Prupe.1G350600_v2.0.a1

recombinational repair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003214
Physical Location & Seq
Reverse (-)
32639471 .. 32649007
9537 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G350600.2

Sequence Viewer

Length: 3171 bp
ATGTTTGGTCATGCGGATTATCTTCATGATTTTTTTTATTCAACTTGGAGATATTGCTCCTTTTTAAGTGGATTGGTTGGCAGTTTAATCTCAAAGAATTGCGCGGATGTGATTGGCTTACCTTCAAGGAACTCTCTTTCTAAATTGGTTGAAGAAAGGGAAACTCAACTTTCAACCTTCATGGATCAAAGGGAGTTTATAGATATTAGTTCATCTGATAGTGAAACAGAGAGGGAAGAAAGGGAATCTGTCAACAGTAGAATTCTTCCACCTTGGGCATCTGGAACTGGCTCAAATCCGAGTAAAGATTATGCTGGGCAGTCTAGAAAGGTGCCTTCTCCTAGAAGAGCATATGCTTCTAATGGAAGCTCTCCTAATTTTAATCACCATGCACAGGTGAAACAGAAGTTTCATCCCAGTTCAAGCGATGACATAAGAACCTCAAGTCGACAGGCTGCTCGAGCACATTTTGGAAATTTGGAACAGCCTCAGGATTCACGAATCGCTAATATTTCTGTTAAGGACTATGAGAAAATCTCATCCCAACGGGATTTGAAGAGGACCCTTCCCCCATCTCTGCAGAATGCAAGAGATAACATGGCCCACAGTCAGTTTGGTGATACTTATGGAACCAATGGCAAGGGATTTATGAGAGACCATTCTACCAGGGGCAATGCCAATGAATTTGTTAGGCCTGAGAGCAGTGGGAGTAGGGTCCTGCCCCCCACTTTCATGCATGGAAAGTCATTTTCTACTTCACAGTTTGCTAGTTCAAGTGACCCCCCATACCATCCTGGCATAGGTGAAGAAAGGGTCACTGATAGTGATGAGAGACTGATATATCAAGCAGCACTAGAGGATCTCAATCAACCAAAAGTTGAAGCTACTCTACCTGATGGTCTTTTGTCGGTCCCTCTTCTACGACATCAGAAAATTGCTTTGGCATGGATGCTTCAAAAGGAAACTAGAAGTCTGCATTGTCTAGGTGGAATCTTAGCAGATGATCAGGGCCTTGGTAAGACTATCTCAATGATTGCCCTTATACAAATGCAGAGGTTTTTGGATTCACAATCAAAATCTAAAGATTTAGGCAATCATAAAACTGAAGCTTTAAATTTGGATGATGATGAGGACAATGGCAGTGGTGGTTTAGATACAGTCAACAAGACTGAGGAATCTGATGATATTCGATCAACTCCAGAAGTTAGTACATCTGCACGGTCATTCAAAAAGCAGAGGCCAGCAGCAGGTACATTGGTTGTGTGTCCAGCAAGTGTTCTTCGACAGTGGGCTAGGGAGCTGGATGATAAGGTCGCAGAGGAAGCAAAGCTGCGTGTCCTTATTTATCATGGAGGCAGCAGGACAAAGAATCCTGAAGAACTGGCTGGCTATGATGTGGTTCTCACGACATATTCTATTGTAACAAATGAAGTCCCGAAACAACCTTTAGTTGATGATGATGAATCTGATGAGAAAAATGGGGAAAAATATGGAATATCTTCTGAATTTTCAATTAATAAGAAGAGAAAAAAGGCTCCTGTTGTTAGTAAGAAGGGAAAGAAGGGCAGAAAAGGAATTGATAGTTCCTCTTTTGATTGCAGTTCTGGTCCCCTTGCAAGAGTGGGTTGGTTTAGGGTGATACTGGATGAAGCTCAGACAATTAAGAATCACAGAACTCAAGTGGCTAGAGCCTGCTGTAGCCTTCGAGCCAAAAGAAGGTGGTGTTTGTCCGGTACACCTATACAAAATGCAATTGATGATTTATACAGCTACTTCAGATTTCTGAAATATGATCCCTATGCTGTATATAAGTCATTTTACAGTACCATTAAGGTTCCAATATCGAGAAATTCAATCCACGGTTACAAGAAGCTCCAAGCAGTTCTGAGGGCTATAATGTTGCGTCGAACAAAAGGAACATTGATCGATGGGCAACCTATAATTGAATTACCGCCAAAAACAATACATTTGAGTAAAGTGGAGTTCTCATCTGAGGAGCGGGCCTTCTATACCAAGCTAGAAGCTGATTCACGCACTAAATTCAAGGCATATGCTGCTGCTGGGACAGTTAATCAAAACTATGCAAATATCCTTTTGATGCTTTTGCGCCTCCGGCAGGCTTGTGACCATCCACTGCTTGTTAAAGGATATGACTCTGACTGTGTTGGGAAAGATTCTGTGAAAATGGCAAGGCAACTTCCTAGGGATATGCTTTTGGATCTACTGCATCTCCTGGAAACTTCCTTGGCCCTTTGTCGTGTATGCAATGATCCACCTGAAGACCCTGTTGTTACTATGTGTGGCCATGTTTTCTGCTATCAGTGTGTTTCAGAATATTTGACGGGTGATGACAATATGTGCCCTGCTATTGAATGTAAAGAACAAGTTGGTCCTGATAACGTCTTCTCCAAATCCACTCTCATAAGTTGCCTATCTAATGATCTTGATGGTAGTTCAATGAATTCTCGGTCGGATGAGAAATCAATTGTGGTACAGAATGAGTATAGTTCCTCTAAAATCAGAGCTGTTATTAAGATTTTGCAGTCGCATTGCCAATTAAACGACTCAAATTCGGAAACGTACAACTCTACTGGACGCAATGGAGACCCTTATTTTGGAACCGAAATCACAGATAGTAGCTATTCAGGTGTTGATGTTGTAAAGCACACAACAGTAGTTTCAAACTCCCCAAATGATGGACCAATAAAAGCAATTATTTTCTCCCAATGGACTAGCATGTTGGATTTAGTTGAAACATCACTGAACCAATATTGTATACAGTACAGAAGGCTTGATGGTACAATGAGTCTGGCATCAAGAGACAGGGGTGTCAAAGATTTCAACACTGATCCGGAGATCACTGTTATGCTTATGTCCCTAAAGGCAGGAAACCTTGGTCTGAACATGGTTGCTGCATGCCATGTTATCCTTTTGGACCTGTGGTGGAATCCAACTACTGAAGATCAAGCTGTTGATCGGGCACATAGAATTGGACAGACTCGACCTGTTACTGTAACACGTCTCACTATTAAGGATACAGTGGAGGACAGGATATTAGCTCTACAGGAAGAGAAGAGAAAAATGGTTGCGTCTGCTTTTGGCGAAGATCATAGTGGGGGCTCTGCCGCACGTCTGACAGTTGAGGATCTCAGATACCTATTTATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006304 GO:0006305 GO:0006306 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009292 GO:0009294 GO:0009605 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0009991 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019787 GO:0022402 GO:0030162 GO:0031047 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031668 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0032392 GO:0032434 GO:0032435 GO:0032446 GO:0032508 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042176 GO:0042177 GO:0042262 GO:0042623 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0044786 GO:0045003 GO:0045005 GO:0045861 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070035 GO:0070647 GO:0071103 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0140083 GO:0140096 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901799 GO:1902298 GO:1902969 GO:1903047 GO:1903050 GO:1903051 GO:1903362 GO:1903363 GO:1990505 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
ko04918 map04918
