Rroxscaffold_5G00387400

recombinational repair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003214
Physical Location & Seq
Reverse (-)
66058990 .. 66066764
7775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00387400.1

Sequence Viewer

Length: 2883 bp
ATGTCTCAAACGGCGTATATAGATCTCAGTTCATCTGACAGTGATTTAGAAGAGATAGAGCCTGTTGGTAGAAGAACCCTTCCACCTTCGTTTTCTGCATCTGCTTCTGGTTCAAATTCAAGGAGTAAAGACTATGCTGACAAGTCTAGAAAGGTGCCTTCTCCTAGAAGAGCACATGCTTCAAATGGAATATCTCCTAATTATAATCACCACAGACAAGTGTTAGATAAGTTTCATCCCAGTTCAAGTGGTGACATAAGAGCCCCAAATCGACAGGTTGCCCGCGCAGATAGTTCTACGTATTTCTCTCAAAATGGAAATGCCCTAAAGAGGACCCTTCCATTATCTATGCAGGCTCTAAACCCTGCAGCAGATAACAGGGCCCACAATCAGTTCCGTGATACCACCAACAAGGGTTTTATGAGAGACCATTCAATCAGGGGGAATGATGAACATATGTATGATAGAATGCCTCCATTTGTAAAGTCCTTGTCTAACTCCCAATTTCCTAGTTCAAGTGAGCCTCAATACCTTCAGGGAATAGGTGAAGAAAGGGTTGCTGAAAGTGACGAGAGGCTGATATATCAAGCGGCACTAGAGGAACTTAATCAACCAAAACTTGAAGCTACGTTACCTGATGGTCTTTTGTCGGTCTCTCTTCTACGACATCAGAAAATTGCTTTGGCATGGATGCTTCAGAAGGAAACCAGAAGCTTGCATTGTCTAGGTGGAATCTTAGCTGATGATCAGGGCCTTGGTAAGACAATCTCAATGATTGCACTTATACAAATGCAGAGGTCTTTGCAATCGAAGTCAAAACCTGAACACTTGGACAATAAAACTGAAGCTTTGAATTTGGATGATGATGAGGACCATGGTGGTTGTGGTTTGGATAAAGTCAACAAGACTGAAGAATCTGATCTTAAATCAACTCCAGAAGCTAGTACCTCTGCACAGCCATTCAAAAAGAAGAGGCCAGCAGCTGGTACATTGGTGGTTTGTCCAGCAAGTGTTCTTCGACAGTGGGCTAGGGAGCTGGATGAGAAGGTTGCAGAGGAAGCAAAATTGTCTGTACTTGTTTATCATGGAGGCAGCAGAACAAGGAATCCCGAAGAACTTGCTGGCTATGATGTGGTTCTCACTACATATGCTATTGTAACTAATGAAGTCCCAAAACAACCTTTAGTTGATGAGGATGAGGCGGATGAAAAAAATGTGGAAAAGTATGGATTATCTTCTGATTTTTCTGTCAACAAGAAGAGGAAAAAGGCTTCTATTGTTAGTAAGAAGGGAAAGAAAGGTAGGAAAGGATTTGACACTTCCTCTTTTGACTGTGGTTCTGGGCCACTTGCAAGGGTCGGTTGGTTTAGGGTGATACTAGATGAAGCGCAAACCATTAAGAATCACAGAACTCAAGTGGCTAGGGCCTGCTGTAGCCTTCGAGCCAAAAGAAGATGGTGTCTATCTGGTACACCAATACAAAATGCAATTGATGATTTATACAGTTACTTCAGATTTCTGAAATATGATCCTTATGCTGTGTATAAATCATTTTACACTACCATTAAGGTTCCAATATCCAGAAATTCACTTCAAGGTTACAAGAAGCTCCAAGCTGTTCTGAGAGCTATTATGCTGCGCCGGACAAAAGGAACAATGATAGATGGGCAACCTATAATTAATTTACCACCAAAAACAATTAACCTGAGTAAAGTGGAGTTCTCGTCTGAGGAGAGGGCCTTCTATACCAAATTAGAAGCTGATTCACGCTCTCAATTCAAGGCATATGCTGCTGCTGGCACAGTAAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGCCTTCGGCAGGCTTGTGATCACCCTCTACTTGTTAAAGGATATGACACTGACTGCGTTGGGAAAGATTCTGTGGCTATGGCAAGTACACTTTCTAGAGAGATGCTTATCAATCTATTGGATGCCCTGGAAAGTTCCGAGGCCATTTGTTGTGTATGCAATGATGTACTTGAGAACCCTGTTGTTACTATGTGTGGCCATGTTTTTTGCCATCAGTGTGTGTCAGAAAATATGACTGGTGATGACAGTATGTGCCCTGCAATTGAATGCAAAAAACAAGTCGGTCCTGATGTTGTTTTCTCTAAATCCACTATAATAAGTTGCCTCTGTAAGGATCTTGATGGTGGTTCAACGAATTCTCAGTTGATTGATAAACCAGTAGTGGTACAGAATGAGTACACTTCATCTAAAGTCAGAGCTGTTATCGAGATAATACAGTCACACTGCAAATTAAACAGCCCAAATTTGGAGCAATATATTTCTACAGGATGCAATAGAGACTCTTTTGCAGATTCAGACATCAATGTTGTGAAGCGCACAACCGTAGTTTCAAGCTCGCCAAATGATGGACCAATTAAAGCAATTATTTTCTCCCAATGGACTAAGATGTTGGATTTAGTTGAGAATGCAATGAACGAGTACTGTATACAATACAGAAGGCTTGATGGTACAATGACTCTGACATCAAGAGACAGGGCTGTCAAAGAATTCAACACTGATCCTGAGGTCACCGTTATGCTTATGTCACTAAAGGCAGGAAACCTTGGTCTAAACATGGTTGCTGCATGTCATGTTATCCTTTTGGATCTTTGGTGGAATCCAACAACTGAGGATCAAGCTGTCGATAGGGCACATAGAATTGGACAAACCCGGCCTGTTACTGTAACTCGACTTACTATTAAGGATACAGTAGAGGACAGGATATTAGCTCTACAGGATGAGAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGATAATAGTGGGGGCTCTGCAGCTCGTCTGACGGTTGAGGATCTCAGATACCTATTTATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006304 GO:0006305 GO:0006306 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009292 GO:0009294 GO:0009605 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0009991 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019787 GO:0022402 GO:0030162 GO:0031047 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031668 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0032392 GO:0032434 GO:0032435 GO:0032446 GO:0032508 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042176 GO:0042177 GO:0042262 GO:0042623 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0044786 GO:0045003 GO:0045005 GO:0045861 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070035 GO:0070647 GO:0071103 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0140083 GO:0140096 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901799 GO:1902298 GO:1902969 GO:1903047 GO:1903050 GO:1903051 GO:1903362 GO:1903363 GO:1990505 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
ko04918 map04918
Pfam Domains
Protein Families
Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

960

Amino Acids

106.78

Weight (kDa)

8.04

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 223 - 623 1.1e-66 SNF2-related domain
zf-C3HC4_2 PF13923 664 - 700 1.2e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 664 - 700 1e-05 RING-type zinc-finger
Helicase_C PF00271 807 - 902 1.4e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AasI GACNNNNNNGTC 1 cut(s) 2540
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 2 cut(s) 983, 2408
AccI GTMKAC 1 cut(s) 2488
AccII CGCG 1 cut(s) 285
