Rh4AG439200

recombinational repair

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003214
Physical Location & Seq
Reverse (-)
73080843 .. 73088419
7577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG439200.1

Sequence Viewer

Length: 3078 bp
ATGTTTGGTGATGTGGATCACCTTCATGATTTGTTTCAGTCCACTTGGAGATGCTGCTCTTTCTTACGTGGATGGATTGGCAGTTTAATATCGAAGCATTGCACAGATGTGACTGGCTTACAATCAAGAAACTATCTTTCTAAACTGGTTAAAGAAAGGGAGTATCAACTTTCAACCTTCATGTCTCAAACGGCGTATATAGATCTTAGTTCATCTGACAGTGATTTAGAAGAGATAGAGCCTGTTGGTAGAAGAACTCTTCCACCTTCGTTTTCTGCATCTGCTTCTGGTTCAAATTCAAGGAGTAAAGACTATGCTGACAAGTCTAGAAAGGTGCCTTCTCCTGGAAGAGCACATGCTTCTAATGGAATATCTCCTAATTATAATCACCACAGACAAGTGTTAGATAAGTTTCATCCCAGTTCAAGTGGTGACATAAGAGCGTCAAATCGACAGGTTGCCCGAGCAGATAGTTCTACGTATTTCTCTCAAAATGGAAATGCCCTAAAGAGGACCCTTCCATTATCTATGCAGGCTCTAAACCCTGCAGTAGATAACAGGGCCCACAATCAGTTCCGTGATATCACCAACAAGGGTTTTATGAGAGACCATTCAATCAGGGGGAATGATGAACATATGTATGATAGAATGCCTCCATTTGTAAAGTCATCGTCTAACTCCCAATTTCCTAGTTCAAGTGAGCCTCAATACCTTCCGGGAATAGGTGAAGAAAGGGTTGCTGACAGTGACGAGAGGCTGATATATCAAGCGGCACTAGAGGAACTTAATCAACCAAAACTTGAAGCTACTTTACCTGATGGTCTTTTGTCGGTCTCTCTTCTACGACATCAGAAAATTGCTTTGGCATGGATGCTTCAGAAGGAAACCAGAAGCTTGCATTGTCTAGGTGGAATCTTAGCTGATGATCAGGGCCTTGGTAAGACAATCTCAATGATTGCACTTATACAAATGCAGAGGTCTTTGCAATCGAAGTCAAAACCTGAACACTTGGACAATAAAACTGAAGCTTTGAATTTGGATGATGATGAGGACCATGGTGGTTGCGATTTGGATAAAGTCAACAACACTGAAGAATCTGATCTTAAATCAACTCCAGAAGCTAGTACCTCTGCACAGCCATTCAAAAAGAAGAGGCCAGCAGCTGGTACATTGGTGGTTTGTCCAGCAAGTGTTCTTCGACAGTGGGCTAGGGAGCTGGATGAGAAGGTTGCAGAGGAAGCAAAATTGTCTGTACTTGTTTATCATGGAGGCAGCAGAACAAGGAATCCCGAAGAACTTGCTGGCTATGATGTGGTTCTCACTACATATGCTATTGTAACTAATGAAGTCCCAAAACAACCTTTAGTTGATGAGGATGAAGGGGATGAAAAAAATGTGGAAAAGTATGGATTATCTTCTGATTTTTCTGTCAACAAGAAGAGGAAAAAGGCTTCTATTGTTAGTAAGAAGGGAAAGAAAGGTAGGAAAGGATTTGACACTTCCCCTTTTGACTGTGGTTCTGGGCCACTTGCAAGGGTCGGTTGGTTTAGGGTGATACTAGATGAAGCGCAAACCATTAAGAATCACAGAACTCAAGTGGCTAGGGCCTGCTGTAGCCTTCGAGCCAAAAGAAGATGGTGTCTATCTGGTACACCAATACAAAATGCAATTGATGATTTATACAGTTACTTCAGATTTCTGAAATATGATCCTTATGCTGTGTATAAATCATTTTACACTACCATTAAGGTTCCAATATCCAGAAATTCACTCCAAGGTTACAAGAAGCTCCAAGCTGTTCTGAGAGCTATTATGCTGCGCCGGACAAAAGGAACAATGATTGATGGGCAACCTATAATTAATTTACCACCAAAAACAATTAACCTGAGTAAAGTGGAGTTCTCGTCTGAGGAGAGGGCCTTCTATACCAAATTAGAAGCTGATTCACGCTCTCAATTCAAGGCATATGCTGCTGCTGGCACAGTAAATCAAAACTATGCAAATATTCTTTTGATGCTTTTGCGCCTTCGGCAGGCTTGTGATCACCCTCTACTTGTTAAAGGATATGATACTGACTGCGTTGGGAAAGATTCTGTGGCTATGGCAAGTACACTTTCTAGAGAGATGCTTATCAATCTATTGAATGCCCTGGAAAGTTCCGAGGCCATTTGTCGTGTATGCAATGATGTACTTGAGAACCCTGTTGTTACTATGTGTGGCCATGTTTTCTGCCATCAGTGTGTGTCAGAAAATATGACTGGTGATGACAGTATGTGCCCTGCAATTGAATGCAAAAAACAAGTCGGTCCTGATGTTGTTTTCTCCGAATCCACTCTAATAAGTTGCCTCTCTAAGGATCTTGATGGTGGTTCAACGAATTCTCAGTTGATTGAGAAACCAGTAGTGGTACAGAATGAGTACACTTCATCTAAAGTCAGAGCTGTTATTGAGATAATACAGTCACACTGCAGGTTAAACAGCCCAAATTTGGAGCAATATAATTCTACAGGATGCAATAGAGACTCTTCTTTTGAAAATGAAAACCCATATTCAGACATCAATGTTGTAAAGCGCACAACCGTAGTTTCAAACTCGCCAAATGATGGACCAATTAAAGCAATCATTTTCTCCCAATGGACTAAGATGTTGGATTTAGTTGAGAATGCAATGAACGAGTACTGTATACAATACAGAAGGCTTGATGGTACAATGACTCTGACATCAAGAGACAGGGCTGTCAAAGAATTCAACACTGATCCTGAGGTCACTGTTATGCTTATGTCACTAAAGGCAGGAAACCTTGGTCTAAACATGGTTGCTGCATGTCATGTTATCCTTTTGGATCTTTGGTGGAATCCAACAACTGAGGATCAAGCTGTTGATAGGGCACATAGAATTGGACAAACCCGGCCTGTTACTGTAACTCGACTTACTATTAAGGATACAGTAGAGGACAGGATATTAGCTCTACAGGATGAGAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGACAATAGTGGGGGCTCTGCAGCTCGTCTGACAGTTGAGGATCTCAGATACCTATTTATGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000278 GO:0000724 GO:0000725 GO:0000785 GO:0000790 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006302 GO:0006304 GO:0006305 GO:0006306 GO:0006310 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007154 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009292 GO:0009294 GO:0009605 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0009991 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0019787 GO:0022402 GO:0030162 GO:0031047 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031668 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032269 GO:0032392 GO:0032434 GO:0032435 GO:0032446 GO:0032508 GO:0033260 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042176 GO:0042177 GO:0042262 GO:0042623 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0044764 GO:0044786 GO:0045003 GO:0045005 GO:0045861 GO:0046483 GO:0046872 GO:0046914 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070035 GO:0070647 GO:0071103 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0140083 GO:0140096 GO:0140097 GO:1901360 GO:1901564 GO:1901576 GO:1901799 GO:1902298 GO:1902969 GO:1903047 GO:1903050 GO:1903051 GO:1903362 GO:1903363 GO:1990505 GO:2000058 GO:2000059
KEGG Pathways
Metabolic & Signaling
ko04918 map04918
Pfam Domains
Protein Families
Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3

Protein Analysis

1025

Amino Acids

114.47

Weight (kDa)

7.48

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNF2-rel_dom PF00176 283 - 683 1.3e-66 SNF2-related domain
