Rh4BG448200

recombinational repair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003214
Physical Location & Seq
Reverse (-)
58635507 .. 58643429
7923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG448200.1

Sequence Viewer

Length: 2850 bp
ATGTTTGGTGATGTGGATCACCTTCATGATTTGTTTCAGTCCACTTGGAGATGCTGCTCTTTCTTACGTGGATGGATTGGCAGTTTAATATCGAAGCATTGCACAGATGTGACTGGCTTACAATCAAGAAACTATCTCTCTAAACTGGTTAAAGAAAGGGAGCATCAACTTTCAACCTTCATGTCTCAAACGGCGTATATAGATCTTAGTTCATCTGACAGTGATTTAGAAGAGATAGAGCCTGTTGGTAGAAGAACTCTTCCACCTTCGTTTTCTGCATCTGCTTCTGCTTCTGGTTCAAATTCAAGGAGTAAAGACTATGCTGACAAGTCTAGAAAGGTGCCTTCTAATGGAATATCACCTAATTATAATCACCACAGACAAGTGTTAGATAAGTTTCATCCCAGTTCAAGTGGTGACATAAGAGCATCAAATCAACAGGTTGCCCGAGCAGATAGTTCTACGTATTTCTCTCAAAATGGAAATGCCCTAAAGAGGACCCTTCCATTATCTATGCAGGCTCTAAACCCTGCAGTAGATAACAGGGCCCACAATCAGTTCCGTGATACCACCAACAAGGGTTTTATGAGAGACCATTCAATCAGGGGGAATGATGAACATATGTATGATAGAATGCCTCCATTTGTAAAGTCATCGTCTAACTCCCAATTTCCTAGTTCAAGTGAGCCTCAATACCTTCCGGGAATAGGTGAAGAAAGGGTTGCTGAAAGTGACGAGAGGCTGATATATCAAGCGGCACTAGAGGAACTTAATCAACCAAAACTTGAAGCTACTTTACCTGATGGTCTTTTGTCGGTCTCTCTTCTACGACATCAGAAAATTGCTTTGGCATGGATGCTTCAGAAGGAAACCAGAAGCTTGCATTGTCTAGGTGGAATCTTAGCTGATGATCAGGGCCTTGGTAAGACAATCTCAATGATTGCACTTATACAAATGCAGAGGTCTTTGCAATCGAAGTCAAAACCTGAACACTTGGACAATAAAACTGAAGCTTTGAATTTGGATGATGATGAGGACCATGGTGGTTGCGGTTTGGATAAAGTCAACAAGACTGAAGAATCTGATCTTAAATCAACTCCAGAAGCTAGTACCTCTGCACAGCCATTCAAAAAGAAGAGGCCAGCAGCTGGTACATTGGTGGTTTGTCCAGCAAGTGTTCTTCGACAGTGGGCTAGGGAGCTGGATGAGAAGGTTGCAGAGGAAGCAAAATTGTCTGTACTTGTTTATCATGGAGGCAGCAGAACAAGGAATCCCGAAGAACTTGCTGGCTATGATGTGGTTCTCACTACATATGCTATTGTAACTAATGAAGTCCCAAAACAACCTTTAGTTGATGAGGATGAGGGGGATGAAAAAAATGTGGAAAAGTATGGATTATCTTCTGATTTTTCTGTCAACAAGAAGAGGAAAAAGGCTTCTAATGTTAGTAAGAAGGGAAAGAAAGGTAGGAAAGGATTTGACACTTCCCCTTTTGACTGTGGTTCTGGGCCACTTGCAAGGGTCGGTTGGTTTAGGGTGATACTAGATGAAGCGCAAACCATTAAGAATCACAGAACTCAAGTGGCTAGGGCCTGCTGTAGCCTTCGAGCCAAAAGAAGATGGTGTCTATCTGGTACACCAATACAAAATGCAATTGATGATTTATACAGTTACTTCAGATTTCTGAAATATGATCCTTATGCTGTGTATAAATCATTTTACACTACCATTAAGGTTCCAATATCCAGAAATTCACTCCAAGGTTACAAGAAGCTCCAAGCTGTTCTGAGAGCTATTATGCTGCGCCGGACAAAAGGAACAATGATTGATGGGCAACCTATAATTAATTTACCACCAAAAACAATTAACCTGAGTAAAGTGGAGTTCTCGTCTGAGGAGAGGGCCTTCTATACCAAATTAGAAGCTGATTCACGCTCTCAATTCAAGGCATATGCTGCTGCTGGCACAGTAAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGCCTTCGGCAGGCTTGTGATCACCCTCTACTTGTTAAAGGATATGACACTGACTGCGTTGGGAAAGATTCTGTGGCTATGGCAAGTACACTTTCTAGAGAGATGCTTATCAATCTATTGAATGCCCTGGAAAGTTCCGAGGCCATTTGTCGTGTATGCAATGATGTACTTGAGAACCCTGTTGTTACTATGTGTGGCCATGTTTTCTGCCATCAGTGTGTGTCAGAAAATATGACTGGTGATGACAGTATGTGCCCTGCAATTGAATGCAAAAAACAAGTCGGTCCTGATGTTGTTTTCTCCGAATCCACTCTAATAAGTTGCCTCTCTAAGGATCTTGATGGTGGTTCAACGAATTCTCAGTTGATTGAGAAACCAGTAGTGGTACAGAATGAGTACACTTCATCTAAAGTCAGAGCTGTTATTGAGATAATACAGTCACACTGCAGGTTAAACAGCCCAAATTTGGAGCAATATAATTCTACAGGATGCAATAGAGACTCTTCTTTTGAAAATGAAAACCCGTATTCAGACATCAATGTTGTAAAGCGCACAACCGTAGTTTCAAACTCGCCAAATGATGGACCAATTAAAGCAATCATTTTCTCCCAATGGACTAAGATGTTGGATTTAGTTGAGAATGCAATGAACGAGTACTGTATACAATACAGAAGGCTTGATGGTACAATGACTCTGACATCAAGAGACAGGGCTGTCAAAGAATTCAACACTGATCCTGAGGTTTTGGTCCTTACCTTGATAATTGCTGAAATAGTTCATAACTGGTTAAATGTTTTCCTTCCCATCATCATTCTTTTTCTTATTCTTAAATGGGCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006304 GO:0006305 GO:0006306 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009292 GO:0009294 GO:0009605 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0009991 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019787 GO:0022402 GO:0030162 GO:0031047 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031668 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0032392 GO:0032434 GO:0032435 GO:0032446 GO:0032508 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042176 GO:0042177 GO:0042262 GO:0042623 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0044786 GO:0045003 GO:0045005 GO:0045861 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070035 GO:0070647 GO:0071103 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0140083 GO:0140096 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901799 GO:1902298 GO:1902969 GO:1903047 GO:1903050 GO:1903051 GO:1903362 GO:1903363 GO:1990505 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
ko04918 map04918
Pfam Domains
Protein Families
Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

949

Amino Acids

106.11

Weight (kDa)

7.71

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 278 - 678 1.1e-66 SNF2-related domain
zf-C3HC4_2 PF13923 719 - 755 5.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 719 - 755 7.6e-07 RING-type zinc-finger
zf-C3HC4 PF00097 719 - 755 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 719 - 755 4.1e-06 zinc finger of C3HC4-type, RING
Helicase_C PF00271 867 - 925 1e-05 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AasI GACNNNNNNGTC 1 cut(s) 2720
Acc36I ACCTGC 1 cut(s) 2445
AccB1I GGYRCC 1 cut(s) 340
AccB7I CCANNNNNTGG 2 cut(s) 1148, 2588
AccI GTMKAC 1 cut(s) 2668
AciI CCGC 2 cut(s) 755, 1050
AclWI GGATC 4 cut(s) 24, 1688, 2349, 2735
AcoI YGGCCR 1 cut(s) 2203
AcsI RAATTY 6 cut(s) 301, 1018, 1750, 2362, 2470, 2729
AcuI CTGAAG 4 cut(s) 845, 1029, 1095, 1660