AciI CCGC 3 cut(s) 283, 590, 1202
AclWI GGATC 6 cut(s) 1523, 2184, 2555, 2655, 2682, 2865
AcoI YGGCCR 1 cut(s) 2038
AcsI RAATTY 6 cut(s) 115, 853, 1585, 2197, 2305, 2549
AcuI CTGAAG 5 cut(s) 518, 680, 864, 930, 1495
AfiI CCNNNNNNNGG 7 cut(s) 330, 983, 1852, 2173, 2308, 2408, 2875
AjnI CCWGG 1 cut(s) 1968
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AloI GAACNNNNNNTCC 2 cut(s) 1090, 1122
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 5 cut(s) 9, 420, 658, 2334, 2526
AlwI GGATC 6 cut(s) 1523, 2184, 2555, 2655, 2682, 2865
AlwNI CAGNNNCTG 1 cut(s) 983
AoxI GGCC 9 cut(s) 381, 751, 974, 1343, 1425, 1737, 1983, 2038, 2714
ApaI GGGCCC 1 cut(s) 385
ApeKI GCWGC 8 cut(s) 368, 980, 1092, 1636, 1790, 1793, 2624, 2837
ApoI RAATTY 6 cut(s) 115, 853, 1585, 2197, 2305, 2549
ArsI GACNNNNNNTTYG 2 cut(s) 2106, 2138
AseI ATTAAT 1 cut(s) 1680
AspLEI GCGC 5 cut(s) 287, 1390, 1641, 1845, 2379
AsuC2I CCSGG 1 cut(s) 2713
AsuHPI GGTGA 8 cut(s) 200, 263, 557, 1384, 1856, 2093, 2563, 2825
AvaII GGWCC 4 cut(s) 333, 871, 2126, 2411
AxyI CCTNAGG 1 cut(s) 2565
BaeGI GKGCMC 3 cut(s) 385, 2099, 2695
BaeI ACNNNNGTAYC 2 cut(s) 978, 1011
BalI TGGCCA 1 cut(s) 2040
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 3 cut(s) 265, 385, 2834
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 8 cut(s) 380, 992, 1104, 1623, 1777, 1780, 2611, 2849
BccI CCATC 7 cut(s) 632, 1449, 1658, 2061, 2177, 2402, 2501
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 1100, 1134
BciT130I CCWGG 1 cut(s) 1970
BciVI GTATCC 1 cut(s) 2740
BclI TGATCA 2 cut(s) 745, 1861
BcnI CCSGG 1 cut(s) 2713
BcoDI GTCTC 5 cut(s) 9, 420, 658, 2334, 2526
BfmI CTRYAG 5 cut(s) 366, 1432, 2325, 2774, 2835
BfuI GTATCC 1 cut(s) 2740
BglII AGATCT 1 cut(s) 22
BisI GCNGC 9 cut(s) 369, 591, 981, 1093, 1637, 1791, 1794, 2625, 2838
BlsI GCNGC 9 cut(s) 370, 592, 982, 1094, 1638, 1792, 1795, 2626, 2839
BmcAI AGTACT 1 cut(s) 2483
Bme1390I CCNGG 2 cut(s) 1970, 2713
Bme18I GGWCC 4 cut(s) 333, 871, 2126, 2411
BmiI GGNNCC 4 cut(s) 156, 335, 383, 1572
BmrFI CCNGG 2 cut(s) 1970, 2713
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 7 cut(s) 107, 681, 1824, 1935, 1954, 2321, 2810
BmuI ACTGGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 918
BpuEI CTTGAG 2 cut(s) 1398, 2033
BpuMI CCSGG 1 cut(s) 2713
BsaAI YACGTR 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 1949
BsaI GGTCTC 2 cut(s) 420, 658
