Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005032

Physical Location & Seq

Genomic Coordinates Forward (+)

34483319 .. 34484206

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G384400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAATCATGCACAGGGAATCCAAGCTCTCCAAATGGTTCTCTAATAGCAAGAATTTCAAACTAACCCTCCCTTTCCTTCGTTCAAAACCCAGAAGCCAGAGCCCCTGTCCTACTCAAAATCAAAACAGTAGCATCGCAAAAGATGACGAGCTTGCAAAGGTTTTTGATCATTTTGACACCAACAGAGACGGAAAGATCTCGTGTGACGAACTTCAGGCTTACTTCATGTCGATAGGGGAATCCATGTCCAATGCAGAGGCTCAGAGTGTGATCAACGAATTTGATAACGATGGTGACAACTTATTGGAGTTTGAAGACTTTGTGAAATTGATGGGGAGGGAGGGTGATGCCGACGATGATGATCTTAAAGGGGCTTTTGAGATGTTTGAAGTTGATAAAGGTTGTGGCTGCATAACACCAAAAGGGTTGCAGAATATGTTCAATCGACTAGGTGAAGCCAGATCCTATGATGAGTGTGTGTCCATGATTGGAGTCTTTGATCTTGACGGAAATGGAGTCCTTGATTTTAATGAATTTCTCAAGATGATGATTTCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_7 EF-hand_8

Protein Analysis

188

Amino Acids

21.17

Weight (kDa)

4.55

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50770
fragaria_vesca	FvH4_1g14170 FvH4_1g14170 FvH4_2g40400
malus_domestica	MD08G1037100.v1.1 MD15G1270300.v1.1
prunus_persica	Prupe.1G384400_v2.0.a1 Prupe.7G147800_v2.0.a1
pyrus_communis	pycom08g02950 pycom15g23450
rosa_chinensis	RchiOBHm_Chr2g0102831 RchiOBHm_Chr6g0300351
rosa_laevigata	RLG00000011345 RLG00000017182
rosa_multiflora	Rmu_sc0001670.1_g000020 Rmu_sc0006537.1_g000014
rosa_roxburghii	Rroxscaffold_2G00140280 Rroxscaffold_7G00167870
rosa_rugosa	Rorug02G0109900 Rorug06G0295200
rosa_samantha	Rh2AG158400 Rh2BG164800 Rh2CG164500 Rh2DG163600 Rh6AG408000 Rh6BG415300 Rh6CG422700 Rh6DG408300
rosa_wichuraiana	Rw2G012320 Rw6G035680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	459
AcsI	RAATTY	3 cut(s)	55, 281, 536
AcuI	CTGAAG	1 cut(s)	200
AgsI	TTSAA	6 cut(s)	61, 87, 317, 392, 445, 558
AluBI	AGCT	2 cut(s)	28, 154
AluI	AGCT	2 cut(s)	28, 154
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	411
ApoI	RAATTY	3 cut(s)	55, 281, 536
Asp700I	GAANNNNTTC	1 cut(s)	440
AsuHPI	GGTGA	3 cut(s)	308, 359, 467
BanII	GRGCYC	1 cut(s)	107
BauI	CACGAG	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	2 cut(s)	287, 328
BclI	TGATCA	2 cut(s)	169, 273
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	452
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
BmsI	GCATC	2 cut(s)	144, 340
BpiI	GAAGAC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	527
BsaBI	GATNNNNATC	1 cut(s)	363
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 331, 361
Bse8I	GATNNNNATC	1 cut(s)	363
BseJI	GATNNNNATC	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	183
BsmBI	CGTCTC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
BspCNI	CTCAG	1 cut(s)	277
BspPI	GGATC	1 cut(s)	459
BssMI	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
BssSI	CACGAG	1 cut(s)	202
Bst2BI	CACGAG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	264
BstKTI	GATC	6 cut(s)	172, 201, 276, 367, 467, 505
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
BstV1I	GCAGC	1 cut(s)	398
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	2 cut(s)	198, 464
BstYI	RGATCY	2 cut(s)	198, 464
BtgZI	GCGATG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	156
CviAII	CATG	4 cut(s)	10, 229, 247, 487
CviJI	RGCY	9 cut(s)	28, 99, 105, 154, 221, 263, 377, 411, 461
CviKI_1	RGCY	9 cut(s)	28, 99, 105, 154, 221, 263, 377, 411, 461
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	6 cut(s)	171, 200, 275, 366, 466, 504
DpnII	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
Eco24I	GRGCYC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	4 cut(s)	13, 232, 250, 490
FaiI	YATR	7 cut(s)	11, 230, 248, 416, 440, 471, 488
FatI	CATG	4 cut(s)	9, 228, 246, 486
FbaI	TGATCA	2 cut(s)	169, 273
Fnu4HI	GCNGC	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	412
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	1 cut(s)	412
Hin1II	CATG	4 cut(s)	13, 232, 250, 490
HinfI	GANTC	4 cut(s)	20, 242, 495, 519
HphI	GGTGA	3 cut(s)	308, 359, 467
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	2 cut(s)	506, 544
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	5 cut(s)	13, 158, 257, 414, 433
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	13, 232, 250, 490
Ksp22I	TGATCA	2 cut(s)	169, 273
Kzo9I	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
LpnPI	CCDG	5 cut(s)	106, 113, 121, 203, 475
Lsp1109I	GCAGC	1 cut(s)	398
LweI	GCATC	2 cut(s)	144, 340
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	206, 296
MalI	GATC	6 cut(s)	171, 200, 275, 366, 466, 504
MboI	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	2 cut(s)	198, 464
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	4 cut(s)	55, 281, 329, 536
MlyI	GAGTC	2 cut(s)	504, 528
MnlI	CCTC	4 cut(s)	80, 253, 333, 337
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	3 cut(s)	369, 531, 562
NdeII	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
NlaIII	CATG	4 cut(s)	13, 232, 250, 490
NmuCI	GTSAC	2 cut(s)	206, 296
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	20, 242
PkrI	GCNGC	1 cut(s)	413
PleI	GAGTC	2 cut(s)	503, 527
PpsI	GAGTC	2 cut(s)	503, 527
PsuI	RGATCY	2 cut(s)	198, 464
SaqAI	TTAA	3 cut(s)	369, 531, 562
SatI	GCNGC	1 cut(s)	412
Sau3AI	GATC	6 cut(s)	169, 198, 273, 364, 464, 502
SchI	GAGTC	2 cut(s)	504, 528
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	5 cut(s)	30, 156, 165, 406, 457
SfaNI	GCATC	2 cut(s)	144, 340
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	4 cut(s)	55, 281, 329, 536
SspMI	CTAG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	233, 448
TasI	AATT	4 cut(s)	55, 281, 329, 536
TfiI	GAWTC	2 cut(s)	20, 242
Tru1I	TTAA	3 cut(s)	369, 531, 562
Tru9I	TTAA	3 cut(s)	369, 531, 562
TseFI	GTSAC	2 cut(s)	206, 296
TseI	GCWGC	1 cut(s)	411
Tsp45I	GTSAC	2 cut(s)	206, 296
TspDTI	ATGAA	3 cut(s)	17, 217, 549
TspGWI	ACGGA	2 cut(s)	207, 525
XapI	RAATTY	3 cut(s)	55, 281, 536
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.