AfiI CCNNNNNNNGG 8 cut(s) 350, 495, 707, 1148, 2017, 2338, 2473, 2588
AjnI CCWGG 1 cut(s) 2133
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AleI CACNNNNGTG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 1255, 1287
Alw26I GTCTC 5 cut(s) 189, 585, 823, 2499, 2706
AlwI GGATC 4 cut(s) 24, 1688, 2349, 2735
AlwNI CAGNNNCTG 1 cut(s) 1148
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 8 cut(s) 546, 916, 1139, 1508, 1590, 1902, 2148, 2203
ApaI GGGCCC 1 cut(s) 550
ApeKI GCWGC 6 cut(s) 54, 1145, 1257, 1801, 1955, 1958
ApoI RAATTY 6 cut(s) 301, 1018, 1750, 2362, 2470, 2729
ArsI GACNNNNNNTTYG 4 cut(s) 2271, 2303, 2498, 2530
AseI ATTAAT 1 cut(s) 1845
Asp700I GAANNNNTTC 1 cut(s) 2781
AspLEI GCGC 4 cut(s) 1555, 1806, 2010, 2559
AsuC2I CCSGG 1 cut(s) 702
AsuHPI GGTGA 9 cut(s) 11, 20, 351, 365, 428, 722, 1549, 2021, 2258
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 5 cut(s) 498, 1036, 2291, 2591, 2755
AxyI CCTNAGG 1 cut(s) 2745
BaeGI GKGCMC 2 cut(s) 550, 2264
BaeI ACNNNNGTAYC 2 cut(s) 1143, 1176
BalI TGGCCA 1 cut(s) 2205
BanI GGYRCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 550
BarI GAAGNNNNNNTAC 2 cut(s) 780, 812
BbvI GCAGC 6 cut(s) 41, 1157, 1269, 1788, 1942, 1945
BccI CCATC 9 cut(s) 66, 797, 1614, 1823, 2226, 2342, 2582, 2681, 2819
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 1265, 1299
BciT130I CCWGG 1 cut(s) 2135
BclI TGATCA 2 cut(s) 910, 2026
BcnI CCSGG 1 cut(s) 702
BcoDI GTCTC 5 cut(s) 189, 585, 823, 2499, 2706
BfaI CTAG 9 cut(s) 333, 675, 761, 890, 1107, 1194, 1544, 1587, 2103
BfmI CTRYAG 4 cut(s) 531, 1597, 2452, 2490
BfuAI ACCTGC 1 cut(s) 2445
BglII AGATCT 1 cut(s) 202
BisI GCNGC 7 cut(s) 55, 756, 1146, 1258, 1802, 1956, 1959
BlsI GCNGC 7 cut(s) 56, 757, 1147, 1259, 1803, 1957, 1960
BmcAI AGTACT 1 cut(s) 2663
Bme1390I CCNGG 2 cut(s) 702, 2135
Bme18I GGWCC 5 cut(s) 498, 1036, 2291, 2591, 2755
BmeT110I CYCGRG 1 cut(s) 447
BmiI GGNNCC 4 cut(s) 342, 500, 548, 1737
BmrFI CCNGG 2 cut(s) 702, 2135
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 8 cut(s) 41, 172, 287, 437, 846, 1989, 2100, 2486
BmuI ACTGGG 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 1083
BpuEI CTTGAG 2 cut(s) 1563, 2198
BpuMI CCSGG 1 cut(s) 702
BsaAI YACGTR 2 cut(s) 68, 465
BsaBI GATNNNNATC 2 cut(s) 15, 2114
BsaI GGTCTC 2 cut(s) 585, 823
BsaJI CCNNGG 5 cut(s) 919, 1039, 1759, 2133, 2145
BsaXI ACNNNNNCTCC 2 cut(s) 1874, 1904
Bsc4I CCNNNNNNNGG 8 cut(s) 350, 495, 707, 1148, 2017, 2338, 2473, 2588
Bse1I ACTGG 6 cut(s) 118, 150, 405, 2248, 2384, 2795
Bse21I CCTNAGG 1 cut(s) 2745
