Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006537.1

Orthogroup ID

OG0005032

Physical Location & Seq

Genomic Coordinates Reverse (-)

54836 .. 55544

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006537.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atggcagcaatagccaatgatattcagagaaactccaaatcttccaaatggtttgctagcaagagtctcaagctcagcttccctcgtcgccgatcaccgtcgaagtccacctcatcgccttcaacctctcccacctcccctttctctccgttaactaccgctaccactccaagacataccaacagggaagatgagttcagagaagtatttcgctatttcgacggagatggagatggaaaaatttcggccacggagctgagagcttattttgggtccacaggggagtacatgtcgtatgaagaggccgagactgtgatcaaggagctcgattccgacggggacagtctgttaaactttgaggattttcttcagctgatgaagaaggaaggcggcgaagacgaggatctgaagagggctttcgagatgtttgaactggagaaagggttcataaccccaagaagcttgcagaggatgttgcacagactcggagacaccaagtcttatgatgagtgtgcgactatgatccaagtttatgatactgatgggaatggggtgcttgattttaacgagtttcatcgaatgatggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_8

Protein Analysis

196

Amino Acids

22.34

Weight (kDa)

5.03

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50770
fragaria_vesca	FvH4_1g14170 FvH4_1g14170 FvH4_2g40400
malus_domestica	MD08G1037100.v1.1 MD15G1270300.v1.1
prunus_persica	Prupe.1G384400_v2.0.a1 Prupe.7G147800_v2.0.a1
pyrus_communis	pycom08g02950 pycom15g23450
rosa_chinensis	RchiOBHm_Chr2g0102831 RchiOBHm_Chr6g0300351
rosa_laevigata	RLG00000011345 RLG00000017182
rosa_multiflora	Rmu_sc0001670.1_g000020 Rmu_sc0006537.1_g000014
rosa_roxburghii	Rroxscaffold_2G00140280 Rroxscaffold_7G00167870
rosa_rugosa	Rorug02G0109900 Rorug06G0295200
rosa_samantha	Rh2AG158400 Rh2BG164800 Rh2CG164500 Rh2DG163600 Rh6AG408000 Rh6BG415300 Rh6CG422700 Rh6DG408300
rosa_wichuraiana	Rw2G012320 Rw6G035680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	159, 390
AclWI	GGATC	2 cut(s)	411, 517
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	2 cut(s)	353, 428
AfaI	GTAC	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	123, 431
AhdI	GACNNNNNGTC	1 cut(s)	496
AloI	GAACNNNNNNTCC	4 cut(s)	179, 211, 428, 460
AluBI	AGCT	7 cut(s)	73, 78, 256, 263, 325, 373, 462
AluI	AGCT	7 cut(s)	73, 78, 256, 263, 325, 373, 462
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	3 cut(s)	71, 302, 483
AlwI	GGATC	2 cut(s)	411, 517
AoxI	GGCC	2 cut(s)	246, 303
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	240
Asp700I	GAANNNNTTC	3 cut(s)	207, 241, 443
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	87
AsuNHI	GCTAGC	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	221, 227, 536, 577
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	3 cut(s)	71, 302, 483
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	6, 391
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	2 cut(s)	7, 392
Bme18I	GGWCC	1 cut(s)	273
BmeRI	GACNNNNNGTC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	274
BmtI	GCTAGC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	455
Bpu1102I	GCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 428, 458
Bse1I	ACTGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	88, 248
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	2 cut(s)	248, 305
BsiHKAI	GWGCWC	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	71, 302, 483
BsmFI	GGGAC	1 cut(s)	353
BsnI	GGCC	2 cut(s)	248, 305
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	92, 315, 403, 522
Bsp1720I	GCTNAGC	1 cut(s)	74
BspACI	CCGC	2 cut(s)	159, 390
BspANI	GGCC	2 cut(s)	248, 305
BspCNI	CTCAG	2 cut(s)	87, 249
BspLI	GGNNCC	1 cut(s)	274
BspOI	GCTAGC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	411, 517
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	4 cut(s)	92, 315, 403, 522