zf-C3HC4_2 PF13923 724 - 760 5.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 724 - 760 8.3e-07 RING-type zinc-finger
zf-C3HC4 PF00097 724 - 760 1.3e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 724 - 760 4.5e-06 zinc finger of C3HC4-type, RING
Helicase_C PF00271 872 - 967 1.5e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
AasI GACNNNNNNGTC 1 cut(s) 2735
Acc36I ACCTGC 1 cut(s) 2460
AccB1I GGYRCC 1 cut(s) 334
AccB7I CCANNNNNTGG 2 cut(s) 1163, 2603
AccI GTMKAC 1 cut(s) 2683
AciI CCGC 1 cut(s) 770
AclWI GGATC 7 cut(s) 24, 1703, 2364, 2750, 2850, 2877, 3060
AcoI YGGCCR 1 cut(s) 2218
AcsI RAATTY 6 cut(s) 295, 1033, 1765, 2377, 2485, 2744
AcuI CTGAAG 4 cut(s) 860, 1044, 1110, 1675
AfiI CCNNNNNNNGG 9 cut(s) 344, 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
AjnI CCWGG 2 cut(s) 343, 2148
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
AleI CACNNNNGTG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 1270, 1302
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
AlwI GGATC 7 cut(s) 24, 1703, 2364, 2750, 2850, 2877, 3060
AlwNI CAGNNNCTG 1 cut(s) 1163
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 9 cut(s) 561, 931, 1154, 1523, 1605, 1917, 2163, 2218, 2909
ApaI GGGCCC 1 cut(s) 565
ApeKI GCWGC 8 cut(s) 54, 1160, 1272, 1816, 1970, 1973, 2819, 3032
ApoI RAATTY 6 cut(s) 295, 1033, 1765, 2377, 2485, 2744
ArsI GACNNNNNNTTYG 4 cut(s) 2286, 2318, 2513, 2545
AseI ATTAAT 1 cut(s) 1860
AspLEI GCGC 4 cut(s) 1570, 1821, 2025, 2574
AsuC2I CCSGG 2 cut(s) 717, 2908
AvaI CYCGRG 1 cut(s) 462
AvaII GGWCC 4 cut(s) 513, 1051, 2306, 2606
AxyI CCTNAGG 1 cut(s) 2760
BaeGI GKGCMC 3 cut(s) 565, 2279, 2890
BaeI ACNNNNGTAYC 2 cut(s) 1158, 1191
BalI TGGCCA 1 cut(s) 2220
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 2 cut(s) 565, 3029
BarI GAAGNNNNNNTAC 2 cut(s) 795, 827
BbsI GAAGAC 1 cut(s) 3018
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
BccI CCATC 8 cut(s) 66, 812, 1629, 1838, 2241, 2357, 2597, 2696
BceAI ACGGC 1 cut(s) 207
BcgI CGANNNNNNTGC 2 cut(s) 1280, 1314
BciT130I CCWGG 2 cut(s) 345, 2150
BciVI GTATCC 1 cut(s) 2935
BclI TGATCA 2 cut(s) 925, 2041
BcnI CCSGG 2 cut(s) 717, 2908
BcoDI GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
BfmI CTRYAG 6 cut(s) 546, 1612, 2467, 2505, 2969, 3030
BfuAI ACCTGC 1 cut(s) 2460
BfuI GTATCC 1 cut(s) 2935
BglII AGATCT 1 cut(s) 202
BisI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
BlsI GCNGC 9 cut(s) 56, 772, 1162, 1274, 1818, 1972, 1975, 2821, 3034
BmcAI AGTACT 1 cut(s) 2678