Bse3DI GCAATG 3 cut(s) 97, 2173, 2658
Bse8I GATNNNNATC 2 cut(s) 15, 2114
BseBI CCWGG 1 cut(s) 2135
BseDI CCNNGG 5 cut(s) 919, 1039, 1759, 2133, 2145
BseGI GGATG 8 cut(s) 77, 400, 861, 1030, 1210, 1366, 1375, 2501
BseJI GATNNNNATC 2 cut(s) 15, 2114
BseLI CCNNNNNNNGG 8 cut(s) 350, 495, 707, 1148, 2017, 2338, 2473, 2588
BseMI GCAATG 3 cut(s) 97, 2173, 2658
BseMII CTCAG 5 cut(s) 1778, 1862, 1884, 2381, 2736
BseNI ACTGG 6 cut(s) 118, 150, 405, 2248, 2384, 2795
BseRI GAGGAG 1 cut(s) 1910
BseSI GKGCMC 2 cut(s) 550, 2264
BseXI GCAGC 6 cut(s) 41, 1157, 1269, 1788, 1942, 1945
BsgI GTGCAG 1 cut(s) 1101
BshFI GGCC 8 cut(s) 548, 918, 1141, 1510, 1592, 1904, 2150, 2205
BshNI GGYRCC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 2 cut(s) 701, 1807
BslFI GGGAC 1 cut(s) 1319
BslI CCNNNNNNNGG 8 cut(s) 350, 495, 707, 1148, 2017, 2338, 2473, 2588
BsmAI GTCTC 5 cut(s) 189, 585, 823, 2499, 2706
BsmFI GGGAC 1 cut(s) 1319
BsmI GAATGC 4 cut(s) 639, 2134, 2279, 2653
BsnI GGCC 8 cut(s) 548, 918, 1141, 1510, 1592, 1904, 2150, 2205
Bso31I GGTCTC 2 cut(s) 585, 823
BsoBI CYCGRG 1 cut(s) 447
Bsp120I GGGCCC 1 cut(s) 546
Bsp1286I GDGCHC 2 cut(s) 550, 2264
Bsp143I GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
Bsp19I CCATGG 1 cut(s) 1039
BspACI CCGC 2 cut(s) 755, 1050
BspANI GGCC 8 cut(s) 548, 918, 1141, 1510, 1592, 1904, 2150, 2205
BspCNI CTCAG 5 cut(s) 1779, 1863, 1885, 2380, 2737
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 342, 500, 548, 1737
BspMAI CTGCAG 2 cut(s) 535, 2456
BspMI ACCTGC 1 cut(s) 2445
BspPI GGATC 4 cut(s) 24, 1688, 2349, 2735
BspT107I GGYRCC 1 cut(s) 340
BspTNI GGTCTC 2 cut(s) 585, 823
BsrDI GCAATG 3 cut(s) 97, 2173, 2658
BsrI ACTGG 6 cut(s) 118, 150, 405, 2248, 2384, 2795
BssECI CCNNGG 5 cut(s) 919, 1039, 1759, 2133, 2145
BssMI GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
BssNAI GTATAC 1 cut(s) 2669
BssT1I CCWWGG 3 cut(s) 919, 1039, 1759
Bst1107I GTATAC 1 cut(s) 2669
Bst2UI CCWGG 1 cut(s) 2135
Bst4CI ACNGT 9 cut(s) 221, 1188, 1499, 1670, 1969, 2255, 2445, 2566, 2666
Bst6I CTCTTC 6 cut(s) 225, 264, 828, 1130, 1418, 2515
BstAPI GCANNNNNTGC 1 cut(s) 1955
BstBAI YACGTR 2 cut(s) 68, 465
BstC8I GCNNGC 7 cut(s) 519, 881, 1143, 1288, 1594, 1963, 2019
BstDEI CTNAG 9 cut(s) 206, 901, 1787, 1871, 1893, 2337, 2367, 2625, 2745
BstDSI CCRYGG 1 cut(s) 1039
BstENI CCTNNNNNAGG 2 cut(s) 2015, 2336
BstF5I GGATG 8 cut(s) 77, 400, 861, 1030, 1210, 1366, 1375, 2501
BstHHI GCGC 4 cut(s) 1555, 1806, 2010, 2559
BstKTI GATC 8 cut(s) 19, 205, 913, 1087, 1696, 2029, 2344, 2743