BsaJI CCNNGG 5 cut(s) 754, 874, 1968, 1980, 2605
BsaXI ACNNNNNCTCC 2 cut(s) 1709, 1739
Bsc4I CCNNNNNNNGG 7 cut(s) 330, 983, 1852, 2173, 2308, 2408, 2875
Bse1I ACTGG 3 cut(s) 240, 2083, 2219
Bse21I CCTNAGG 1 cut(s) 2565
Bse3DI GCAATG 2 cut(s) 2008, 2478
Bse8I GATNNNNATC 1 cut(s) 1949
BseBI CCWGG 1 cut(s) 1970
BseDI CCNNGG 5 cut(s) 754, 874, 1968, 1980, 2605
BseGI GGATG 9 cut(s) 235, 696, 865, 1045, 1201, 1210, 1969, 2336, 2785
BseJI GATNNNNATC 1 cut(s) 1949
BseLI CCNNNNNNNGG 7 cut(s) 330, 983, 1852, 2173, 2308, 2408, 2875
BseMI GCAATG 2 cut(s) 2008, 2478
BseMII CTCAG 8 cut(s) 40, 1613, 1697, 1719, 2216, 2556, 2661, 2875
BseNI ACTGG 3 cut(s) 240, 2083, 2219
BseRI GAGGAG 1 cut(s) 1745
BseSI GKGCMC 3 cut(s) 385, 2099, 2695
BseXI GCAGC 8 cut(s) 380, 992, 1104, 1623, 1777, 1780, 2611, 2849
BsgI GTGCAG 1 cut(s) 936
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 9 cut(s) 383, 753, 976, 1345, 1427, 1739, 1985, 2040, 2716
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 175
BsiSI CCGG 2 cut(s) 1642, 2713
BslFI GGGAC 1 cut(s) 1154
BslI CCNNNNNNNGG 7 cut(s) 330, 983, 1852, 2173, 2308, 2408, 2875
BsmAI GTCTC 5 cut(s) 9, 420, 658, 2334, 2526
BsmFI GGGAC 1 cut(s) 1154
BsmI GAATGC 3 cut(s) 474, 2114, 2473
BsnI GGCC 9 cut(s) 383, 753, 976, 1345, 1427, 1739, 1985, 2040, 2716
Bso31I GGTCTC 2 cut(s) 420, 658
Bsp120I GGGCCC 1 cut(s) 381
Bsp1286I GDGCHC 6 cut(s) 175, 265, 385, 2099, 2695, 2834
Bsp19I CCATGG 1 cut(s) 874
BspACI CCGC 3 cut(s) 283, 590, 1202
BspANI GGCC 9 cut(s) 383, 753, 976, 1345, 1427, 1739, 1985, 2040, 2716
BspCNI CTCAG 8 cut(s) 39, 1614, 1698, 1720, 2215, 2557, 2662, 2874
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 4 cut(s) 156, 335, 383, 1572
BspMAI CTGCAG 2 cut(s) 370, 2839
BspPI GGATC 6 cut(s) 1523, 2184, 2555, 2655, 2682, 2865
BspQI GCTCTTC 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 2 cut(s) 420, 658
BsrDI GCAATG 2 cut(s) 2008, 2478
BsrI ACTGG 3 cut(s) 240, 2083, 2219
BssECI CCNNGG 5 cut(s) 754, 874, 1968, 1980, 2605
BssNAI GTATAC 1 cut(s) 2489
BssT1I CCWWGG 3 cut(s) 754, 874, 2605
Bst1107I GTATAC 1 cut(s) 2489
Bst2UI CCWGG 1 cut(s) 1970
Bst6I CTCTTC 6 cut(s) 45, 163, 663, 965, 1253, 2780
BstAPI GCANNNNNTGC 1 cut(s) 1790
BstBAI YACGTR 1 cut(s) 300
BstC8I GCNNGC 9 cut(s) 283, 354, 716, 978, 1123, 1429, 1798, 1854, 2399
BstDSI CCRYGG 1 cut(s) 874
BstEII GGTNACC 1 cut(s) 2569
BstENI CCTNNNNNAGG 2 cut(s) 1850, 2171