Pfam Domains
Protein Families
Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

1057

Amino Acids

117.81

Weight (kDa)

7.1

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2828
Acc36I ACCTGC 1 cut(s) 1238
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 2696
AccBSI CCGCTC 1 cut(s) 1999
AccI GTMKAC 2 cut(s) 448, 2776
AccII CGCG 1 cut(s) 104
AccIII TCCGGA 1 cut(s) 2851
AciI CCGC 5 cut(s) 14, 104, 1952, 1999, 3126
AclWI GGATC 7 cut(s) 192, 867, 1787, 2226, 2264, 2843, 3153
AcoI YGGCCR 1 cut(s) 2302
AcsI RAATTY 9 cut(s) 261, 475, 683, 1114, 1505, 1849, 2039, 2461, 2569
AcuI CTGAAG 5 cut(s) 1125, 1395, 1759, 2298, 2979
AfaI GTAC 8 cut(s) 1210, 1252, 1735, 1825, 2493, 2582, 2783, 2800
AfiI CCNNNNNNNGG 8 cut(s) 394, 800, 1247, 1716, 2116, 2615, 2696, 3163
AflIII ACRYGT 1 cut(s) 3017
AjiI CACGTC 2 cut(s) 3020, 3131
AjnI CCWGG 3 cut(s) 665, 793, 2232
AjuI GAANNNNNNNTTGG 2 cut(s) 923, 955
Alw21I GWGCWC 1 cut(s) 466
Alw26I GTCTC 5 cut(s) 648, 826, 2598, 2814, 3026
AlwI GGATC 7 cut(s) 192, 867, 1787, 2226, 2264, 2843, 3153
Ama87I CYCGRG 1 cut(s) 459
Aor13HI TCCGGA 1 cut(s) 2851
AoxI GGCC 7 cut(s) 600, 692, 1009, 1238, 2001, 2247, 2302
ApeKI GCWGC 8 cut(s) 455, 848, 1244, 1330, 1356, 2054, 2057, 2912
ApoI RAATTY 9 cut(s) 261, 475, 683, 1114, 1505, 1849, 2039, 2461, 2569
ArsI GACNNNNNNTTYG 2 cut(s) 2597, 2629
AseI ATTAAT 1 cut(s) 1515
Asp700I GAANNNNTTC 1 cut(s) 1498
AspA2I CCTAGG 1 cut(s) 2201
AspLEI GCGC 2 cut(s) 104, 2109
AsuHPI GGTGA 6 cut(s) 377, 409, 629, 815, 1648, 2357
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 7 cut(s) 561, 715, 910, 1607, 2390, 2699, 2935
AvrII CCTAGG 1 cut(s) 2201
AxyI CCTNAGG 1 cut(s) 489
BaeGI GKGCMC 2 cut(s) 2363, 2983
BaeI ACNNNNGTAYC 2 cut(s) 1242, 1275
BalI TGGCCA 1 cut(s) 2304
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 3122
BarI GAAGNNNNNNTAC 2 cut(s) 873, 905
BbsI GAAGAC 2 cut(s) 2286, 2395
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 8 cut(s) 442, 860, 1256, 1317, 1368, 2041, 2044, 2899
BccI CCATC 8 cut(s) 580, 798, 890, 1922, 2136, 2441, 2690, 2789
BciT130I CCWGG 3 cut(s) 667, 795, 2234
BciVI GTATCC 1 cut(s) 3028
BclI TGATCA 1 cut(s) 1003
BcoDI GTCTC 5 cut(s) 648, 826, 2598, 2814, 3026
BfmI CTRYAG 3 cut(s) 578, 1696, 3062