BstMAI GTCTC 5 cut(s) 189, 585, 823, 2499, 2706
BstMBI GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
BstMWI GCNNNNNNNGC 3 cut(s) 1223, 1955, 2014
BstNI CCWGG 1 cut(s) 2135
BstSCI CCNGG 2 cut(s) 700, 2133
BstSFI CTRYAG 4 cut(s) 531, 1597, 2452, 2490
BstSLI GKGCMC 2 cut(s) 550, 2264
BstSNI TACGTA 1 cut(s) 465
BstV1I GCAGC 6 cut(s) 41, 1157, 1269, 1788, 1942, 1945
BstX2I RGATCY 2 cut(s) 202, 2341
BstYI RGATCY 2 cut(s) 202, 2341
BstZ17I GTATAC 1 cut(s) 2669
Bsu36I CCTNAGG 1 cut(s) 2745
BsuRI GGCC 8 cut(s) 548, 918, 1141, 1510, 1592, 1904, 2150, 2205
BtgI CCRYGG 1 cut(s) 1039
BtsCI GGATG 8 cut(s) 77, 400, 861, 1030, 1210, 1366, 1375, 2501
BtsI GCAGTG 1 cut(s) 2449
BtsIMutI CAGTG 6 cut(s) 226, 1193, 2055, 2228, 2449, 2736
BveI ACCTGC 1 cut(s) 2445
Cac8I GCNNGC 7 cut(s) 519, 881, 1143, 1288, 1594, 1963, 2019
CaiI CAGNNNCTG 1 cut(s) 1148
CciI TCATGA 1 cut(s) 25
CfoI GCGC 4 cut(s) 1555, 1806, 2010, 2559
CviAII CATG 6 cut(s) 26, 181, 852, 1040, 1250, 2207
DdeI CTNAG 9 cut(s) 206, 901, 1787, 1871, 1893, 2337, 2367, 2625, 2745
DpnI GATC 8 cut(s) 18, 204, 912, 1086, 1695, 2028, 2343, 2742
DpnII GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
DrdI GACNNNNNNGTC 1 cut(s) 2720
DseDI GACNNNNNNGTC 1 cut(s) 2720
EaeI YGGCCR 1 cut(s) 2203
Eam1104I CTCTTC 6 cut(s) 225, 264, 828, 1130, 1418, 2515
EarI CTCTTC 6 cut(s) 225, 264, 828, 1130, 1418, 2515
Eco105I TACGTA 1 cut(s) 465
Eco130I CCWWGG 3 cut(s) 919, 1039, 1759
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 2 cut(s) 585, 823
Eco47I GGWCC 5 cut(s) 498, 1036, 2291, 2591, 2755
Eco57I CTGAAG 4 cut(s) 845, 1029, 1095, 1660
Eco81I CCTNAGG 1 cut(s) 2745
Eco88I CYCGRG 1 cut(s) 447
EcoNI CCTNNNNNAGG 2 cut(s) 2015, 2336
EcoO109I RGGNCCY 5 cut(s) 498, 546, 916, 1590, 1902
EcoRI GAATTC 2 cut(s) 2362, 2729
EcoRII CCWGG 1 cut(s) 2133
EcoT14I CCWWGG 3 cut(s) 919, 1039, 1759
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 3 cut(s) 919, 1039, 1759
FaeI CATG 6 cut(s) 29, 184, 855, 1043, 1253, 2210
FaqI GGGAC 1 cut(s) 1319
FatI CATG 6 cut(s) 25, 180, 851, 1039, 1249, 2206
FauNDI CATATG 3 cut(s) 621, 1312, 1951
FbaI TGATCA 2 cut(s) 910, 2026
FblI GTMKAC 1 cut(s) 2668
Fnu4HI GCNGC 7 cut(s) 55, 756, 1146, 1258, 1802, 1956, 1959
FokI GGATG 8 cut(s) 84, 387, 868, 1037, 1217, 1373, 1382, 2508
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 7 cut(s) 55, 756, 1146, 1258, 1802, 1956, 1959
FspBI CTAG 9 cut(s) 333, 675, 761, 890, 1107, 1194, 1544, 1587, 2103
GlaI GCGC 4 cut(s) 1554, 1805, 2009, 2558
GluI GCNGC 7 cut(s) 55, 756, 1146, 1258, 1802, 1956, 1959
GsuI CTGGAG 1 cut(s) 1083
