 852
AspLEI GCGC 1 cut(s) 2011
AspS9I GGNCC 2 cut(s) 1396, 1478
AsuC2I CCSGG 1 cut(s) 774
AsuHPI GGTGA 4 cut(s) 1094, 1796, 1808, 2099
AsuNHI GCTAGC 1 cut(s) 1625
AvaI CYCGRG 3 cut(s) 324, 546, 1555
AvaII GGWCC 2 cut(s) 1396, 1478
BaeI ACNNNNGTAYC 2 cut(s) 675, 708
BalI TGGCCA 1 cut(s) 1821
BanII GRGCYC 1 cut(s) 1332
BbsI GAAGAC 1 cut(s) 1929
Bbv12I GWGCWC 1 cut(s) 1332
BbvCI CCTCAGC 1 cut(s) 1494
BbvI GCAGC 6 cut(s) 358, 580, 1205, 1253, 1327, 1439
BccI CCATC 7 cut(s) 565, 996, 1046, 1079, 1246, 1273, 1499
BcgI CGANNNNNNTGC 2 cut(s) 2111, 2145
BciT130I CCWGG 1 cut(s) 1304
BclI TGATCA 2 cut(s) 715, 1741
BcnI CCSGG 1 cut(s) 774
BcoDI GTCTC 6 cut(s) 5, 143, 384, 606, 697, 1882
BcuI ACTAGT 2 cut(s) 317, 539
BfaI CTAG 6 cut(s) 318, 540, 857, 1376, 1626, 1655
BfmI CTRYAG 1 cut(s) 975
BfrI CTTAAG 1 cut(s) 2077
BglII AGATCT 1 cut(s) 2101
BisI GCNGC 6 cut(s) 372, 594, 1194, 1242, 1316, 1453
BlpI GCTNAGC 1 cut(s) 837
BlsI GCNGC 6 cut(s) 373, 595, 1195, 1243, 1317, 1454
BmcAI AGTACT 2 cut(s) 322, 544
Bme1390I CCNGG 2 cut(s) 774, 1304
Bme18I GGWCC 2 cut(s) 1396, 1478
BmeT110I CYCGRG 3 cut(s) 324, 546, 1555
BmgT120I GGNCC 2 cut(s) 1396, 1478
BmrFI CCNGG 2 cut(s) 774, 1304
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 3 cut(s) 1052, 1585, 1976
BmtI GCTAGC 1 cut(s) 1629
BmuI ACTGGG 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 1929
Bpu10I CCTNAGC 1 cut(s) 1494
Bpu1102I GCTNAGC 1 cut(s) 837
BpuEI CTTGAG 1 cut(s) 1649
BpuMI CCSGG 1 cut(s) 774
BsaBI GATNNNNATC 4 cut(s) 408, 630, 825, 1524
BsaI GGTCTC 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 1589
BsaWI WCCGGW 2 cut(s) 25, 163
BsaXI ACNNNNNCTCC 6 cut(s) 270, 300, 492, 522, 787, 817
Bsc4I CCNNNNNNNGG 4 cut(s) 1099, 1207, 1666, 2160
Bse118I RCCGGY 2 cut(s) 25, 163
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 4 cut(s) 1218, 1251, 1495, 1809
Bse8I GATNNNNATC 4 cut(s) 408, 630, 825, 1524
BseBI CCWGG 1 cut(s) 1304
BseDI CCNNGG 1 cut(s) 1589
BseJI GATNNNNATC 4 cut(s) 408, 630, 825, 1524
BseLI CCNNNNNNNGG 4 cut(s) 1099, 1207, 1666, 2160
BseMI GCAATG 4 cut(s) 1218, 1251, 1495, 1809
BseMII CTCAG 5 cut(s) 636, 1008, 1284, 1485, 2129
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 7 cut(s) 107, 245, 467, 1189, 1450, 1943, 2015
BseXI GCAGC 6 cut(s) 358, 580, 1205, 1253, 1327, 1439
BsgI GTGCAG 1 cut(s) 1438
BshFI GGCC 2 cut(s) 1412, 1821
BshTI ACCGGT 2 cut(s) 25, 163
BsiHKAI GWGCWC 1 cut(s) 1332
BsiHKCI CYCGRG 3 cut(s) 324, 546, 1555
BsiSI CCGG 3 cut(s) 26, 164, 774
BslFI GGGAC 3 cut(s) 165, 715, 1572
