Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005032

Physical Location & Seq

Genomic Coordinates Reverse (-)

61229228 .. 61229943

Gene Structure 716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGATCAAGGAAAATGGCTCAAAGCCCTACAAATGGTTTTTCACTGCTAAGAGTATGTTTAAGCTAAACCTCTCTTTCCTTGGTTCAAAACCCAAAAGCCATAGCCCCCCTTTATCTTCATCTCTTCCTACTCAAAGTTACAACTTTGTCTCAAGAAATGAGGAGCTTGCAAAAGTTTTTGGTCATTTTGACACCAACAAAGACGGTAAGATCTCAGGCGACGAACTTCAAGCTTACTTCATGTCAATTGGGGAACCCATGTCCACTCATGAGGCTCGAAGTGTGATAAAAGAATTGGACAATGATGGTGATAACTTGTTGGAGTTTGATGACTTCGTCAAATTGATGAGGCGAGAGGATATTGATAACAATGAAAATGACGATCTAAAGAACGCTTTTGAGATGTTTGAAGTTGATAAAGGTTGCGGATGCATAACACCAAAAGGATTGCAAAACATGTTCAATCGACTAGGAGATGCCAAATCCTATGATGAGTGTGTATCCATGGTCGGTGTCTTTGATCTTGACGGAAATGGAATGGAGTCCTCGATTTCAATGAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_7 EF-hand_8

Protein Analysis

189

Amino Acids

21.35

Weight (kDa)

4.86

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	55 - 118	4.3e-15	EF-hand domain pair
EF-hand_6	PF13405	56 - 85	1e-06	EF-hand domain
EF-hand_1	PF00036	56 - 83	1.9e-06	EF hand domain
EF-hand_5	PF13202	58 - 82	4.3e-06	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50770
fragaria_vesca	FvH4_1g14170 FvH4_1g14170 FvH4_2g40400
malus_domestica	MD08G1037100.v1.1 MD15G1270300.v1.1
prunus_persica	Prupe.1G384400_v2.0.a1 Prupe.7G147800_v2.0.a1
pyrus_communis	pycom08g02950 pycom15g23450
rosa_chinensis	RchiOBHm_Chr2g0102831 RchiOBHm_Chr6g0300351
rosa_laevigata	RLG00000011345 RLG00000017182
rosa_multiflora	Rmu_sc0001670.1_g000020 Rmu_sc0006537.1_g000014
rosa_roxburghii	Rroxscaffold_2G00140280 Rroxscaffold_7G00167870
rosa_rugosa	Rorug02G0109900 Rorug06G0295200
rosa_samantha	Rh2AG158400 Rh2BG164800 Rh2CG164500 Rh2DG163600 Rh6AG408000 Rh6BG415300 Rh6CG422700 Rh6DG408300
rosa_wichuraiana	Rw2G012320 Rw6G035680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	429
AcsI	RAATTY	1 cut(s)	562
AfiI	CCNNNNNNNGG	1 cut(s)	36
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	5 cut(s)	90, 233, 413, 466, 558
AluBI	AGCT	3 cut(s)	67, 169, 236
AluI	AGCT	3 cut(s)	67, 169, 236
Alw26I	GTCTC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	323
BccI	CCATC	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	2 cut(s)	422, 469
BpuEI	CTTGAG	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	82, 507
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	82, 507
BseGI	GGATG	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	157
Bsp143I	GATC	4 cut(s)	6, 213, 385, 523
Bsp19I	CCATGG	1 cut(s)	507
BspACI	CCGC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	82, 507
BssMI	GATC	4 cut(s)	6, 213, 385, 523
BssT1I	CCWWGG	2 cut(s)	82, 507
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	51, 217
BstDSI	CCRYGG	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	437
BstKTI	GATC	4 cut(s)	9, 216, 388, 526
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	4 cut(s)	6, 213, 385, 523
BstNSI	RCATGY	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuI	GTATCC	1 cut(s)	514
BtgI	CCRYGG	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	437
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	171
CciI	TCATGA	1 cut(s)	271
CviAII	CATG	5 cut(s)	244, 262, 272, 460, 508
CviJI	RGCY	8 cut(s)	21, 28, 67, 102, 108, 169, 236, 278
CviKI_1	RGCY	8 cut(s)	21, 28, 67, 102, 108, 169, 236, 278
DdeI	CTNAG	2 cut(s)	51, 217
DpnI	GATC	4 cut(s)	8, 215, 387, 525
DpnII	GATC	4 cut(s)	6, 213, 385, 523
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	2 cut(s)	82, 507
EcoT14I	CCWWGG	2 cut(s)	82, 507
EcoT22I	ATGCAT	1 cut(s)	437
ErhI	CCWWGG	2 cut(s)	82, 507
FaeI	CATG	5 cut(s)	247, 265, 275, 463, 511
FaiI	YATR	9 cut(s)	59, 105, 245, 263, 273, 437, 461, 492, 509
FatI	CATG	5 cut(s)	243, 261, 271, 459, 507
FokI	GGATG	1 cut(s)	444
FspBI	CTAG	1 cut(s)	473
Hin1II	CATG	5 cut(s)	247, 265, 275, 463, 511
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	1 cut(s)	545
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	569
Hpy188III	TCNNGA	3 cut(s)	156, 272, 527
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	173, 435, 454
HpyF3I	CTNAG	2 cut(s)	51, 217
Hsp92II	CATG	5 cut(s)	247, 265, 275, 463, 511
Kzo9I	GATC	4 cut(s)	6, 213, 385, 523
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	1 cut(s)	204
LweI	GCATC	2 cut(s)	422, 469
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	4 cut(s)	8, 215, 387, 525
MboI	GATC	4 cut(s)	6, 213, 385, 523
MboII	GAAGA	3 cut(s)	16, 111, 119
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	213
MluCI	AATT	4 cut(s)	249, 296, 344, 562
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	6 cut(s)	83, 157, 268, 345, 352, 559
Mph1103I	ATGCAT	1 cut(s)	437
MseI	TTAA	1 cut(s)	63
MunI	CAATTG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	507
NdeII	GATC	4 cut(s)	6, 213, 385, 523
NlaIII	CATG	5 cut(s)	247, 265, 275, 463, 511
NlaIV	GGNNCC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	437
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PscI	ACATGT	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	6, 213, 385, 523
SchI	GAGTC	1 cut(s)	554
SetI	ASST	5 cut(s)	69, 75, 171, 238, 427
SfaNI	GCATC	2 cut(s)	422, 469
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	4 cut(s)	249, 296, 344, 562
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	473
StyI	CCWWGG	2 cut(s)	82, 507
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	280, 469, 551
TasI	AATT	4 cut(s)	249, 296, 344, 562
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	52
TspDTI	ATGAA	4 cut(s)	17, 111, 232, 390
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	52
Tth111I	GACNNNGTC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.