Rw4G037570

recombinational repair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003214
Physical Location & Seq
Reverse (-)
64104065 .. 64111642
7578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G037570.1

Sequence Viewer

Length: 3078 bp
ATGTTTGGTGATGTGGATCACCTTCATGATTTGTTTCAGTCCACTTGGAGATGCTGCTCTTTCTTACGTGGATGGATTGGCAGTTTAATATCGAAGCATTGCACAGATGTGACTGGCTTACAATCAAGAAACTATCTTTCTAAACTGGTTAAAGAAAGGGAGCATCAACTTTCAACCTTCATGTCTCAAACGGCGTATATAGATCTTAGTTCATCTGACAGTGATTTAGAAGAGATAGAGCCTGTTGGTAGAAGAACTCTTCCACCTTCATTTTCTGCATCTGCTTCTGGTTCAAATTCAAGGAGTAAAGACTATGCTGACAAGTCTAGAAAGGTGCCTTCCCCTAGAAGAGCACATGCTTCTAATGGAATATTTCCTAATTATAATCACCACAGACAAGTGTTAGATAAGTTTCATCCCAGTTCAAGTGGTGACATAAGAGCGTCAAATCGACAGGTTGCCCGAGCAGATAGTTCTACGTATTTCTCTCAAAATGGAAATGCCCTTAAGAGGACCCTTCCATTATCTATGCAGGCTCTAAACCCTGCAGTAGATAACAGGGCCCACAATCAGTTCCGTGATACCACCAACAAGGGTTTTATGAGAGACCATTCAATCAGGGGGAATGATGAACATATGTATGATAGAATGCCTCCATTTGTAAAGTCATCGTCTAACTCCCAATTTCCTAGTTCAAGTGAGCCTCAATACCTTCCGGGAATAGGTGAAGAAAGGGTTGCTGACAGTGACGAGAGGCTGATATATCAAGCGGCACTAGAGGAACTTAATCAACCAAAACTTGAAGCTACTTTACCTGATGGTCTTTTGTCGGTCTCTCTTCTACGACATCAGAAAATTGCTTTGGCATGGATGCTTCAGAAGGAAACCAGAAGCTTGCATTGTCTAGGTGGAATCTTAGCTGATGATCAGGGCCTTGGTAAGACAATCTCAATGATTGCACTTATACAAATGCAGAGGTCTTTGCAATCGAAGTCAAAACCTGAACACTTGGACAATAAAACTGAAGCTTTGAATTTGGATGATGATGAGGACCATGGTGGTTGCGGTTTGGATAAAGTCAACAACACTGAAGAATCTGATCTTAAATCAACTCCAGAAGCTAGTACCTCTGCACAGCCATTCAAAAAGAAGAGGCCAGCAGCTGGTACATTGGTGGTTTGTCCAGCAAGTGTTCTTCGACAGTGGGCTAGGGAGCTGGATGAGAAGGTTGCAGAGGAAGCAAAATTGTCTGTACTTGTTTATCATGGAGGCAGCAGAACAAGGAATCCCGAAGAACTTGCTGGCTATGATGTGGTTCTCACTACATATGCTATTGTAACTAATGAAGTCCCAAAACAACCTTTAGTTGATGAGGATGAAGGGGATGAAAAAAATGTGGAAAAGTATGGATTATCTTCTGATTTTTCGGTCAACAAGAAGAGGAAAAAGGCTTCTATTGTTAGTAAGAAGGGAAAGAAAGGTAGGAAAGGATTTGACACTTCCCCTTTTGACTGTGGTTCTGGGCCACTTGCAAGGGTCGGTTGGTTTAGGGTGATACTAGATGAAGCGCAAACCATTAAGAATCACAGAACTCAAGTGGCTAGGGCCTGCTGTAGCCTTCGAGCCAAAAGAAGATGGTGTCTATCTGGTACACCAATACAAAATGCAATTGATGATTTATACAGTTACTTCAGATTTCTGAAATATGATCCTTATGCTGTGTATAAATCATTTTACACTACCATTAAGGTTCCAATATCCAGAAATTCACTCCAAGGTTACAAGAAGCTCCAAGCTGTTCTGAGAGCTATTATGCTGCGCCGGACAAAAGGAACAATGATTGATGGGCAACCTATAATTAATTTACCACCAAAAACAATTAACCTGAGTAAAGTGGAGTTCTCGTCTGAGGAGAGGGCCTTCTATACCAAATTAGAAGCTGATTCACGCTCTCAATTCAAGGCATATGCTGCTGCTGGCACAGTAAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGCCTTCGGCAGGCTTGTGATCACCCTCTACTTGTTAAAGGATATGACACTGACTGCGTTGGGAAAGATTCTGTGGCTATGGCAAGTACACTTTCTAGAGAGATGCTTATCAATCTATTGAATGCCCTGGAAAGTTCTGAGGCCATTTGTCGTGTTTGCAATGATGTACTTGAGAACCCTGTTGTTACTATGTGTGGCCATGTTTTCTGCCATCAGTGTGTGTCAGAAAATATGACTGGTGATGACAGTATGTGCCCTGCAATTGAATGCAAAAAACAAGTCGGTCCTGATGTTGTTTTCTCCGAATCCACTCTAATAAGTTGCCTCTCTAAGGATCTTGATGGTGGTTCAACAAATTCTCAGTTGATTGAGAAACCAGTAGTGGTACAGAATGAGTACACTTCATCTAAAGTCAGAGCTGTTATTGAGATAATACAGTCACACTGCAGGTTAAACAGCCCAAATTTGGAGCAATATAATTCTACAGGATGCAATAGAGACTCTTCTTTTGAAAATGAAAACCCATATTCAGACATCAATGTTGTAAAGCGCACAACCGTAGTTTCAAACTCGCCAAATGATGGACCAATTAAAGCAATCATTTTCTCCCAATGGACTAAGATGTTGGATTTAGTTGAGAATGCAATGAACGAGTACTGTATACAGTACAGAAGGCTTGATGGTACAATGACTCTGACATCAAGAGACAGGGCTGTCAAAGAATTCAACACTGATCCTGAGGTCACTGTTATGCTTATGTCACTAAAGGCAGGAAACCTTGGTCTAAACATGGTTGCTGCATGTCATGTTATCCTTTTGGATCTTTGGTGGAATCCAACAACTGAGGATCAAGCTGTTGATAGGGCACATAGAATTGGACAAACCCGGCCTGTTACTGTAACTCGACTTACTATTAAGGATACAGTAGAGGACAGGATATTAGCTCTACAGGATGAGAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGACAATAGTGGGGGCTCTGCAGCTCGTCTGACAGTTGAGGATCTCAGATACCTATTTATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006304 GO:0006305 GO:0006306 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009292 GO:0009294 GO:0009605 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0009991 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019787 GO:0022402 GO:0030162 GO:0031047 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031668 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0032392 GO:0032434 GO:0032435 GO:0032446 GO:0032508 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042176 GO:0042177 GO:0042262 GO:0042623 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0044786 GO:0045003 GO:0045005 GO:0045861 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070035 GO:0070647 GO:0071103 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0140083 GO:0140096 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901799 GO:1902298 GO:1902969 GO:1903047 GO:1903050 GO:1903051 GO:1903362 GO:1903363 GO:1990505 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
ko04918 map04918
Pfam Domains
Protein Families
Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

1025

Amino Acids

114.53

Weight (kDa)

7.89

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 283 - 683 1.3e-66 SNF2-related domain
zf-C3HC4_2 PF13923 724 - 760 5.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 724 - 760 8.3e-07 RING-type zinc-finger
zf-C3HC4 PF00097 724 - 760 1.3e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 724 - 760 4.5e-06 zinc finger of C3HC4-type, RING