BfuAI ACCTGC 1 cut(s) 1238
BfuI GTATCC 1 cut(s) 3028
BisI GCNGC 9 cut(s) 456, 849, 1245, 1331, 1357, 2055, 2058, 2913, 3126
BlnI CCTAGG 1 cut(s) 2201
BlsI GCNGC 9 cut(s) 457, 850, 1246, 1332, 1358, 2056, 2059, 2914, 3127
Bme1390I CCNGG 3 cut(s) 667, 795, 2234
Bme18I GGWCC 7 cut(s) 561, 715, 910, 1607, 2390, 2699, 2935
BmeT110I CYCGRG 1 cut(s) 459
BmgBI CACGTC 2 cut(s) 3020, 3131
BmiI GGNNCC 9 cut(s) 333, 563, 631, 716, 912, 1536, 1609, 1836, 2620
BmrFI CCNGG 3 cut(s) 667, 795, 2234
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 5 cut(s) 287, 939, 2088, 2236, 2822
BmuI ACTGGG 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 2286, 2395
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpmI CTGGAG 1 cut(s) 1182
BpuEI CTTGAG 2 cut(s) 427, 1662
Bsa29I ATCGAT 1 cut(s) 1926
BsaBI GATNNNNATC 1 cut(s) 864
BsaI GGTCTC 2 cut(s) 648, 2598
BsaJI CCNNGG 7 cut(s) 272, 666, 1012, 1858, 2201, 2244, 2893
BsaWI WCCGGW 2 cut(s) 1730, 2851
BsaXI ACNNNNNCTCC 4 cut(s) 2214, 2244, 2390, 2420
Bsc4I CCNNNNNNNGG 8 cut(s) 394, 800, 1247, 1716, 2116, 2615, 2696, 3163
Bse1I ACTGG 5 cut(s) 292, 417, 1386, 1647, 2596
Bse21I CCTNAGG 1 cut(s) 489
Bse3DI GCAATG 4 cut(s) 679, 2272, 2548, 2605
Bse8I GATNNNNATC 1 cut(s) 864
BseAI TCCGGA 1 cut(s) 2851
BseBI CCWGG 3 cut(s) 667, 795, 2234
BseCI ATCGAT 1 cut(s) 1926
BseDI CCNNGG 7 cut(s) 272, 666, 1012, 1858, 2201, 2244, 2893
BseJI GATNNNNATC 1 cut(s) 864
BseLI CCNNNNNNNGG 8 cut(s) 394, 800, 1247, 1716, 2116, 2615, 2696, 3163
BseMI GCAATG 4 cut(s) 679, 2272, 2548, 2605
BseMII CTCAG 7 cut(s) 503, 687, 1161, 1667, 1877, 1983, 3163
BseNI ACTGG 5 cut(s) 292, 417, 1386, 1647, 2596
BseRI GAGGAG 1 cut(s) 2009
BseSI GKGCMC 2 cut(s) 2363, 2983
BseXI GCAGC 8 cut(s) 442, 860, 1256, 1317, 1368, 2041, 2044, 2899
BseYI CCCAGC 2 cut(s) 314, 2060
BsgI GTGCAG 1 cut(s) 1200
Bsh1236I CGCG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 2471
BshFI GGCC 7 cut(s) 602, 694, 1011, 1240, 2003, 2249, 2304
BshNI GGYRCC 1 cut(s) 331
BshVI ATCGAT 1 cut(s) 1926
BsiEI CGRYCG 1 cut(s) 2471
BsiHKAI GWGCWC 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 3 cut(s) 1731, 2113, 2852
BslFI GGGAC 5 cut(s) 896, 1418, 1593, 2077, 2860
BslI CCNNNNNNNGG 8 cut(s) 394, 800, 1247, 1716, 2116, 2615, 2696, 3163