BslI CCNNNNNNNGG 4 cut(s) 1099, 1207, 1666, 2160
BsmAI GTCTC 6 cut(s) 5, 143, 384, 606, 697, 1882
BsmBI CGTCTC 1 cut(s) 143
BsmFI GGGAC 3 cut(s) 165, 715, 1572
BsmI GAATGC 1 cut(s) 1011
BsnI GGCC 2 cut(s) 1412, 1821
Bso31I GGTCTC 1 cut(s) 697
BsoBI CYCGRG 3 cut(s) 324, 546, 1555
Bsp1286I GDGCHC 1 cut(s) 1332
Bsp143I GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
Bsp1720I GCTNAGC 1 cut(s) 837
BspACI CCGC 3 cut(s) 1598, 1794, 2042
BspANI GGCC 2 cut(s) 1412, 1821
BspCNI CTCAG 5 cut(s) 637, 1009, 1285, 1486, 2130
BspHI TCATGA 5 cut(s) 346, 568, 718, 751, 1528
BspOI GCTAGC 1 cut(s) 1629
BspPI GGATC 2 cut(s) 782, 1879
BspTI CTTAAG 1 cut(s) 2077
BspTNI GGTCTC 1 cut(s) 697
BsrDI GCAATG 4 cut(s) 1218, 1251, 1495, 1809
BsrFI RCCGGY 2 cut(s) 25, 163
BsrI ACTGG 1 cut(s) 183
BssAI RCCGGY 2 cut(s) 25, 163
BssECI CCNNGG 1 cut(s) 1589
BssMI GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
BssT1I CCWWGG 1 cut(s) 1589
Bst2UI CCWGG 1 cut(s) 1304
Bst4CI ACNGT 3 cut(s) 359, 581, 2066
BstAFI CTTAAG 1 cut(s) 2077
BstC8I GCNNGC 4 cut(s) 156, 303, 525, 1627
BstDEI CTNAG 7 cut(s) 645, 837, 1017, 1293, 1494, 2138, 2159
BstHHI GCGC 1 cut(s) 2011
BstKTI GATC 6 cut(s) 365, 718, 790, 1744, 1874, 2104
BstMAI GTCTC 6 cut(s) 5, 143, 384, 606, 697, 1882
BstMBI GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
BstMWI GCNNNNNNNGC 3 cut(s) 335, 1193, 2039
BstNI CCWGG 1 cut(s) 1304
BstNSI RCATGY 1 cut(s) 2015
BstSCI CCNGG 2 cut(s) 772, 1302
BstSFI CTRYAG 1 cut(s) 975
BstV1I GCAGC 6 cut(s) 358, 580, 1205, 1253, 1327, 1439
BstV2I GAAGAC 1 cut(s) 1929
BstX2I RGATCY 2 cut(s) 787, 2101
BstXI CCANNNNNNTGG 1 cut(s) 1781
BstYI RGATCY 2 cut(s) 787, 2101
BsuRI GGCC 2 cut(s) 1412, 1821
BtsIMutI CAGTG 1 cut(s) 2062
Cac8I GCNNGC 4 cut(s) 156, 303, 525, 1627
CciI TCATGA 5 cut(s) 346, 568, 718, 751, 1528
CfoI GCGC 1 cut(s) 2011
Cfr10I RCCGGY 2 cut(s) 25, 163
Cfr13I GGNCC 2 cut(s) 1396, 1478
CseI GACGC 1 cut(s) 160
Csp6I GTAC 5 cut(s) 321, 428, 543, 1267, 1297
CspAI ACCGGT 2 cut(s) 25, 163
CviQI GTAC 5 cut(s) 321, 428, 543, 1267, 1297
DdeI CTNAG 7 cut(s) 645, 837, 1017, 1293, 1494, 2138, 2159
DpnI GATC 6 cut(s) 364, 717, 789, 1743, 1873, 2103
DpnII GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
DraI TTTAAA 1 cut(s) 1143
EaeI YGGCCR 1 cut(s) 1819
Ecl136II GAGCTC 1 cut(s) 1330
Eco130I CCWWGG 1 cut(s) 1589
Eco24I GRGCYC 1 cut(s) 1332
Eco31I GGTCTC 1 cut(s) 697
Eco47I GGWCC 2 cut(s) 1396, 1478
Eco53kI GAGCTC 1 cut(s) 1330
Eco57I CTGAAG 3 cut(s) 327, 549, 1935
Eco88I CYCGRG 3 cut(s) 324, 546, 1555