Helicase_C PF00271 872 - 967 1.5e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AasI GACNNNNNNGTC 1 cut(s) 2735
Acc36I ACCTGC 1 cut(s) 2460
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 2 cut(s) 1163, 2603
AccI GTMKAC 1 cut(s) 2683
AciI CCGC 2 cut(s) 770, 1065
AclWI GGATC 7 cut(s) 24, 1703, 2364, 2750, 2850, 2877, 3060
AcoI YGGCCR 1 cut(s) 2218
AcsI RAATTY 6 cut(s) 295, 1033, 1765, 2377, 2485, 2744
AcuI CTGAAG 4 cut(s) 860, 1044, 1110, 1675
AfiI CCNNNNNNNGG 8 cut(s) 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
AflII CTTAAG 1 cut(s) 506
AjnI CCWGG 1 cut(s) 2148
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AleI CACNNNNGTG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 1270, 1302
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
AlwI GGATC 7 cut(s) 24, 1703, 2364, 2750, 2850, 2877, 3060
AlwNI CAGNNNCTG 1 cut(s) 1163
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 9 cut(s) 561, 931, 1154, 1523, 1605, 1917, 2163, 2218, 2909
ApaI GGGCCC 1 cut(s) 565
ApeKI GCWGC 8 cut(s) 54, 1160, 1272, 1816, 1970, 1973, 2819, 3032
ApoI RAATTY 6 cut(s) 295, 1033, 1765, 2377, 2485, 2744
ArsI GACNNNNNNTTYG 4 cut(s) 2286, 2318, 2513, 2545
AseI ATTAAT 1 cut(s) 1860
AspLEI GCGC 4 cut(s) 1570, 1821, 2025, 2574
AsuC2I CCSGG 2 cut(s) 717, 2908
AsuHPI GGTGA 9 cut(s) 11, 20, 380, 443, 737, 1564, 2036, 2273, 3020
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 4 cut(s) 513, 1051, 2306, 2606
AxyI CCTNAGG 1 cut(s) 2760
BaeGI GKGCMC 3 cut(s) 565, 2279, 2890
BaeI ACNNNNGTAYC 2 cut(s) 1158, 1191
BalI TGGCCA 1 cut(s) 2220
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 2 cut(s) 565, 3029
BarI GAAGNNNNNNTAC 2 cut(s) 795, 827
BbsI GAAGAC 1 cut(s) 3018
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
BccI CCATC 8 cut(s) 66, 812, 1629, 1838, 2241, 2357, 2597, 2696
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 1280, 1314
BciT130I CCWGG 1 cut(s) 2150
BciVI GTATCC 1 cut(s) 2935
BclI TGATCA 2 cut(s) 925, 2041
BcnI CCSGG 2 cut(s) 717, 2908
BcoDI GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
BfmI CTRYAG 6 cut(s) 546, 1612, 2467, 2505, 2969, 3030
BfrI CTTAAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 2460
BfuI GTATCC 1 cut(s) 2935
BglII AGATCT 1 cut(s) 202
BisI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
BlsI GCNGC 9 cut(s) 56, 772, 1162, 1274, 1818, 1972, 1975, 2821, 3034
BmcAI AGTACT 1 cut(s) 2678
Bme1390I CCNGG 3 cut(s) 717, 2150, 2908
Bme18I GGWCC 4 cut(s) 513, 1051, 2306, 2606
BmeT110I CYCGRG 1 cut(s) 462