BstF5I GGATG 9 cut(s) 235, 696, 865, 1045, 1201, 1210, 1969, 2336, 2785
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 5 cut(s) 287, 1390, 1641, 1845, 2379
BstMAI GTCTC 5 cut(s) 9, 420, 658, 2334, 2526
BstMWI GCNNNNNNNGC 3 cut(s) 1058, 1790, 1849
BstNI CCWGG 1 cut(s) 1970
BstNSI RCATGY 2 cut(s) 179, 2631
BstPI GGTNACC 1 cut(s) 2569
BstSCI CCNGG 2 cut(s) 1968, 2711
BstSFI CTRYAG 5 cut(s) 366, 1432, 2325, 2774, 2835
BstSLI GKGCMC 3 cut(s) 385, 2099, 2695
BstSNI TACGTA 1 cut(s) 300
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 8 cut(s) 380, 992, 1104, 1623, 1777, 1780, 2611, 2849
BstX2I RGATCY 4 cut(s) 22, 2176, 2647, 2857
BstYI RGATCY 4 cut(s) 22, 2176, 2647, 2857
BstZ17I GTATAC 1 cut(s) 2489
Bsu36I CCTNAGG 1 cut(s) 2565
BsuI GTATCC 1 cut(s) 2740
BsuRI GGCC 9 cut(s) 383, 753, 976, 1345, 1427, 1739, 1985, 2040, 2716
BtgI CCRYGG 1 cut(s) 874
BtsCI GGATG 9 cut(s) 235, 696, 865, 1045, 1201, 1210, 1969, 2336, 2785
BtsI GCAGTG 1 cut(s) 2284
BtsIMutI CAGTG 6 cut(s) 46, 1028, 1890, 2063, 2284, 2556
Cac8I GCNNGC 9 cut(s) 283, 354, 716, 978, 1123, 1429, 1798, 1854, 2399
CaiI CAGNNNCTG 1 cut(s) 983
CfoI GCGC 5 cut(s) 287, 1390, 1641, 1845, 2379
CviAII CATG 8 cut(s) 176, 687, 875, 1085, 2042, 2617, 2628, 2633
DrdI GACNNNNNNGTC 1 cut(s) 2540
DseDI GACNNNNNNGTC 1 cut(s) 2540
EaeI YGGCCR 1 cut(s) 2038
Eam1104I CTCTTC 6 cut(s) 45, 163, 663, 965, 1253, 2780
EarI CTCTTC 6 cut(s) 45, 163, 663, 965, 1253, 2780
EciI GGCGGA 1 cut(s) 1217
Eco105I TACGTA 1 cut(s) 300
Eco130I CCWWGG 3 cut(s) 754, 874, 2605
Eco24I GRGCYC 3 cut(s) 265, 385, 2834
Eco31I GGTCTC 2 cut(s) 420, 658
Eco47I GGWCC 4 cut(s) 333, 871, 2126, 2411
Eco57I CTGAAG 5 cut(s) 518, 680, 864, 930, 1495
Eco81I CCTNAGG 1 cut(s) 2565
Eco91I GGTNACC 1 cut(s) 2569
EcoNI CCTNNNNNAGG 2 cut(s) 1850, 2171
EcoO109I RGGNCCY 5 cut(s) 333, 381, 751, 1425, 1737
EcoO65I GGTNACC 1 cut(s) 2569
EcoRI GAATTC 2 cut(s) 2197, 2549
EcoRII CCWGG 1 cut(s) 1968
EcoT14I CCWWGG 3 cut(s) 754, 874, 2605
EcoT38I GRGCYC 3 cut(s) 265, 385, 2834
ErhI CCWWGG 3 cut(s) 754, 874, 2605
FaeI CATG 8 cut(s) 179, 690, 878, 1088, 2045, 2620, 2631, 2636
FaqI GGGAC 1 cut(s) 1154
FatI CATG 8 cut(s) 175, 686, 874, 1084, 2041, 2616, 2627, 2632
FauI CCCGC 1 cut(s) 290
FauNDI CATATG 3 cut(s) 456, 1147, 1786
FbaI TGATCA 2 cut(s) 745, 1861
FblI GTMKAC 1 cut(s) 2488
Fnu4HI GCNGC 9 cut(s) 369, 591, 981, 1093, 1637, 1791, 1794, 2625, 2838
FokI GGATG 9 cut(s) 222, 703, 872, 1052, 1208, 1217, 1976, 2343, 2792