Bme1390I CCNGG 4 cut(s) 345, 717, 2150, 2908
Bme18I GGWCC 4 cut(s) 513, 1051, 2306, 2606
BmeT110I CYCGRG 1 cut(s) 462
BmiI GGNNCC 4 cut(s) 336, 515, 563, 1752
BmrFI CCNGG 4 cut(s) 345, 717, 2150, 2908
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 7 cut(s) 41, 287, 861, 2004, 2115, 2501, 3005
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 3018
BpmI CTGGAG 1 cut(s) 1098
BpuEI CTTGAG 2 cut(s) 1578, 2213
BpuMI CCSGG 2 cut(s) 717, 2908
BsaAI YACGTR 2 cut(s) 68, 480
BsaBI GATNNNNATC 2 cut(s) 15, 2129
BsaI GGTCTC 2 cut(s) 600, 838
BsaJI CCNNGG 6 cut(s) 934, 1054, 1774, 2148, 2160, 2800
BsaXI ACNNNNNCTCC 2 cut(s) 1889, 1919
Bsc4I CCNNNNNNNGG 9 cut(s) 344, 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
Bse1I ACTGG 5 cut(s) 118, 150, 420, 2263, 2399
Bse21I CCTNAGG 1 cut(s) 2760
Bse3DI GCAATG 3 cut(s) 97, 2188, 2673
Bse8I GATNNNNATC 2 cut(s) 15, 2129
BseBI CCWGG 2 cut(s) 345, 2150
BseDI CCNNGG 6 cut(s) 934, 1054, 1774, 2148, 2160, 2800
BseGI GGATG 9 cut(s) 77, 415, 876, 1045, 1225, 1381, 1390, 2516, 2980
BseJI GATNNNNATC 2 cut(s) 15, 2129
BseLI CCNNNNNNNGG 9 cut(s) 344, 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
BseMI GCAATG 3 cut(s) 97, 2188, 2673
BseMII CTCAG 7 cut(s) 1793, 1877, 1899, 2396, 2751, 2856, 3070
BseNI ACTGG 5 cut(s) 118, 150, 420, 2263, 2399
BseRI GAGGAG 1 cut(s) 1925
BseSI GKGCMC 3 cut(s) 565, 2279, 2890
BseXI GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
BsgI GTGCAG 1 cut(s) 1116
BshFI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
BshNI GGYRCC 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 3 cut(s) 716, 1822, 2908
BslFI GGGAC 1 cut(s) 1334
BslI CCNNNNNNNGG 9 cut(s) 344, 510, 722, 1163, 2032, 2353, 2488, 2603, 3070
BsmAI GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
BsmFI GGGAC 1 cut(s) 1334
BsmI GAATGC 4 cut(s) 654, 2149, 2294, 2668
BsnI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
Bso31I GGTCTC 2 cut(s) 600, 838
BsoBI CYCGRG 1 cut(s) 462
Bsp120I GGGCCC 1 cut(s) 561
Bsp1286I GDGCHC 5 cut(s) 355, 565, 2279, 2890, 3029
Bsp19I CCATGG 1 cut(s) 1054
BspACI CCGC 1 cut(s) 770
BspANI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
BspCNI CTCAG 7 cut(s) 1794, 1878, 1900, 2395, 2752, 2857, 3069
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 4 cut(s) 336, 515, 563, 1752
BspMAI CTGCAG 3 cut(s) 550, 2471, 3034
BspMI ACCTGC 1 cut(s) 2460
BspPI GGATC 7 cut(s) 24, 1703, 2364, 2750, 2850, 2877, 3060
BspQI GCTCTTC 1 cut(s) 343
BspT107I GGYRCC 1 cut(s) 334