BmiI GGNNCC 4 cut(s) 336, 515, 563, 1752
BmrFI CCNGG 3 cut(s) 717, 2150, 2908
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 8 cut(s) 41, 172, 287, 861, 2004, 2115, 2501, 3005
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 3018
BpmI CTGGAG 1 cut(s) 1098
BpuEI CTTGAG 2 cut(s) 1578, 2213
BpuMI CCSGG 2 cut(s) 717, 2908
BsaAI YACGTR 2 cut(s) 68, 480
BsaBI GATNNNNATC 2 cut(s) 15, 2129
BsaI GGTCTC 2 cut(s) 600, 838
BsaJI CCNNGG 5 cut(s) 934, 1054, 1774, 2148, 2800
BsaXI ACNNNNNCTCC 2 cut(s) 1889, 1919
Bsc4I CCNNNNNNNGG 8 cut(s) 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
Bse1I ACTGG 5 cut(s) 118, 150, 420, 2263, 2399
Bse21I CCTNAGG 1 cut(s) 2760
Bse3DI GCAATG 3 cut(s) 97, 2188, 2673
Bse8I GATNNNNATC 2 cut(s) 15, 2129
BseBI CCWGG 1 cut(s) 2150
BseDI CCNNGG 5 cut(s) 934, 1054, 1774, 2148, 2800
BseGI GGATG 9 cut(s) 77, 415, 876, 1045, 1225, 1381, 1390, 2516, 2980
BseJI GATNNNNATC 2 cut(s) 15, 2129
BseLI CCNNNNNNNGG 8 cut(s) 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
BseMI GCAATG 3 cut(s) 97, 2188, 2673
BseMII CTCAG 8 cut(s) 1793, 1877, 1899, 2151, 2396, 2751, 2856, 3070
BseNI ACTGG 5 cut(s) 118, 150, 420, 2263, 2399
BseRI GAGGAG 1 cut(s) 1925
BseSI GKGCMC 3 cut(s) 565, 2279, 2890
BseXI GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
BsgI GTGCAG 1 cut(s) 1116
BshFI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
BshNI GGYRCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 3 cut(s) 716, 1822, 2908
BslFI GGGAC 1 cut(s) 1334
BslI CCNNNNNNNGG 8 cut(s) 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
BsmAI GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
BsmFI GGGAC 1 cut(s) 1334
BsmI GAATGC 4 cut(s) 654, 2149, 2294, 2668
BsnI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
Bso31I GGTCTC 2 cut(s) 600, 838
BsoBI CYCGRG 1 cut(s) 462
Bsp120I GGGCCC 1 cut(s) 561
Bsp1286I GDGCHC 5 cut(s) 355, 565, 2279, 2890, 3029
Bsp19I CCATGG 1 cut(s) 1054
BspACI CCGC 2 cut(s) 770, 1065
BspANI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
BspCNI CTCAG 8 cut(s) 1794, 1878, 1900, 2152, 2395, 2752, 2857, 3069
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 336, 515, 563, 1752
BspMAI CTGCAG 3 cut(s) 550, 2471, 3034
BspMI ACCTGC 1 cut(s) 2460
BspPI GGATC 7 cut(s) 24, 1703, 2364, 2750, 2850, 2877, 3060
BspQI GCTCTTC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 334
BspTI CTTAAG 1 cut(s) 506
BspTNI GGTCTC 2 cut(s) 600, 838
BsrDI GCAATG 3 cut(s) 97, 2188, 2673
