Rorug04G0378000

recombinational repair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003214
Physical Location & Seq
Forward (+)
54891133 .. 54891486
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0378000.1

Sequence Viewer

Length: 351 bp
ATGGGTTTCAAAATGATCAAGAAACAAATCGAGCACTTCAAACTTTCAGACTACTACATCATTACTTCAGAATCCGCAGAAGCTCTAGATTGGTTCAGGTTCTGTACGTTGGCACAGACAGATATTGCAAGTCATACTAATTTGATAAGTGATAAGATCATGGGAAAGGGGAAAAAAGAGAGCAGGGGATCATCAATTCTGAGTCCCTTCACTCGGTGCTTCTTTGCCTCAGCTGGTACTGCCGATAAAAATGGAAGGGGCTCAAAAGCTGTACGGACGACTGGACCAGAGGCAACCATGGTTGCAGCTGCAGAGCACTTCTCTTCAGCCCACAAAGTTCGATACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006304 GO:0006305 GO:0006306 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009292 GO:0009294 GO:0009605 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0009991 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019787 GO:0022402 GO:0030162 GO:0031047 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031668 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0032392 GO:0032434 GO:0032435 GO:0032446 GO:0032508 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042176 GO:0042177 GO:0042262 GO:0042623 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0044786 GO:0045003 GO:0045005 GO:0045861 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070035 GO:0070647 GO:0071103 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0140083 GO:0140096 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901799 GO:1902298 GO:1902969 GO:1903047 GO:1903050 GO:1903051 GO:1903362 GO:1903363 GO:1990505 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
ko04918 map04918
Pfam Domains
Protein Families
Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

116

Amino Acids

12.83

Weight (kDa)

9.52

Isoelectric Point (pI)

22.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 196
AcuI CTGAAG 2 cut(s) 51, 309
AdeI CACNNNGTG 1 cut(s) 216
AfaI GTAC 3 cut(s) 106, 238, 273
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 10, 40
AluBI AGCT 4 cut(s) 83, 233, 269, 308
AluI AGCT 4 cut(s) 83, 233, 269, 308
Alw21I GWGCWC 2 cut(s) 36, 318
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 305, 308
AspS9I GGNCC 1 cut(s) 284
AvaII GGWCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 263
Bbv12I GWGCWC 2 cut(s) 36, 318
BbvCI CCTCAGC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 295, 317
BclI TGATCA 1 cut(s) 15
BfaI CTAG 2 cut(s) 86, 349
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 2 cut(s) 306, 309
BlsI GCNGC 2 cut(s) 307, 310
Bme18I GGWCC 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 305, 337
Bpu10I CCTNAGC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 191, 243
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 2 cut(s) 295, 317
BsiHKAI GWGCWC 2 cut(s) 36, 318
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 189
Bsp1286I GDGCHC 3 cut(s) 36, 263, 318
Bsp143I GATC 3 cut(s) 15, 156, 188
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 2 cut(s) 192, 242
BspMAI CTGCAG 1 cut(s) 313
BspPI GGATC 1 cut(s) 196
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 15, 156, 188
BssT1I CCWWGG 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 200, 229
BstDSI CCRYGG 1 cut(s) 297
BstKTI GATC 3 cut(s) 18, 159, 191
BstMBI GATC 3 cut(s) 15, 156, 188
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 295, 317
BtgI CCRYGG 1 cut(s) 297
CaiI CAGNNNCTG 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 284
Csp6I GTAC 3 cut(s) 105, 237, 272
CviAII CATG 2 cut(s) 160, 298
CviJI RGCY 6 cut(s) 83, 233, 261, 269, 308, 329
CviKI_1 RGCY 6 cut(s) 83, 233, 261, 269, 308, 329
CviQI GTAC 3 cut(s) 105, 237, 272
DdeI CTNAG 2 cut(s) 200, 229
DpnI GATC 3 cut(s) 17, 158, 190
DpnII GATC 3 cut(s) 15, 156, 188
DraIII CACNNNGTG 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 51, 309
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 163, 301
FaiI YATR 3 cut(s) 135, 161, 299
FaqI GGGAC 1 cut(s) 189
FatI CATG 2 cut(s) 159, 297
FbaI TGATCA 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 306, 309
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 306, 309
FspBI CTAG 2 cut(s) 86, 349
GluI GCNGC 2 cut(s) 306, 309
Hin1II CATG 2 cut(s) 163, 301
HinfI GANTC 2 cut(s) 71, 202
Hpy188I TCNGA 3 cut(s) 49, 70, 201
Hpy188III TCNNGA 2 cut(s) 19, 86
HpyAV CCTTC 2 cut(s) 217, 249
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 128, 305, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 2 cut(s) 200, 229
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 2 cut(s) 163, 301
Ksp22I TGATCA 1 cut(s) 15
Kzo9I GATC 3 cut(s) 15, 156, 188
LpnPI CCDG 5 cut(s) 82, 169, 219, 267, 300
Lsp1109I GCAGC 2 cut(s) 295, 317
MaeI CTAG 2 cut(s) 86, 349
MaeII ACGT 1 cut(s) 107
MalI GATC 3 cut(s) 17, 158, 190
MboI GATC 3 cut(s) 15, 156, 188
MboII GAAGA 1 cut(s) 315
MhlI GDGCHC 3 cut(s) 36, 263, 318
MluCI AATT 2 cut(s) 139, 195
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 2 cut(s) 238, 283
MspA1I CMGCKG 2 cut(s) 233, 308
MwoI GCNNNNNNNGC 1 cut(s) 239
NcoI CCATGG 1 cut(s) 297
NdeII GATC 3 cut(s) 15, 156, 188
NlaIII CATG 2 cut(s) 163, 301
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 307, 310
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 284
PstI CTGCAG 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 102
PvuII CAGCTG 2 cut(s) 233, 308
RsaI GTAC 3 cut(s) 106, 238, 273
RsaNI GTAC 3 cut(s) 105, 237, 272
SatI GCNGC 2 cut(s) 306, 309
Sau3AI GATC 3 cut(s) 15, 156, 188
Sau96I GGNCC 1 cut(s) 284
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 3 cut(s) 36, 263, 318
SetI ASST 6 cut(s) 85, 101, 110, 235, 271, 310
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 284
Sse9I AATT 2 cut(s) 139, 195
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 86, 349
StyI CCWWGG 1 cut(s) 297
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 30, 340
TasI AATT 2 cut(s) 139, 195
TfiI GAWTC 1 cut(s) 71
TseI GCWGC 2 cut(s) 305, 308
TspGWI ACGGA 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 85
XspI CTAG 2 cut(s) 86, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.