HaeIII GGCC 8 cut(s) 548, 918, 1141, 1510, 1592, 1904, 2150, 2205
HapII CCGG 2 cut(s) 701, 1807
HhaI GCGC 4 cut(s) 1555, 1806, 2010, 2559
Hin1II CATG 6 cut(s) 29, 184, 855, 1043, 1253, 2210
Hin6I GCGC 4 cut(s) 1553, 1804, 2008, 2557
HinP1I GCGC 4 cut(s) 1553, 1804, 2008, 2557
HincII GTYRAC 2 cut(s) 1066, 1417
HindII GTYRAC 2 cut(s) 1066, 1417
HindIII AAGCTT 2 cut(s) 877, 1011
HinfI GANTC 9 cut(s) 897, 1079, 1270, 1567, 1928, 2075, 2312, 2507, 2698
HpaII CCGG 2 cut(s) 701, 1807
HphI GGTGA 9 cut(s) 11, 20, 351, 365, 428, 722, 1549, 2021, 2258
Hpy166II GTNNAC 7 cut(s) 42, 1066, 1417, 1637, 2096, 2406, 2669
Hpy8I GTNNAC 7 cut(s) 42, 1066, 1417, 1637, 2096, 2406, 2669
HpyCH4III ACNGT 9 cut(s) 221, 1188, 1499, 1670, 1969, 2255, 2445, 2566, 2666
HpyCH4IV ACGT 2 cut(s) 67, 464
HpyF10VI GCNNNNNNNGC 3 cut(s) 1223, 1955, 2014
HpyF3I CTNAG 9 cut(s) 206, 901, 1787, 1871, 1893, 2337, 2367, 2625, 2745
HpySE526I ACGT 2 cut(s) 67, 464
Hsp92II CATG 6 cut(s) 29, 184, 855, 1043, 1253, 2210
HspAI GCGC 4 cut(s) 1553, 1804, 2008, 2557
Ksp22I TGATCA 2 cut(s) 910, 2026
Kzo9I GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
LmnI GCTCC 4 cut(s) 160, 1198, 1779, 2476
Lsp1109I GCAGC 6 cut(s) 41, 1157, 1269, 1788, 1942, 1945
LweI GCATC 8 cut(s) 41, 172, 287, 437, 846, 1989, 2100, 2486
MaeI CTAG 9 cut(s) 333, 675, 761, 890, 1107, 1194, 1544, 1587, 2103
MaeII ACGT 2 cut(s) 67, 464
MaeIII GTNAC 8 cut(s) 109, 416, 731, 1321, 1670, 1763, 2191, 2445
MalI GATC 8 cut(s) 18, 204, 912, 1086, 1695, 2028, 2343, 2742
MboI GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
MfeI CAATTG 2 cut(s) 1653, 2268
MflI RGATCY 2 cut(s) 202, 2341
MhlI GDGCHC 2 cut(s) 550, 2264
MlsI TGGCCA 1 cut(s) 2205
MluNI TGGCCA 1 cut(s) 2205
MlyI GAGTC 2 cut(s) 2501, 2692
MmeI TCCRAC 1 cut(s) 2613
Mox20I TGGCCA 1 cut(s) 2205
MroXI GAANNNNTTC 1 cut(s) 2781
MscI TGGCCA 1 cut(s) 2205
MslI CAYNNNNRTG 4 cut(s) 24, 107, 624, 2223
Msp20I TGGCCA 1 cut(s) 2205
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 2 cut(s) 701, 1807
MspR9I CCNGG 2 cut(s) 702, 2135
MunI CAATTG 2 cut(s) 1653, 2268
Mva1269I GAATGC 4 cut(s) 639, 2134, 2279, 2653
MvaI CCWGG 1 cut(s) 2135
MwoI GCNNNNNNNGC 3 cut(s) 1223, 1955, 2014
NciI CCSGG 1 cut(s) 702
NcoI CCATGG 1 cut(s) 1039
NdeI CATATG 3 cut(s) 621, 1312, 1951
NdeII GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
NlaIII CATG 6 cut(s) 29, 184, 855, 1043, 1253, 2210
NlaIV GGNNCC 4 cut(s) 342, 500, 548, 1737
NmuCI GTSAC 4 cut(s) 109, 416, 731, 2445
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 25