BsrI ACTGG 5 cut(s) 118, 150, 420, 2263, 2399
BssECI CCNNGG 5 cut(s) 934, 1054, 1774, 2148, 2800
BssNAI GTATAC 1 cut(s) 2684
BssT1I CCWWGG 4 cut(s) 934, 1054, 1774, 2800
Bst1107I GTATAC 1 cut(s) 2684
Bst2UI CCWGG 1 cut(s) 2150
Bst6I CTCTTC 8 cut(s) 225, 264, 343, 843, 1145, 1433, 2530, 2975
BstAFI CTTAAG 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 1970
BstBAI YACGTR 2 cut(s) 68, 480
BstC8I GCNNGC 7 cut(s) 534, 896, 1158, 1303, 1609, 1978, 2034
BstDSI CCRYGG 1 cut(s) 1054
BstENI CCTNNNNNAGG 2 cut(s) 2030, 2351
BstF5I GGATG 9 cut(s) 77, 415, 876, 1045, 1225, 1381, 1390, 2516, 2980
BstHHI GCGC 4 cut(s) 1570, 1821, 2025, 2574
BstMAI GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
BstMWI GCNNNNNNNGC 3 cut(s) 1238, 1970, 2029
BstNI CCWGG 1 cut(s) 2150
BstNSI RCATGY 2 cut(s) 359, 2826
BstSCI CCNGG 3 cut(s) 715, 2148, 2906
BstSFI CTRYAG 6 cut(s) 546, 1612, 2467, 2505, 2969, 3030
BstSLI GKGCMC 3 cut(s) 565, 2279, 2890
BstSNI TACGTA 1 cut(s) 480
BstV1I GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
BstV2I GAAGAC 1 cut(s) 3018
BstX2I RGATCY 4 cut(s) 202, 2356, 2842, 3052
BstYI RGATCY 4 cut(s) 202, 2356, 2842, 3052
BstZ17I GTATAC 1 cut(s) 2684
Bsu36I CCTNAGG 1 cut(s) 2760
BsuI GTATCC 1 cut(s) 2935
BsuRI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
BtgI CCRYGG 1 cut(s) 1054
BtsCI GGATG 9 cut(s) 77, 415, 876, 1045, 1225, 1381, 1390, 2516, 2980
BtsI GCAGTG 1 cut(s) 2464
BtsIMutI CAGTG 9 cut(s) 226, 751, 1086, 1208, 2070, 2243, 2464, 2751, 2766
BveI ACCTGC 1 cut(s) 2460
Cac8I GCNNGC 7 cut(s) 534, 896, 1158, 1303, 1609, 1978, 2034
CaiI CAGNNNCTG 1 cut(s) 1163
CciI TCATGA 1 cut(s) 25
CfoI GCGC 4 cut(s) 1570, 1821, 2025, 2574
CseI GACGC 1 cut(s) 432
DrdI GACNNNNNNGTC 1 cut(s) 2735
DseDI GACNNNNNNGTC 1 cut(s) 2735
EaeI YGGCCR 1 cut(s) 2218
Eam1104I CTCTTC 8 cut(s) 225, 264, 343, 843, 1145, 1433, 2530, 2975
EarI CTCTTC 8 cut(s) 225, 264, 343, 843, 1145, 1433, 2530, 2975
Eco105I TACGTA 1 cut(s) 480
Eco130I CCWWGG 4 cut(s) 934, 1054, 1774, 2800
Eco24I GRGCYC 2 cut(s) 565, 3029
Eco31I GGTCTC 2 cut(s) 600, 838
Eco47I GGWCC 4 cut(s) 513, 1051, 2306, 2606
Eco57I CTGAAG 4 cut(s) 860, 1044, 1110, 1675
Eco81I CCTNAGG 1 cut(s) 2760
Eco88I CYCGRG 1 cut(s) 462
EcoNI CCTNNNNNAGG 2 cut(s) 2030, 2351
EcoO109I RGGNCCY 5 cut(s) 513, 561, 931, 1605, 1917
EcoRI GAATTC 1 cut(s) 2744
EcoRII CCWGG 1 cut(s) 2148
EcoT14I CCWWGG 4 cut(s) 934, 1054, 1774, 2800
EcoT38I GRGCYC 2 cut(s) 565, 3029
ErhI CCWWGG 4 cut(s) 934, 1054, 1774, 2800
