Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8317059.1

Orthogroup ID

OG0011757

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 906

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8317059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 905 bp

atggctgccaacaagtttgccaccatgttacacagaaacaccaacaaactcactctgattctcatctacgcaatcctcgaatgggttctgatcctcctcctccttctcaactccctcttctcttatctgatcgtcaagttcgccgattactttggcctcaaacgaccctgcctctggtgttctaggctcgatcacatcttcgagcccggaaacaagagccacagttcttacagagatcttgtgtgtgaagaacacgccaatgaaatagccaaacttgggttttgctcgaatcaccagaaactggctgagtctcaagatatgtgtgaggattgctcatcgcaggaatattctcaagaatggtctaacaagtatgctttctttccgtggatgaagcaaattgggatgattcaaggcggcgatgatgataaggagattaacgataaggaatgttcttgctgcggtgtgagcttgagcaacaagctgtaccctccttgtattctgctcaagccttcttggggggttttggattacgctcagaaacccattttgagttcagatgtaggggttgatgctcagactgaggaaggtgatcagtcggatcaaagtggatcggattatgtggcagatcaaaatggacatgacgagggtgttgttgttgttgttgttcaaggaaataggggagagaattcggtttcggtttcggatgttgatggatgttgtggacaaagagactatgatgcagaggagaagaataattcagcatgttgttctgtttgtgactatgtctgcaaggaaacggaaactgaggccaatcaaattgaagacgaggctaatatgaatgtctccatggacgatggtgatgatggtcgagctcaaattcaggccagttgtgatgagaataagtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

302

Amino Acids

33.67

Weight (kDa)