BspTNI GGTCTC 2 cut(s) 600, 838
BsrDI GCAATG 3 cut(s) 97, 2188, 2673
BsrI ACTGG 5 cut(s) 118, 150, 420, 2263, 2399
BssECI CCNNGG 6 cut(s) 934, 1054, 1774, 2148, 2160, 2800
BssNAI GTATAC 1 cut(s) 2684
BssT1I CCWWGG 4 cut(s) 934, 1054, 1774, 2800
Bst1107I GTATAC 1 cut(s) 2684
Bst2UI CCWGG 2 cut(s) 345, 2150
Bst6I CTCTTC 8 cut(s) 225, 264, 343, 843, 1145, 1433, 2530, 2975
BstAPI GCANNNNNTGC 1 cut(s) 1970
BstBAI YACGTR 2 cut(s) 68, 480
BstC8I GCNNGC 7 cut(s) 534, 896, 1158, 1303, 1609, 1978, 2034
BstDSI CCRYGG 1 cut(s) 1054
BstENI CCTNNNNNAGG 2 cut(s) 2030, 2351
BstF5I GGATG 9 cut(s) 77, 415, 876, 1045, 1225, 1381, 1390, 2516, 2980
BstHHI GCGC 4 cut(s) 1570, 1821, 2025, 2574
BstMAI GTCTC 5 cut(s) 189, 600, 838, 2514, 2721
BstMWI GCNNNNNNNGC 3 cut(s) 1238, 1970, 2029
BstNI CCWGG 2 cut(s) 345, 2150
BstNSI RCATGY 2 cut(s) 359, 2826
BstSCI CCNGG 4 cut(s) 343, 715, 2148, 2906
BstSFI CTRYAG 6 cut(s) 546, 1612, 2467, 2505, 2969, 3030
BstSLI GKGCMC 3 cut(s) 565, 2279, 2890
BstSNI TACGTA 1 cut(s) 480
BstV1I GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
BstV2I GAAGAC 1 cut(s) 3018
BstX2I RGATCY 4 cut(s) 202, 2356, 2842, 3052
BstYI RGATCY 4 cut(s) 202, 2356, 2842, 3052
BstZ17I GTATAC 1 cut(s) 2684
Bsu36I CCTNAGG 1 cut(s) 2760
BsuI GTATCC 1 cut(s) 2935
BsuRI GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
BtgI CCRYGG 1 cut(s) 1054
BtsCI GGATG 9 cut(s) 77, 415, 876, 1045, 1225, 1381, 1390, 2516, 2980
BtsI GCAGTG 1 cut(s) 2464
BtsIMutI CAGTG 8 cut(s) 226, 751, 1086, 1208, 2243, 2464, 2751, 2766
BveI ACCTGC 1 cut(s) 2460
Cac8I GCNNGC 7 cut(s) 534, 896, 1158, 1303, 1609, 1978, 2034
CaiI CAGNNNCTG 1 cut(s) 1163
CciI TCATGA 1 cut(s) 25
CfoI GCGC 4 cut(s) 1570, 1821, 2025, 2574
CseI GACGC 1 cut(s) 432
DrdI GACNNNNNNGTC 1 cut(s) 2735
DseDI GACNNNNNNGTC 1 cut(s) 2735
EaeI YGGCCR 1 cut(s) 2218
Eam1104I CTCTTC 8 cut(s) 225, 264, 343, 843, 1145, 1433, 2530, 2975
EarI CTCTTC 8 cut(s) 225, 264, 343, 843, 1145, 1433, 2530, 2975
Eco105I TACGTA 1 cut(s) 480
Eco130I CCWWGG 4 cut(s) 934, 1054, 1774, 2800
Eco24I GRGCYC 2 cut(s) 565, 3029
Eco31I GGTCTC 2 cut(s) 600, 838
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 4 cut(s) 513, 1051, 2306, 2606
Eco57I CTGAAG 4 cut(s) 860, 1044, 1110, 1675
Eco81I CCTNAGG 1 cut(s) 2760
Eco88I CYCGRG 1 cut(s) 462
EcoNI CCTNNNNNAGG 2 cut(s) 2030, 2351
EcoO109I RGGNCCY 5 cut(s) 513, 561, 931, 1605, 1917
EcoRI GAATTC 2 cut(s) 2377, 2744
EcoRII CCWGG 2 cut(s) 343, 2148
EcoRV GATATC 1 cut(s) 583