FriOI GRGCYC 3 cut(s) 265, 385, 2834
Fsp4HI GCNGC 9 cut(s) 369, 591, 981, 1093, 1637, 1791, 1794, 2625, 2838
GlaI GCGC 5 cut(s) 286, 1389, 1640, 1844, 2378
GluI GCNGC 9 cut(s) 369, 591, 981, 1093, 1637, 1791, 1794, 2625, 2838
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 9 cut(s) 383, 753, 976, 1345, 1427, 1739, 1985, 2040, 2716
HapII CCGG 2 cut(s) 1642, 2713
HhaI GCGC 5 cut(s) 287, 1390, 1641, 1845, 2379
Hin1II CATG 8 cut(s) 179, 690, 878, 1088, 2045, 2620, 2631, 2636
Hin6I GCGC 5 cut(s) 285, 1388, 1639, 1843, 2377
HinP1I GCGC 5 cut(s) 285, 1388, 1639, 1843, 2377
HincII GTYRAC 2 cut(s) 901, 1252
HindII GTYRAC 2 cut(s) 901, 1252
HindIII AAGCTT 2 cut(s) 712, 846
HpaII CCGG 2 cut(s) 1642, 2713
HphI GGTGA 8 cut(s) 200, 263, 557, 1384, 1856, 2093, 2563, 2825
Hpy166II GTNNAC 6 cut(s) 901, 1252, 1472, 1931, 2241, 2489
Hpy8I GTNNAC 6 cut(s) 901, 1252, 1472, 1931, 2241, 2489
HpyCH4IV ACGT 2 cut(s) 299, 629
HpyF10VI GCNNNNNNNGC 3 cut(s) 1058, 1790, 1849
HpySE526I ACGT 2 cut(s) 299, 629
Hsp92II CATG 8 cut(s) 179, 690, 878, 1088, 2045, 2620, 2631, 2636
HspAI GCGC 5 cut(s) 285, 1388, 1639, 1843, 2377
Ksp22I TGATCA 2 cut(s) 745, 1861
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 3 cut(s) 1033, 1614, 2311
Lsp1109I GCAGC 8 cut(s) 380, 992, 1104, 1623, 1777, 1780, 2611, 2849
LweI GCATC 7 cut(s) 107, 681, 1824, 1935, 1954, 2321, 2810
MaeII ACGT 2 cut(s) 299, 629
MfeI CAATTG 2 cut(s) 1488, 2103
MflI RGATCY 4 cut(s) 22, 2176, 2647, 2857
MhlI GDGCHC 6 cut(s) 175, 265, 385, 2099, 2695, 2834
MlsI TGGCCA 1 cut(s) 2040
MluNI TGGCCA 1 cut(s) 2040
MlyI GAGTC 2 cut(s) 2336, 2512
MmeI TCCRAC 2 cut(s) 2433, 2687
Mox20I TGGCCA 1 cut(s) 2040
MscI TGGCCA 1 cut(s) 2040
MslI CAYNNNNRTG 3 cut(s) 459, 2058, 2576
Msp20I TGGCCA 1 cut(s) 2040
MspA1I CMGCKG 1 cut(s) 983
MspI CCGG 2 cut(s) 1642, 2713
MspR9I CCNGG 2 cut(s) 1970, 2713
MunI CAATTG 2 cut(s) 1488, 2103
Mva1269I GAATGC 3 cut(s) 474, 2114, 2473
MvaI CCWGG 1 cut(s) 1970
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 3 cut(s) 1058, 1790, 1849
NciI CCSGG 1 cut(s) 2713
NcoI CCATGG 1 cut(s) 874
NdeI CATATG 3 cut(s) 456, 1147, 1786
NlaIII CATG 8 cut(s) 179, 690, 878, 1088, 2045, 2620, 2631, 2636
NlaIV GGNNCC 4 cut(s) 156, 335, 383, 1572
NmuCI GTSAC 5 cut(s) 251, 566, 2280, 2569, 2586
NspI RCATGY 2 cut(s) 179, 2631
PciSI GCTCTTC 1 cut(s) 163
PctI GAATGC 3 cut(s) 474, 2114, 2473