BsmAI GTCTC 5 cut(s) 648, 826, 2598, 2814, 3026
BsmBI CGTCTC 1 cut(s) 3026
BsmFI GGGAC 5 cut(s) 896, 1418, 1593, 2077, 2860
BsmI GAATGC 1 cut(s) 589
BsnI GGCC 7 cut(s) 602, 694, 1011, 1240, 2003, 2249, 2304
Bso31I GGTCTC 2 cut(s) 648, 2598
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 4 cut(s) 466, 2363, 2983, 3122
Bsp13I TCCGGA 1 cut(s) 2851
BspACI CCGC 5 cut(s) 14, 104, 1952, 1999, 3126
BspANI GGCC 7 cut(s) 602, 694, 1011, 1240, 2003, 2249, 2304
BspCNI CTCAG 7 cut(s) 502, 688, 1162, 1666, 1878, 1984, 3162
BspDI ATCGAT 1 cut(s) 1926
BspEI TCCGGA 1 cut(s) 2851
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 9 cut(s) 333, 563, 631, 716, 912, 1536, 1609, 1836, 2620
BspMAI CTGCAG 1 cut(s) 582
BspMI ACCTGC 1 cut(s) 1238
BspPI GGATC 7 cut(s) 192, 867, 1787, 2226, 2264, 2843, 3153
BspQI GCTCTTC 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 331
BspTNI GGTCTC 2 cut(s) 648, 2598
BsrBI CCGCTC 1 cut(s) 1999
BsrDI GCAATG 4 cut(s) 679, 2272, 2548, 2605
BsrI ACTGG 5 cut(s) 292, 417, 1386, 1647, 2596
BssECI CCNNGG 7 cut(s) 272, 666, 1012, 1858, 2201, 2244, 2893
BssNAI GTATAC 1 cut(s) 2777
BssT1I CCWWGG 5 cut(s) 272, 1012, 2201, 2244, 2893
Bst1107I GTATAC 1 cut(s) 2777
Bst2UI CCWGG 3 cut(s) 667, 795, 2234
Bst6I CTCTTC 6 cut(s) 340, 551, 921, 1517, 3063, 3068
BstAPI GCANNNNNTGC 1 cut(s) 2054
BstC8I GCNNGC 6 cut(s) 1242, 1387, 1693, 2001, 2118, 2917
BstDEI CTNAG 8 cut(s) 489, 696, 994, 1170, 1653, 1886, 1992, 3149
BstDSI CCRYGG 1 cut(s) 1858
BstENI CCTNNNNNAGG 2 cut(s) 798, 2114
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 2 cut(s) 104, 2109
BstMAI GTCTC 5 cut(s) 648, 826, 2598, 2814, 3026
BstMCI CGRYCG 1 cut(s) 2471
BstMWI GCNNNNNNNGC 4 cut(s) 461, 1322, 2054, 2113
BstNI CCWGG 3 cut(s) 667, 795, 2234
BstNSI RCATGY 2 cut(s) 2740, 2919
BstSCI CCNGG 3 cut(s) 665, 793, 2232
BstSFI CTRYAG 3 cut(s) 578, 1696, 3062
BstSLI GKGCMC 2 cut(s) 2363, 2983
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 8 cut(s) 442, 860, 1256, 1317, 1368, 2041, 2044, 2899
BstV2I GAAGAC 2 cut(s) 2286, 2395
BstX2I RGATCY 3 cut(s) 859, 2218, 3145
BstYI RGATCY 3 cut(s) 859, 2218, 3145
BstZ17I GTATAC 1 cut(s) 2777
Bsu15I ATCGAT 1 cut(s) 1926
Bsu36I CCTNAGG 1 cut(s) 489
BsuI GTATCC 1 cut(s) 3028