EcoT14I CCWWGG 4 cut(s) 934, 1054, 1774, 2800
EcoT38I GRGCYC 2 cut(s) 565, 3029
ErhI CCWWGG 4 cut(s) 934, 1054, 1774, 2800
FaqI GGGAC 1 cut(s) 1334
FauNDI CATATG 3 cut(s) 636, 1327, 1966
FbaI TGATCA 2 cut(s) 925, 2041
FblI GTMKAC 1 cut(s) 2683
Fnu4HI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
FokI GGATG 9 cut(s) 84, 402, 883, 1052, 1232, 1388, 1397, 2523, 2987
FriOI GRGCYC 2 cut(s) 565, 3029
Fsp4HI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
GlaI GCGC 4 cut(s) 1569, 1820, 2024, 2573
GluI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
GsuI CTGGAG 1 cut(s) 1098
HaeIII GGCC 9 cut(s) 563, 933, 1156, 1525, 1607, 1919, 2165, 2220, 2911
HapII CCGG 3 cut(s) 716, 1822, 2908
HgaI GACGC 1 cut(s) 432
HhaI GCGC 4 cut(s) 1570, 1821, 2025, 2574
Hin6I GCGC 4 cut(s) 1568, 1819, 2023, 2572
HinP1I GCGC 4 cut(s) 1568, 1819, 2023, 2572
HincII GTYRAC 2 cut(s) 1081, 1432
HindII GTYRAC 2 cut(s) 1081, 1432
HindIII AAGCTT 2 cut(s) 892, 1026
HpaII CCGG 3 cut(s) 716, 1822, 2908
Hpy166II GTNNAC 7 cut(s) 42, 1081, 1432, 1652, 2111, 2421, 2684
Hpy8I GTNNAC 7 cut(s) 42, 1081, 1432, 1652, 2111, 2421, 2684
HpyCH4IV ACGT 2 cut(s) 67, 479
HpyF10VI GCNNNNNNNGC 3 cut(s) 1238, 1970, 2029
HpySE526I ACGT 2 cut(s) 67, 479
HspAI GCGC 4 cut(s) 1568, 1819, 2023, 2572
Ksp22I TGATCA 2 cut(s) 925, 2041
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 3 cut(s) 1213, 1794, 2491
Lsp1109I GCAGC 8 cut(s) 41, 1172, 1284, 1803, 1957, 1960, 2806, 3044
LweI GCATC 7 cut(s) 41, 287, 861, 2004, 2115, 2501, 3005
MaeII ACGT 2 cut(s) 67, 479
MfeI CAATTG 2 cut(s) 1668, 2283
MflI RGATCY 4 cut(s) 202, 2356, 2842, 3052
MhlI GDGCHC 5 cut(s) 355, 565, 2279, 2890, 3029
MlsI TGGCCA 1 cut(s) 2220
MluNI TGGCCA 1 cut(s) 2220
MlyI GAGTC 2 cut(s) 2516, 2707
MmeI TCCRAC 2 cut(s) 2628, 2882
Mox20I TGGCCA 1 cut(s) 2220
MscI TGGCCA 1 cut(s) 2220
MslI CAYNNNNRTG 5 cut(s) 24, 107, 639, 2238, 2771
Msp20I TGGCCA 1 cut(s) 2220
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 3 cut(s) 716, 1822, 2908
MspR9I CCNGG 4 cut(s) 345, 717, 2150, 2908
MunI CAATTG 2 cut(s) 1668, 2283
Mva1269I GAATGC 4 cut(s) 654, 2149, 2294, 2668
MvaI CCWGG 2 cut(s) 345, 2150
MwoI GCNNNNNNNGC 3 cut(s) 1238, 1970, 2029
NciI CCSGG 2 cut(s) 717, 2908
NcoI CCATGG 1 cut(s) 1054
NdeI CATATG 3 cut(s) 636, 1327, 1966
NlaIV GGNNCC 4 cut(s) 336, 515, 563, 1752
NmuCI GTSAC 6 cut(s) 109, 431, 746, 2460, 2764, 2781
NspI RCATGY 2 cut(s) 359, 2826
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 343