4.39

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70750
fragaria_vesca	FvH4_4g34051
malus_domestica	MD13G1021300.v1.1 MD16G1022600.v1.1
prunus_persica	Prupe.1G330400_v2.0.a1
pyrus_communis	pycom16g01990
rosa_chinensis	RchiOBHm_Chr4g0443551
rosa_laevigata	RLG00000005917
rosa_multiflora	Rmu_co8317059.1_g000001 Rmu_sc0001118.1_g000021 Rmu_sc0001118.1_g000022
rosa_roxburghii	Rroxscaffold_5G00384100
rosa_samantha	Rh4AG402900 Rh4AG404600 Rh4BG415600 Rh4CG430200 Rh4DG410100 Rh4DG411300
rosa_wichuraiana	Rw4G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	301
AciI	CCGC	2 cut(s)	414, 459
AclWI	GGATC	3 cut(s)	85, 606, 616
AcsI	RAATTY	2 cut(s)	685, 876
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	5 cut(s)	82, 174, 276, 301, 515
AgsI	TTSAA	3 cut(s)	410, 668, 821
AluBI	AGCT	3 cut(s)	468, 481, 872
AluI	AGCT	3 cut(s)	468, 481, 872
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	3 cut(s)	315, 723, 847
AlwI	GGATC	3 cut(s)	85, 606, 616
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	3 cut(s)	154, 807, 882
ApeKI	GCWGC	2 cut(s)	5, 456
ApoI	RAATTY	2 cut(s)	685, 876
Asp700I	GAANNNNTTC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	3 cut(s)	284, 599, 869
BanII	GRGCYC	2 cut(s)	207, 874
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	874
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	704, 848, 857
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	3 cut(s)	315, 723, 847
BfaI	CTAG	1 cut(s)	183
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	3 cut(s)	6, 415, 457
BlsI	GCNGC	3 cut(s)	7, 416, 458
Bme1390I	CCNGG	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	2 cut(s)	559, 727
BpiI	GAAGAC	1 cut(s)	828
BplI	GAGNNNNNCTC	2 cut(s)	317, 349
BpuEI	CTTGAG	4 cut(s)	297, 336, 488, 490
BpuMI	CCSGG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	383, 846
Bsc4I	CCNNNNNNNGG	5 cut(s)	82, 174, 276, 301, 515
Bse1I	ACTGG	2 cut(s)	306, 885
Bse8I	GATNNNNATC	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	383, 846
BseGI	GGATG	4 cut(s)	393, 408, 709, 719
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	5 cut(s)	82, 174, 276, 301, 515
BseMII	CTCAG	5 cut(s)	297, 548, 570, 587, 795
BseNI	ACTGG	2 cut(s)	306, 885
BseRI	GAGGAG	3 cut(s)	86, 89, 758
BseXI	GCAGC	1 cut(s)	443
BshFI	GGCC	3 cut(s)	156, 809, 884
BsiHKAI	GWGCWC	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	5 cut(s)	82, 174, 276, 301, 515
BsmAI	GTCTC	3 cut(s)	315, 723, 847
BsnI	GGCC	3 cut(s)	156, 809, 884
Bsp1286I	GDGCHC	2 cut(s)	207, 874
Bsp143I	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	2 cut(s)	414, 459
BspANI	GGCC	3 cut(s)	156, 809, 884
BspCNI	CTCAG	5 cut(s)	298, 547, 571, 586, 796
BspPI	GGATC	3 cut(s)	85, 606, 616
BsrI	ACTGG	2 cut(s)	306, 885
BssECI	CCNNGG	2 cut(s)	383, 846
BssMI	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
BssT1I	CCWWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	122
BstDEI	CTNAG	5 cut(s)	306, 534, 573, 579, 804
BstDSI	CCRYGG	2 cut(s)	383, 846
BstF5I	GGATG	4 cut(s)	393, 408, 709, 719
BstKTI	GATC	8 cut(s)	93, 132, 193, 238, 592, 601, 611, 628
BstMAI	GTCTC	3 cut(s)	315, 723, 847
BstMBI	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	765
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	1 cut(s)	828
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	156, 809, 884
BtgI	CCRYGG	2 cut(s)	383, 846
BtgZI	GCGATG	2 cut(s)	321, 432
BtsCI	GGATG	4 cut(s)	393, 408, 709, 719
CaiI	CAGNNNCTG	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	4 cut(s)	25, 638, 762, 847
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	5 cut(s)	306, 534, 573, 579, 804
DpnI	GATC	8 cut(s)	92, 131, 192, 237, 591, 600, 610, 627
DpnII	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	872
Eco130I	CCWWGG	1 cut(s)	846
Eco24I	GRGCYC	2 cut(s)	207, 874
Eco53kI	GAGCTC	1 cut(s)	872
EcoICRI	GAGCTC	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	846
EcoT38I	GRGCYC	2 cut(s)	207, 874
ErhI	CCWWGG	1 cut(s)	846
FaeI	CATG	4 cut(s)	28, 641, 765, 850
FatI	CATG	4 cut(s)	24, 637, 761, 846
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	6, 415, 457
FokI	GGATG	4 cut(s)	400, 415, 716, 726
FriOI	GRGCYC	2 cut(s)	207, 874
Fsp4HI	GCNGC	3 cut(s)	6, 415, 457
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	3 cut(s)	6, 415, 457
HaeIII	GGCC	3 cut(s)	156, 809, 884
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	4 cut(s)	28, 641, 765, 850
HinfI	GANTC	4 cut(s)	58, 289, 308, 406
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	3 cut(s)	284, 599, 869
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	9 cut(s)	57, 90, 129, 537, 556, 576, 598, 613, 703
Hpy188III	TCNNGA	2 cut(s)	314, 353
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	113, 519, 578
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	740, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	465
HpyF3I	CTNAG	5 cut(s)	306, 534, 573, 579, 804
Hsp92II	CATG	4 cut(s)	28, 641, 765, 850
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
LpnPI	CCDG	8 cut(s)	160, 181, 220, 287, 308, 326, 866, 898
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	2 cut(s)	559, 727
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	27, 776
MalI	GATC	8 cut(s)	92, 131, 192, 237, 591, 600, 610, 627
MboI	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
MboII	GAAGA	5 cut(s)	109, 190, 260, 760, 833
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	207, 874
MluCI	AATT	5 cut(s)	396, 685, 754, 816, 876
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	465
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
NlaIII	CATG	4 cut(s)	28, 641, 765, 850
NmuCI	GTSAC	1 cut(s)	776
NspI	RCATGY	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	58, 289, 406
PflFI	GACNNNGTC	1 cut(s)	782
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	3 cut(s)	7, 416, 458
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	874
PstNI	CAGNNNCTG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	782
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
RseI	CAYNNNNRTG	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	874
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	3 cut(s)	6, 415, 457
Sau3AI	GATC	8 cut(s)	90, 129, 190, 235, 589, 598, 608, 625
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	207, 874
SetI	ASST	4 cut(s)	470, 483, 589, 874
SfaNI	GCATC	2 cut(s)	559, 727
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	4 cut(s)	312, 351, 469, 503
SmoI	CTYRAG	4 cut(s)	312, 351, 469, 503
Sse9I	AATT	5 cut(s)	396, 685, 754, 816, 876
SsiI	CCGC	2 cut(s)	414, 459
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	874
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	1 cut(s)	846
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	5 cut(s)	78, 189, 201, 287, 868
TasI	AATT	5 cut(s)	396, 685, 754, 816, 876
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	58, 289, 406
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	2 cut(s)	5, 456
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	3 cut(s)	276, 404, 851
TspGWI	ACGGA	2 cut(s)	372, 812
Tth111I	GACNNNGTC	1 cut(s)	782
Van91I	CCANNNNNTGG	1 cut(s)	301
XapI	RAATTY	2 cut(s)	685, 876
XceI	RCATGY	1 cut(s)	765
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.