BsuRI GGCC 7 cut(s) 602, 694, 1011, 1240, 2003, 2249, 2304
BsuTUI ATCGAT 1 cut(s) 1926
BtgI CCRYGG 1 cut(s) 1858
BtgZI GCGATG 1 cut(s) 441
BtrI CACGTC 2 cut(s) 3020, 3131
BtsI GCAGTG 3 cut(s) 709, 1147, 2132
BveI ACCTGC 1 cut(s) 1238
Cac8I GCNNGC 6 cut(s) 1242, 1387, 1693, 2001, 2118, 2917
CciI TCATGA 1 cut(s) 25
CfoI GCGC 2 cut(s) 104, 2109
ClaI ATCGAT 1 cut(s) 1926
CseI GACGC 3 cut(s) 1892, 2604, 3078
Csp6I GTAC 8 cut(s) 1209, 1251, 1734, 1824, 2492, 2581, 2782, 2799
CspCI CAANNNNNGTGG 2 cut(s) 1123, 1158
CviQI GTAC 8 cut(s) 1209, 1251, 1734, 1824, 2492, 2581, 2782, 2799
DdeI CTNAG 8 cut(s) 489, 696, 994, 1170, 1653, 1886, 1992, 3149
DraI TTTAAA 1 cut(s) 1113
DrdI GACNNNNNNGTC 1 cut(s) 2828
DseDI GACNNNNNNGTC 1 cut(s) 2828
EaeI YGGCCR 1 cut(s) 2302
Eam1104I CTCTTC 6 cut(s) 340, 551, 921, 1517, 3063, 3068
EarI CTCTTC 6 cut(s) 340, 551, 921, 1517, 3063, 3068
Eco130I CCWWGG 5 cut(s) 272, 1012, 2201, 2244, 2893
Eco147I AGGCCT 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 3122
Eco31I GGTCTC 2 cut(s) 648, 2598
Eco47I GGWCC 7 cut(s) 561, 715, 910, 1607, 2390, 2699, 2935
Eco57I CTGAAG 5 cut(s) 1125, 1395, 1759, 2298, 2979
Eco81I CCTNAGG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 459
EcoNI CCTNNNNNAGG 2 cut(s) 798, 2114
EcoO109I RGGNCCY 3 cut(s) 561, 715, 1009
EcoRI GAATTC 2 cut(s) 261, 2461
EcoRII CCWGG 3 cut(s) 665, 793, 2232
EcoT14I CCWWGG 5 cut(s) 272, 1012, 2201, 2244, 2893
EcoT22I ATGCAT 1 cut(s) 738
EcoT38I GRGCYC 1 cut(s) 3122
ErhI CCWWGG 5 cut(s) 272, 1012, 2201, 2244, 2893
Esp3I CGTCTC 1 cut(s) 3026
FaqI GGGAC 5 cut(s) 896, 1418, 1593, 2077, 2860
FauI CCCGC 1 cut(s) 1992
FauNDI CATATG 2 cut(s) 352, 2050
FbaI TGATCA 1 cut(s) 1003
FblI GTMKAC 2 cut(s) 448, 2776
Fnu4HI GCNGC 9 cut(s) 456, 849, 1245, 1331, 1357, 2055, 2058, 2913, 3126
FriOI GRGCYC 1 cut(s) 3122
Fsp4HI GCNGC 9 cut(s) 456, 849, 1245, 1331, 1357, 2055, 2058, 2913, 3126
GlaI GCGC 2 cut(s) 103, 2108
GluI GCNGC 9 cut(s) 456, 849, 1245, 1331, 1357, 2055, 2058, 2913, 3126
GsaI CCCAGC 2 cut(s) 318, 2064
GsuI CTGGAG 1 cut(s) 1182
HaeIII GGCC 7 cut(s) 602, 694, 1011, 1240, 2003, 2249, 2304
HapII CCGG 3 cut(s) 1731, 2113, 2852
HgaI GACGC 3 cut(s) 1892, 2604, 3078
HhaI GCGC 2 cut(s) 104, 2109
Hin6I GCGC 2 cut(s) 102, 2107