EcoICRI GAGCTC 1 cut(s) 1330
EcoRI GAATTC 2 cut(s) 860, 2164
EcoRII CCWGG 1 cut(s) 1302
EcoT14I CCWWGG 1 cut(s) 1589
EcoT22I ATGCAT 2 cut(s) 6, 144
EcoT38I GRGCYC 1 cut(s) 1332
ErhI CCWWGG 1 cut(s) 1589
Esp3I CGTCTC 1 cut(s) 143
FalI AAGNNNNNCTT 4 cut(s) 1453, 1485, 1668, 1700
FaqI GGGAC 3 cut(s) 165, 715, 1572
FbaI TGATCA 2 cut(s) 715, 1741
Fnu4HI GCNGC 6 cut(s) 372, 594, 1194, 1242, 1316, 1453
FriOI GRGCYC 1 cut(s) 1332
Fsp4HI GCNGC 6 cut(s) 372, 594, 1194, 1242, 1316, 1453
FspBI CTAG 6 cut(s) 318, 540, 857, 1376, 1626, 1655
FspI TGCGCA 1 cut(s) 2010
GlaI GCGC 1 cut(s) 2010
GluI GCNGC 6 cut(s) 372, 594, 1194, 1242, 1316, 1453
HaeIII GGCC 2 cut(s) 1412, 1821
HapII CCGG 3 cut(s) 26, 164, 774
HgaI GACGC 1 cut(s) 160
HhaI GCGC 1 cut(s) 2011
Hin6I GCGC 1 cut(s) 2009
HinP1I GCGC 1 cut(s) 2009
HindIII AAGCTT 3 cut(s) 1137, 1257, 1682
HpaII CCGG 3 cut(s) 26, 164, 774
HphI GGTGA 4 cut(s) 1094, 1796, 1808, 2099
Hpy188I TCNGA 9 cut(s) 52, 190, 403, 625, 669, 925, 1159, 1294, 1756
HpyAV CCTTC 6 cut(s) 801, 943, 1017, 1387, 1531, 1943
HpyCH4III ACNGT 3 cut(s) 359, 581, 2066
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 1193, 2039
HpyF3I CTNAG 7 cut(s) 645, 837, 1017, 1293, 1494, 2138, 2159
HspAI GCGC 1 cut(s) 2009
Ksp22I TGATCA 2 cut(s) 715, 1741
Kzo9I GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
LmnI GCTCC 2 cut(s) 1372, 2078
Lsp1109I GCAGC 6 cut(s) 358, 580, 1205, 1253, 1327, 1439
LweI GCATC 3 cut(s) 1052, 1585, 1976
MaeI CTAG 6 cut(s) 318, 540, 857, 1376, 1626, 1655
MaeIII GTNAC 2 cut(s) 2087, 2132
MalI GATC 6 cut(s) 364, 717, 789, 1743, 1873, 2103
MboI GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
MfeI CAATTG 1 cut(s) 1737
MflI RGATCY 2 cut(s) 787, 2101
MhlI GDGCHC 1 cut(s) 1332
MlsI TGGCCA 1 cut(s) 1821
MluNI TGGCCA 1 cut(s) 1821
MlyI GAGTC 4 cut(s) 110, 248, 470, 1098
Mox20I TGGCCA 1 cut(s) 1821
Mph1103I ATGCAT 2 cut(s) 6, 144
MroXI GAANNNNTTC 1 cut(s) 852
MscI TGGCCA 1 cut(s) 1821
MseI TTAA 8 cut(s) 87, 225, 447, 930, 1142, 1322, 1878, 2078
MslI CAYNNNNRTG 6 cut(s) 351, 414, 573, 1779, 2016, 2130
Msp20I TGGCCA 1 cut(s) 1821
MspCI CTTAAG 1 cut(s) 2077
MspI CCGG 3 cut(s) 26, 164, 774
MspR9I CCNGG 2 cut(s) 774, 1304
MunI CAATTG 1 cut(s) 1737
Mva1269I GAATGC 1 cut(s) 1011
MvaI CCWGG 1 cut(s) 1304
MwoI GCNNNNNNNGC 3 cut(s) 335, 1193, 2039
NciI CCSGG 1 cut(s) 774
NdeII GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
NheI GCTAGC 1 cut(s) 1625
NmuCI GTSAC 2 cut(s) 2087, 2132
NsbI TGCGCA 1 cut(s) 2010
NsiI ATGCAT 2 cut(s) 6, 144