PfeI GAWTC 8 cut(s) 732, 914, 1105, 1402, 1763, 1910, 2354, 2659
PflMI CCANNNNNTGG 2 cut(s) 983, 2408
PkrI GCNGC 9 cut(s) 370, 592, 982, 1094, 1638, 1792, 1795, 2626, 2839
PleI GAGTC 2 cut(s) 2336, 2512
PpsI GAGTC 2 cut(s) 2336, 2512
Ppu21I YACGTR 1 cut(s) 300
PpuMI RGGWCCY 1 cut(s) 333
PshBI ATTAAT 1 cut(s) 1680
PsiI TTATAA 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 1968
PspEI GGTNACC 1 cut(s) 2569
PspGI CCWGG 1 cut(s) 1968
PspN4I GGNNCC 4 cut(s) 156, 335, 383, 1572
PspOMI GGGCCC 1 cut(s) 381
PspPPI RGGWCCY 1 cut(s) 333
PstI CTGCAG 2 cut(s) 370, 2839
PstNI CAGNNNCTG 1 cut(s) 983
PsuI RGATCY 4 cut(s) 22, 2176, 2647, 2857
PvuII CAGCTG 1 cut(s) 983
RseI CAYNNNNRTG 3 cut(s) 459, 2058, 2576
SapI GCTCTTC 1 cut(s) 163
SatI GCNGC 9 cut(s) 369, 591, 981, 1093, 1637, 1791, 1794, 2625, 2838
ScaI AGTACT 1 cut(s) 2483
SchI GAGTC 2 cut(s) 2336, 2512
ScrFI CCNGG 2 cut(s) 1970, 2713
SduI GDGCHC 6 cut(s) 175, 265, 385, 2099, 2695, 2834
SfaNI GCATC 7 cut(s) 107, 681, 1824, 1935, 1954, 2321, 2810
SfcI CTRYAG 5 cut(s) 366, 1432, 2325, 2774, 2835
SinI GGWCC 4 cut(s) 333, 871, 2126, 2411
SmiMI CAYNNNNRTG 3 cut(s) 459, 2058, 2576
SmlI CTYRAG 2 cut(s) 1413, 2012
SmoI CTYRAG 2 cut(s) 1413, 2012
SnaBI TACGTA 1 cut(s) 300
SsiI CCGC 3 cut(s) 283, 590, 1202
SspI AATATT 1 cut(s) 1825
StyD4I CCNGG 2 cut(s) 1968, 2711
StyI CCWWGG 3 cut(s) 754, 874, 2605
TaiI ACGT 2 cut(s) 302, 632
TaqI TCGA 7 cut(s) 271, 809, 1018, 1441, 2268, 2685, 2731
TaqII GACCGA 2 cut(s) 640, 2114
TatI WGTACW 5 cut(s) 1072, 1928, 2008, 2238, 2481
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 8 cut(s) 732, 914, 1105, 1402, 1763, 1910, 2354, 2659
TscAI CASTG 6 cut(s) 46, 1028, 1897, 2063, 2291, 2563
TseFI GTSAC 5 cut(s) 251, 566, 2280, 2569, 2586
TseI GCWGC 8 cut(s) 368, 980, 1092, 1636, 1790, 1793, 2624, 2837
Tsp45I GTSAC 5 cut(s) 251, 566, 2280, 2569, 2586
TspDTI ATGAA 8 cut(s) 21, 224, 465, 1179, 1221, 1398, 2235, 2489
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 6 cut(s) 46, 1028, 1897, 2063, 2291, 2563
Van91I CCANNNNNTGG 2 cut(s) 983, 2408
VpaK11BI GGWCC 4 cut(s) 333, 871, 2126, 2411
VspI ATTAAT 1 cut(s) 1680
XagI CCTNNNNNAGG 2 cut(s) 1850, 2171
XapI RAATTY 6 cut(s) 115, 853, 1585, 2197, 2305, 2549
XbaI TCTAGA 2 cut(s) 146, 1937
XceI RCATGY 2 cut(s) 179, 2631
XcmI CCANNNNNNNNNTGG 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 2488
ZrmI AGTACT 1 cut(s) 2483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.