PctI GAATGC 4 cut(s) 639, 2134, 2279, 2653
PdmI GAANNNNTTC 1 cut(s) 2781
PfeI GAWTC 7 cut(s) 897, 1079, 1270, 1567, 1928, 2075, 2312
PflMI CCANNNNNTGG 2 cut(s) 1148, 2588
PfoI TCCNGGA 1 cut(s) 700
PkrI GCNGC 7 cut(s) 56, 757, 1147, 1259, 1803, 1957, 1960
PleI GAGTC 2 cut(s) 2501, 2692
PpsI GAGTC 2 cut(s) 2501, 2692
Ppu21I YACGTR 2 cut(s) 68, 465
PpuMI RGGWCCY 1 cut(s) 498
PshBI ATTAAT 1 cut(s) 1845
PsiI TTATAA 1 cut(s) 369
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 2133
PspGI CCWGG 1 cut(s) 2133
PspN4I GGNNCC 4 cut(s) 342, 500, 548, 1737
PspOMI GGGCCC 1 cut(s) 546
PspPPI RGGWCCY 1 cut(s) 498
PstI CTGCAG 2 cut(s) 535, 2456
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 2 cut(s) 202, 2341
PvuII CAGCTG 1 cut(s) 1148
RseI CAYNNNNRTG 4 cut(s) 24, 107, 624, 2223
SatI GCNGC 7 cut(s) 55, 756, 1146, 1258, 1802, 1956, 1959
Sau3AI GATC 8 cut(s) 16, 202, 910, 1084, 1693, 2026, 2341, 2740
ScaI AGTACT 1 cut(s) 2663
SchI GAGTC 2 cut(s) 2501, 2692
ScrFI CCNGG 2 cut(s) 702, 2135
SduI GDGCHC 2 cut(s) 550, 2264
SfaNI GCATC 8 cut(s) 41, 172, 287, 437, 846, 1989, 2100, 2486
SfcI CTRYAG 4 cut(s) 531, 1597, 2452, 2490
SinI GGWCC 5 cut(s) 498, 1036, 2291, 2591, 2755
SmiMI CAYNNNNRTG 4 cut(s) 24, 107, 624, 2223
SmlI CTYRAG 2 cut(s) 1578, 2177
SmoI CTYRAG 2 cut(s) 1578, 2177
SnaBI TACGTA 1 cut(s) 465
SsiI CCGC 2 cut(s) 755, 1050
SspI AATATT 1 cut(s) 1990
SspMI CTAG 9 cut(s) 333, 675, 761, 890, 1107, 1194, 1544, 1587, 2103
StyD4I CCNGG 2 cut(s) 700, 2133
StyI CCWWGG 3 cut(s) 919, 1039, 1759
TaaI ACNGT 9 cut(s) 221, 1188, 1499, 1670, 1969, 2255, 2445, 2566, 2666
TaiI ACGT 2 cut(s) 70, 467
TaqI TCGA 4 cut(s) 92, 974, 1183, 1606
TaqII GACCGA 2 cut(s) 805, 2279
TatI WGTACW 5 cut(s) 1237, 2093, 2173, 2403, 2661
TauI GCSGC 1 cut(s) 758
TfiI GAWTC 7 cut(s) 897, 1079, 1270, 1567, 1928, 2075, 2312
TscAI CASTG 6 cut(s) 226, 1193, 2062, 2228, 2456, 2743
TseFI GTSAC 4 cut(s) 109, 416, 731, 2445
TseI GCWGC 6 cut(s) 54, 1145, 1257, 1801, 1955, 1958
Tsp45I GTSAC 4 cut(s) 109, 416, 731, 2445
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 6 cut(s) 226, 1193, 2062, 2228, 2456, 2743
Van91I CCANNNNNTGG 2 cut(s) 1148, 2588
VpaK11BI GGWCC 5 cut(s) 498, 1036, 2291, 2591, 2755
VspI ATTAAT 1 cut(s) 1845
XagI CCTNNNNNAGG 2 cut(s) 2015, 2336
XapI RAATTY 6 cut(s) 301, 1018, 1750, 2362, 2470, 2729
XbaI TCTAGA 2 cut(s) 332, 2102
XmiI GTMKAC 1 cut(s) 2668
XmnI GAANNNNTTC 1 cut(s) 2781
XspI CTAG 9 cut(s) 333, 675, 761, 890, 1107, 1194, 1544, 1587, 2103
ZrmI AGTACT 1 cut(s) 2663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.