NspI RCATGY 1 cut(s) 2015
PaeR7I CTCGAG 2 cut(s) 324, 546
PagI TCATGA 5 cut(s) 346, 568, 718, 751, 1528
PctI GAATGC 1 cut(s) 1011
PdmI GAANNNNTTC 1 cut(s) 852
PfeI GAWTC 6 cut(s) 398, 620, 1028, 1525, 1616, 1958
PflMI CCANNNNNTGG 1 cut(s) 1207
PinAI ACCGGT 2 cut(s) 25, 163
PkrI GCNGC 6 cut(s) 373, 595, 1195, 1243, 1317, 1454
PleI GAGTC 4 cut(s) 110, 248, 470, 1097
PpsI GAGTC 4 cut(s) 110, 248, 470, 1097
Psp124BI GAGCTC 1 cut(s) 1332
Psp6I CCWGG 1 cut(s) 1302
PspGI CCWGG 1 cut(s) 1302
PspPI GGNCC 2 cut(s) 1396, 1478
PspXI VCTCGAGB 2 cut(s) 324, 546
PsuI RGATCY 2 cut(s) 787, 2101
RsaI GTAC 5 cut(s) 322, 429, 544, 1268, 1298
RsaNI GTAC 5 cut(s) 321, 428, 543, 1267, 1297
RseI CAYNNNNRTG 6 cut(s) 351, 414, 573, 1779, 2016, 2130
SacI GAGCTC 1 cut(s) 1332
SaqAI TTAA 8 cut(s) 87, 225, 447, 930, 1142, 1322, 1878, 2078
SatI GCNGC 6 cut(s) 372, 594, 1194, 1242, 1316, 1453
Sau3AI GATC 6 cut(s) 362, 715, 787, 1741, 1871, 2101
Sau96I GGNCC 2 cut(s) 1396, 1478
ScaI AGTACT 2 cut(s) 322, 544
SchI GAGTC 4 cut(s) 110, 248, 470, 1098
ScrFI CCNGG 2 cut(s) 774, 1304
SduI GDGCHC 1 cut(s) 1332
SfaNI GCATC 3 cut(s) 1052, 1585, 1976
SfcI CTRYAG 1 cut(s) 975
Sfr274I CTCGAG 2 cut(s) 324, 546
SinI GGWCC 2 cut(s) 1396, 1478
SlaI CTCGAG 2 cut(s) 324, 546
SmiMI CAYNNNNRTG 6 cut(s) 351, 414, 573, 1779, 2016, 2130
SmlI CTYRAG 4 cut(s) 324, 546, 1664, 2077
SmoI CTYRAG 4 cut(s) 324, 546, 1664, 2077
SpeI ACTAGT 2 cut(s) 317, 539
SsiI CCGC 3 cut(s) 1598, 1794, 2042
SspMI CTAG 6 cut(s) 318, 540, 857, 1376, 1626, 1655
SstI GAGCTC 1 cut(s) 1332
StyD4I CCNGG 2 cut(s) 772, 1302
StyI CCWWGG 1 cut(s) 1589
TaaI ACNGT 3 cut(s) 359, 581, 2066
TaqI TCGA 6 cut(s) 9, 135, 325, 361, 547, 1387
TatI WGTACW 2 cut(s) 320, 542
TfiI GAWTC 6 cut(s) 398, 620, 1028, 1525, 1616, 1958
Tru1I TTAA 8 cut(s) 87, 225, 447, 930, 1142, 1322, 1878, 2078
Tru9I TTAA 8 cut(s) 87, 225, 447, 930, 1142, 1322, 1878, 2078
TscAI CASTG 1 cut(s) 2069
TseFI GTSAC 2 cut(s) 2087, 2132
TseI GCWGC 6 cut(s) 371, 593, 1193, 1241, 1315, 1452
Tsp45I GTSAC 2 cut(s) 2087, 2132
TspGWI ACGGA 1 cut(s) 1147
TspRI CASTG 1 cut(s) 2069
Van91I CCANNNNNTGG 1 cut(s) 1207
Vha464I CTTAAG 1 cut(s) 2077
VpaK11BI GGWCC 2 cut(s) 1396, 1478
XapI RAATTY 3 cut(s) 860, 2115, 2164
XbaI TCTAGA 2 cut(s) 856, 1654
XceI RCATGY 1 cut(s) 2015
XcmI CCANNNNNNNNNTGG 1 cut(s) 1204
XhoI CTCGAG 2 cut(s) 324, 546
XmnI GAANNNNTTC 1 cut(s) 852
XspI CTAG 6 cut(s) 318, 540, 857, 1376, 1626, 1655
ZrmI AGTACT 2 cut(s) 322, 544
Zsp2I ATGCAT 2 cut(s) 6, 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.