Bst4CI	ACNGT	3 cut(s)	99, 313, 344
Bst6I	CTCTTC	2 cut(s)	294, 404
BstC8I	GCNNGC	2 cut(s)	58, 464
BstDEI	CTNAG	2 cut(s)	74, 257
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	477
BstKTI	GATC	4 cut(s)	95, 318, 406, 525
BstMAI	GTCTC	3 cut(s)	71, 302, 483
BstMBI	GATC	4 cut(s)	92, 315, 403, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	248, 305
BtgI	CCRYGG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	58, 464
Cfr13I	GGNCC	1 cut(s)	273
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	74, 257
DpnI	GATC	4 cut(s)	94, 317, 405, 524
DpnII	GATC	4 cut(s)	92, 315, 403, 522
DriI	GACNNNNNGTC	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	294, 404
Eam1105I	GACNNNNNGTC	1 cut(s)	496
EarI	CTCTTC	2 cut(s)	294, 404
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	353, 428
EcoICRI	GAGCTC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	1 cut(s)	292
FaiI	YATR	7 cut(s)	177, 290, 297, 449, 504, 521, 534
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	6, 391
FokI	GGATG	1 cut(s)	484
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	6, 391
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	2 cut(s)	6, 391
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	248, 305
Hin1II	CATG	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	3 cut(s)	64, 329, 483
HpaI	GTTAAC	1 cut(s)	153
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	3 cut(s)	108, 153, 276
Hpy188I	TCNGA	5 cut(s)	27, 200, 334, 408, 488
Hpy188III	TCNNGA	1 cut(s)	421
Hpy8I	GTNNAC	3 cut(s)	108, 153, 276
Hpy99I	CGWCG	4 cut(s)	90, 103, 224, 338
HpyAV	CCTTC	3 cut(s)	129, 376, 380
HpyCH4III	ACNGT	3 cut(s)	99, 313, 344
HpyCH4V	TGCA	2 cut(s)	466, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	74, 257
Hsp92II	CATG	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	153
Kzo9I	GATC	4 cut(s)	92, 315, 403, 522
LmnI	GCTCC	2 cut(s)	253, 322
LpnPI	CCDG	3 cut(s)	169, 264, 419
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	57
MalI	GATC	4 cut(s)	94, 317, 405, 524
MboI	GATC	4 cut(s)	92, 315, 403, 522
MboII	GAAGA	7 cut(s)	33, 200, 311, 359, 391, 407, 421
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	1 cut(s)	240
MlyI	GAGTC	2 cut(s)	73, 477
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	9 cut(s)	93, 121, 136, 145, 295, 352, 394, 405, 462
MroXI	GAANNNNTTC	3 cut(s)	207, 241, 443
MseI	TTAA	4 cut(s)	152, 350, 564, 589
MspA1I	CMGCKG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	4 cut(s)	92, 315, 403, 522
NheI	GCTAGC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	331
NspI	RCATGY	1 cut(s)	292
PciI	ACATGT	1 cut(s)	288
PdmI	GAANNNNTTC	3 cut(s)	207, 241, 443
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	7, 392
PleI	GAGTC	2 cut(s)	72, 477
PpsI	GAGTC	2 cut(s)	72, 477
PscI	ACATGT	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	4 cut(s)	152, 350, 564, 589
SatI	GCNGC	2 cut(s)	6, 391
Sau3AI	GATC	4 cut(s)	92, 315, 403, 522
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	73, 477
SduI	GDGCHC	1 cut(s)	327
SinI	GGWCC	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	2 cut(s)	159, 390
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	99, 313, 344
TaqI	TCGA	5 cut(s)	101, 219, 327, 420, 577
TasI	AATT	1 cut(s)	240
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	4 cut(s)	152, 350, 564, 589
Tru9I	TTAA	4 cut(s)	152, 350, 564, 589
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	312, 392, 436, 563
TspGWI	ACGGA	3 cut(s)	138, 237, 266
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	240
XceI	RCATGY	1 cut(s)	292
XmnI	GAANNNNTTC	3 cut(s)	207, 241, 443
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.