FaqI GGGAC 1 cut(s) 1334
FauNDI CATATG 3 cut(s) 636, 1327, 1966
FbaI TGATCA 2 cut(s) 925, 2041
FblI GTMKAC 1 cut(s) 2683
Fnu4HI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
FokI GGATG 9 cut(s) 84, 402, 883, 1052, 1232, 1388, 1397, 2523, 2987
FriOI GRGCYC 2 cut(s) 565, 3029
Fsp4HI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
GlaI GCGC 4 cut(s) 1569, 1820, 2024, 2573
GluI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
GsuI CTGGAG 1 cut(s) 1098
HaeIII GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
HapII CCGG 3 cut(s) 716, 1822, 2908
HgaI GACGC 1 cut(s) 432
HhaI GCGC 4 cut(s) 1570, 1821, 2025, 2574
Hin6I GCGC 4 cut(s) 1568, 1819, 2023, 2572
HinP1I GCGC 4 cut(s) 1568, 1819, 2023, 2572
HincII GTYRAC 2 cut(s) 1081, 1432
HindII GTYRAC 2 cut(s) 1081, 1432
HindIII AAGCTT 2 cut(s) 892, 1026
HpaII CCGG 3 cut(s) 716, 1822, 2908
HphI GGTGA 9 cut(s) 11, 20, 380, 443, 737, 1564, 2036, 2273, 3020
Hpy166II GTNNAC 7 cut(s) 42, 1081, 1432, 1652, 2111, 2421, 2684
Hpy8I GTNNAC 7 cut(s) 42, 1081, 1432, 1652, 2111, 2421, 2684
HpyCH4IV ACGT 2 cut(s) 67, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 1238, 1970, 2029
HpySE526I ACGT 2 cut(s) 67, 479
HspAI GCGC 4 cut(s) 1568, 1819, 2023, 2572
Ksp22I TGATCA 2 cut(s) 925, 2041
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 4 cut(s) 160, 1213, 1794, 2491
Lsp1109I GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
LweI GCATC 8 cut(s) 41, 172, 287, 861, 2004, 2115, 2501, 3005
MaeII ACGT 2 cut(s) 67, 479
MfeI CAATTG 2 cut(s) 1668, 2283
MflI RGATCY 4 cut(s) 202, 2356, 2842, 3052
MhlI GDGCHC 5 cut(s) 355, 565, 2279, 2890, 3029
MlsI TGGCCA 1 cut(s) 2220
MluNI TGGCCA 1 cut(s) 2220
MlyI GAGTC 2 cut(s) 2516, 2707
MmeI TCCRAC 2 cut(s) 2628, 2882
Mox20I TGGCCA 1 cut(s) 2220
MscI TGGCCA 1 cut(s) 2220
MslI CAYNNNNRTG 5 cut(s) 24, 107, 639, 2238, 2771
Msp20I TGGCCA 1 cut(s) 2220
MspA1I CMGCKG 1 cut(s) 1163
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 3 cut(s) 716, 1822, 2908
MspR9I CCNGG 3 cut(s) 717, 2150, 2908
MunI CAATTG 2 cut(s) 1668, 2283
Mva1269I GAATGC 4 cut(s) 654, 2149, 2294, 2668
MvaI CCWGG 1 cut(s) 2150
MwoI GCNNNNNNNGC 3 cut(s) 1238, 1970, 2029
NciI CCSGG 2 cut(s) 717, 2908
NcoI CCATGG 1 cut(s) 1054
NdeI CATATG 3 cut(s) 636, 1327, 1966
NlaIV GGNNCC 4 cut(s) 336, 515, 563, 1752
NmuCI GTSAC 6 cut(s) 109, 431, 746, 2460, 2764, 2781
NspI RCATGY 2 cut(s) 359, 2826
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 343
PctI GAATGC 4 cut(s) 654, 2149, 2294, 2668