HinP1I GCGC 2 cut(s) 102, 2107
HincII GTYRAC 3 cut(s) 253, 449, 1162
HindII GTYRAC 3 cut(s) 253, 449, 1162
HindIII AAGCTT 1 cut(s) 1107
HpaII CCGG 3 cut(s) 1731, 2113, 2852
HphI GGTGA 6 cut(s) 377, 409, 629, 815, 1648, 2357
Hpy166II GTNNAC 5 cut(s) 253, 449, 1162, 1736, 2777
Hpy8I GTNNAC 5 cut(s) 253, 449, 1162, 1736, 2777
Hpy99I CGWCG 1 cut(s) 1908
HpyCH4IV ACGT 4 cut(s) 2400, 2579, 3019, 3130
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 1322, 2054, 2113
HpyF3I CTNAG 8 cut(s) 489, 696, 994, 1170, 1653, 1886, 1992, 3149
HpySE526I ACGT 4 cut(s) 2400, 2579, 3019, 3130
HspAI GCGC 2 cut(s) 102, 2107
Kpn2I TCCGGA 1 cut(s) 2851
Ksp22I TGATCA 1 cut(s) 1003
LguI GCTCTTC 1 cut(s) 340
LmnI GCTCC 5 cut(s) 62, 1297, 1540, 1878, 1996
Lsp1109I GCAGC 8 cut(s) 442, 860, 1256, 1317, 1368, 2041, 2044, 2899
LweI GCATC 5 cut(s) 287, 939, 2088, 2236, 2822
MaeII ACGT 4 cut(s) 2400, 2579, 3019, 3130
MaeIII GTNAC 8 cut(s) 776, 814, 1420, 1862, 2123, 2290, 3007, 3013
MbiI CCGCTC 1 cut(s) 1999
MfeI CAATTG 2 cut(s) 1752, 2484
MflI RGATCY 3 cut(s) 859, 2218, 3145
MhlI GDGCHC 4 cut(s) 466, 2363, 2983, 3122
MlsI TGGCCA 1 cut(s) 2304
MluNI TGGCCA 1 cut(s) 2304
MlyI GAGTC 4 cut(s) 2147, 2558, 2815, 2992
MmeI TCCRAC 3 cut(s) 2451, 2721, 2975
Mox20I TGGCCA 1 cut(s) 2304
Mph1103I ATGCAT 1 cut(s) 738
MroI TCCGGA 1 cut(s) 2851
MroXI GAANNNNTTC 1 cut(s) 1498
MscI TGGCCA 1 cut(s) 2304
MslI CAYNNNNRTG 2 cut(s) 731, 2864
Msp20I TGGCCA 1 cut(s) 2304
MspI CCGG 3 cut(s) 1731, 2113, 2852
MspR9I CCNGG 3 cut(s) 667, 795, 2234
MunI CAATTG 2 cut(s) 1752, 2484
Mva1269I GAATGC 1 cut(s) 589
MvaI CCWGG 3 cut(s) 667, 795, 2234
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 4 cut(s) 461, 1322, 2054, 2113
NdeI CATATG 2 cut(s) 352, 2050
NlaIV GGNNCC 9 cut(s) 333, 563, 631, 716, 912, 1536, 1609, 1836, 2620
NmuCI GTSAC 3 cut(s) 776, 814, 2123
NsiI ATGCAT 1 cut(s) 738
NspI RCATGY 2 cut(s) 2740, 2919
PaeI GCATGC 1 cut(s) 2919
PaeR7I CTCGAG 1 cut(s) 459
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 340
PctI GAATGC 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 1498
PflMI CCANNNNNTGG 1 cut(s) 2696
PfoI TCCNGGA 1 cut(s) 2232
PkrI GCNGC 9 cut(s) 457, 850, 1246, 1332, 1358, 2056, 2059, 2914, 3127
PleI GAGTC 4 cut(s) 2147, 2558, 2814, 2992