PctI GAATGC 4 cut(s) 654, 2149, 2294, 2668
PfeI GAWTC 8 cut(s) 912, 1094, 1285, 1582, 1943, 2090, 2327, 2854
PflMI CCANNNNNTGG 2 cut(s) 1163, 2603
PfoI TCCNGGA 2 cut(s) 343, 715
PkrI GCNGC 9 cut(s) 56, 772, 1162, 1274, 1818, 1972, 1975, 2821, 3034
PleI GAGTC 2 cut(s) 2516, 2707
PpsI GAGTC 2 cut(s) 2516, 2707
Ppu21I YACGTR 2 cut(s) 68, 480
PpuMI RGGWCCY 1 cut(s) 513
PshBI ATTAAT 1 cut(s) 1860
PsiI TTATAA 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 513
Psp6I CCWGG 2 cut(s) 343, 2148
PspGI CCWGG 2 cut(s) 343, 2148
PspN4I GGNNCC 4 cut(s) 336, 515, 563, 1752
PspOMI GGGCCC 1 cut(s) 561
PspPPI RGGWCCY 1 cut(s) 513
PstI CTGCAG 3 cut(s) 550, 2471, 3034
PstNI CAGNNNCTG 1 cut(s) 1163
PsuI RGATCY 4 cut(s) 202, 2356, 2842, 3052
PvuII CAGCTG 1 cut(s) 1163
RseI CAYNNNNRTG 5 cut(s) 24, 107, 639, 2238, 2771
SapI GCTCTTC 1 cut(s) 343
SatI GCNGC 9 cut(s) 55, 771, 1161, 1273, 1817, 1971, 1974, 2820, 3033
ScaI AGTACT 1 cut(s) 2678
SchI GAGTC 2 cut(s) 2516, 2707
ScrFI CCNGG 4 cut(s) 345, 717, 2150, 2908
SduI GDGCHC 5 cut(s) 355, 565, 2279, 2890, 3029
SfaNI GCATC 7 cut(s) 41, 287, 861, 2004, 2115, 2501, 3005
SfcI CTRYAG 6 cut(s) 546, 1612, 2467, 2505, 2969, 3030
SinI GGWCC 4 cut(s) 513, 1051, 2306, 2606
SmiMI CAYNNNNRTG 5 cut(s) 24, 107, 639, 2238, 2771
SmlI CTYRAG 2 cut(s) 1593, 2192
SmoI CTYRAG 2 cut(s) 1593, 2192
SnaBI TACGTA 1 cut(s) 480
SsiI CCGC 1 cut(s) 770
SspI AATATT 1 cut(s) 2005
StyD4I CCNGG 4 cut(s) 343, 715, 2148, 2906
StyI CCWWGG 4 cut(s) 934, 1054, 1774, 2800
TaiI ACGT 2 cut(s) 70, 482
TaqI TCGA 6 cut(s) 92, 451, 989, 1198, 1621, 2926
TaqII GACCGA 2 cut(s) 820, 2294
TatI WGTACW 5 cut(s) 1252, 2108, 2188, 2418, 2676
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 8 cut(s) 912, 1094, 1285, 1582, 1943, 2090, 2327, 2854
TscAI CASTG 8 cut(s) 226, 751, 1093, 1208, 2243, 2471, 2758, 2773
TseFI GTSAC 6 cut(s) 109, 431, 746, 2460, 2764, 2781
TseI GCWGC 8 cut(s) 54, 1160, 1272, 1816, 1970, 1973, 2819, 3032
Tsp45I GTSAC 6 cut(s) 109, 431, 746, 2460, 2764, 2781
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 8 cut(s) 226, 751, 1093, 1208, 2243, 2471, 2758, 2773
Van91I CCANNNNNTGG 2 cut(s) 1163, 2603
VpaK11BI GGWCC 4 cut(s) 513, 1051, 2306, 2606
VspI ATTAAT 1 cut(s) 1860
XagI CCTNNNNNAGG 2 cut(s) 2030, 2351
XapI RAATTY 6 cut(s) 295, 1033, 1765, 2377, 2485, 2744
XbaI TCTAGA 2 cut(s) 326, 2117
XceI RCATGY 2 cut(s) 359, 2826
XmiI GTMKAC 1 cut(s) 2683
ZrmI AGTACT 1 cut(s) 2678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.