PfeI GAWTC 8 cut(s) 912, 1094, 1285, 1582, 1943, 2090, 2327, 2854
PflMI CCANNNNNTGG 2 cut(s) 1163, 2603
PfoI TCCNGGA 1 cut(s) 715
PkrI GCNGC 9 cut(s) 56, 772, 1162, 1274, 1818, 1972, 1975, 2821, 3034
PleI GAGTC 2 cut(s) 2516, 2707
PpsI GAGTC 2 cut(s) 2516, 2707
Ppu21I YACGTR 2 cut(s) 68, 480
PpuMI RGGWCCY 1 cut(s) 513
PshBI ATTAAT 1 cut(s) 1860
PsiI TTATAA 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 2148
PspGI CCWGG 1 cut(s) 2148
PspN4I GGNNCC 4 cut(s) 336, 515, 563, 1752
PspOMI GGGCCC 1 cut(s) 561
PspPPI RGGWCCY 1 cut(s) 513
PstI CTGCAG 3 cut(s) 550, 2471, 3034
PstNI CAGNNNCTG 1 cut(s) 1163
PsuI RGATCY 4 cut(s) 202, 2356, 2842, 3052
PvuII CAGCTG 1 cut(s) 1163
RseI CAYNNNNRTG 5 cut(s) 24, 107, 639, 2238, 2771
SapI GCTCTTC 1 cut(s) 343
SatI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
ScaI AGTACT 1 cut(s) 2678
SchI GAGTC 2 cut(s) 2516, 2707
ScrFI CCNGG 3 cut(s) 717, 2150, 2908
SduI GDGCHC 5 cut(s) 355, 565, 2279, 2890, 3029
SfaNI GCATC 8 cut(s) 41, 172, 287, 861, 2004, 2115, 2501, 3005
SfcI CTRYAG 6 cut(s) 546, 1612, 2467, 2505, 2969, 3030
SinI GGWCC 4 cut(s) 513, 1051, 2306, 2606
SmiMI CAYNNNNRTG 5 cut(s) 24, 107, 639, 2238, 2771
SmlI CTYRAG 3 cut(s) 506, 1593, 2192
SmoI CTYRAG 3 cut(s) 506, 1593, 2192
SnaBI TACGTA 1 cut(s) 480
SsiI CCGC 2 cut(s) 770, 1065
SspI AATATT 2 cut(s) 372, 2005
StyD4I CCNGG 3 cut(s) 715, 2148, 2906
StyI CCWWGG 4 cut(s) 934, 1054, 1774, 2800
TaiI ACGT 2 cut(s) 70, 482
TaqI TCGA 6 cut(s) 92, 451, 989, 1198, 1621, 2926
TaqII GACCGA 3 cut(s) 820, 1417, 2294
TatI WGTACW 6 cut(s) 1252, 2108, 2188, 2418, 2676, 2688
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 8 cut(s) 912, 1094, 1285, 1582, 1943, 2090, 2327, 2854
TscAI CASTG 9 cut(s) 226, 751, 1093, 1208, 2077, 2243, 2471, 2758, 2773
TseFI GTSAC 6 cut(s) 109, 431, 746, 2460, 2764, 2781
TseI GCWGC 8 cut(s) 54, 1160, 1272, 1816, 1970, 1973, 2819, 3032
Tsp45I GTSAC 6 cut(s) 109, 431, 746, 2460, 2764, 2781
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 9 cut(s) 226, 751, 1093, 1208, 2077, 2243, 2471, 2758, 2773
Van91I CCANNNNNTGG 2 cut(s) 1163, 2603
Vha464I CTTAAG 1 cut(s) 506
VpaK11BI GGWCC 4 cut(s) 513, 1051, 2306, 2606
VspI ATTAAT 1 cut(s) 1860
XagI CCTNNNNNAGG 2 cut(s) 2030, 2351
XapI RAATTY 6 cut(s) 295, 1033, 1765, 2377, 2485, 2744
XbaI TCTAGA 2 cut(s) 326, 2117
XceI RCATGY 2 cut(s) 359, 2826
XmiI GTMKAC 1 cut(s) 2683
ZrmI AGTACT 1 cut(s) 2678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.