PpsI GAGTC 4 cut(s) 2147, 2558, 2814, 2992
PpuMI RGGWCCY 2 cut(s) 561, 715
PshBI ATTAAT 1 cut(s) 1515
Psp5II RGGWCCY 2 cut(s) 561, 715
Psp6I CCWGG 3 cut(s) 665, 793, 2232
PspFI CCCAGC 2 cut(s) 314, 2060
PspGI CCWGG 3 cut(s) 665, 793, 2232
PspN4I GGNNCC 9 cut(s) 333, 563, 631, 716, 912, 1536, 1609, 1836, 2620
PspPPI RGGWCCY 2 cut(s) 561, 715
PspXI VCTCGAGB 1 cut(s) 459
PstI CTGCAG 1 cut(s) 582
PsuI RGATCY 3 cut(s) 859, 2218, 3145
RsaI GTAC 8 cut(s) 1210, 1252, 1735, 1825, 2493, 2582, 2783, 2800
RsaNI GTAC 8 cut(s) 1209, 1251, 1734, 1824, 2492, 2581, 2782, 2799
RseI CAYNNNNRTG 2 cut(s) 731, 2864
SalI GTCGAC 1 cut(s) 447
SapI GCTCTTC 1 cut(s) 340
SatI GCNGC 9 cut(s) 456, 849, 1245, 1331, 1357, 2055, 2058, 2913, 3126
SchI GAGTC 4 cut(s) 2147, 2558, 2815, 2992
ScrFI CCNGG 3 cut(s) 667, 795, 2234
SduI GDGCHC 4 cut(s) 466, 2363, 2983, 3122
SfaNI GCATC 5 cut(s) 287, 939, 2088, 2236, 2822
SfcI CTRYAG 3 cut(s) 578, 1696, 3062
Sfr274I CTCGAG 1 cut(s) 459
SinI GGWCC 7 cut(s) 561, 715, 910, 1607, 2390, 2699, 2935
SlaI CTCGAG 1 cut(s) 459
SmiMI CAYNNNNRTG 2 cut(s) 731, 2864
SmlI CTYRAG 3 cut(s) 442, 459, 1677
SmoI CTYRAG 3 cut(s) 442, 459, 1677
SphI GCATGC 1 cut(s) 2919
SseBI AGGCCT 1 cut(s) 694
SsiI CCGC 5 cut(s) 14, 104, 1952, 1999, 3126
SspI AATATT 3 cut(s) 511, 2336, 2771
StuI AGGCCT 1 cut(s) 694
StyD4I CCNGG 3 cut(s) 665, 793, 2232
StyI CCWWGG 5 cut(s) 272, 1012, 2201, 2244, 2893
TaiI ACGT 4 cut(s) 2403, 2582, 3022, 3133
TaqI TCGA 9 cut(s) 448, 460, 1189, 1282, 1705, 1844, 1906, 1926, 3001
TaqII GACCGA 2 cut(s) 898, 2457
TatI WGTACW 2 cut(s) 1208, 2781
TauI GCSGC 1 cut(s) 3128
TseFI GTSAC 3 cut(s) 776, 814, 2123
TseI GCWGC 8 cut(s) 455, 848, 1244, 1330, 1356, 2054, 2057, 2912
Tsp45I GTSAC 3 cut(s) 776, 814, 2123
Van91I CCANNNNNTGG 1 cut(s) 2696
VpaK11BI GGWCC 7 cut(s) 561, 715, 910, 1607, 2390, 2699, 2935
VspI ATTAAT 1 cut(s) 1515
XagI CCTNNNNNAGG 2 cut(s) 798, 2114
XapI RAATTY 9 cut(s) 261, 475, 683, 1114, 1505, 1849, 2039, 2461, 2569
XbaI TCTAGA 1 cut(s) 323
XceI RCATGY 2 cut(s) 2740, 2919
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 459
XmaJI CCTAGG 1 cut(s) 2201
XmiI GTMKAC 2 cut(s) 448, 2776
XmnI GAANNNNTTC 1 cut(s) 1498
Zsp2I ATGCAT 1 cut(s) 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.