Rmu_sc0001670.1_g000020

calcium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001670.1
OG0005032
Physical Location & Seq
Forward (+)
79643 .. 80170
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001670.1_g000020.1.cds

Sequence Viewer

Length: 528 bp
atgtttaagctaaacctctctttccttggttcaaaacccaaaagccatagcccccctttatcttcatctcttcctactcaaagttgtaacagtgtcgcaagaaatgaggagcttgcaaaagtttttgatcattttgacaccaacaaagacggtaagatctcaggcgacgaacttcaagcttacttcatatcaattggggaacccatgtccactcatgaggctcaaagtgtgataaaagaattggacaatgatggtgataacttgttggagtttgatgacttcgtcaaattgatgaggcgagaggatattgatgccaatgaaaatgacgatctaaagaacgcttttgagatgtttgaagttgataaaggttgcggatgcataacaccaaaaggattgcaaagcatgttcaatcgactaggagatgccaaatcctatgatgagtgtgtatccatggtcggtgtcttcgatcttgacggaaatggagtcctcgatttcaatgaatttcagaagataatgatttcaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_7 EF-hand_8

Protein Analysis

175

Amino Acids

19.52

Weight (kDa)

4.45

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 500
AgsI TTSAA 6 cut(s) 33, 176, 356, 409, 496, 522
AluBI AGCT 3 cut(s) 10, 112, 179
AluI AGCT 3 cut(s) 10, 112, 179
ApoI RAATTY 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 454
BccI CCATC 1 cut(s) 245
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 127
BfaI CTAG 1 cut(s) 416
BfuI GTATCC 1 cut(s) 457
BglII AGATCT 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 3 cut(s) 301, 365, 412
BpiI GAAGAC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 25, 450
BseDI CCNNGG 2 cut(s) 25, 450
BseGI GGATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 122
Bsp143I GATC 4 cut(s) 127, 156, 328, 466
Bsp19I CCATGG 1 cut(s) 450
BspACI CCGC 1 cut(s) 372
BspCNI CTCAG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 25, 450
BssMI GATC 4 cut(s) 127, 156, 328, 466
BssT1I CCWWGG 2 cut(s) 25, 450
Bst4CI ACNGT 2 cut(s) 92, 152
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 4 cut(s) 130, 159, 331, 469
BstMBI GATC 4 cut(s) 127, 156, 328, 466
BstNSI RCATGY 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 454
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 457
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 114
CciI TCATGA 1 cut(s) 214
CviAII CATG 5 cut(s) 205, 215, 403, 451, 525
CviJI RGCY 6 cut(s) 10, 45, 51, 112, 179, 221
CviKI_1 RGCY 6 cut(s) 10, 45, 51, 112, 179, 221
DdeI CTNAG 1 cut(s) 160
DpnI GATC 4 cut(s) 129, 158, 330, 468
DpnII GATC 4 cut(s) 127, 156, 328, 466
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 2 cut(s) 25, 450
EcoT14I CCWWGG 2 cut(s) 25, 450
EcoT22I ATGCAT 1 cut(s) 380
ErhI CCWWGG 2 cut(s) 25, 450
FaeI CATG 5 cut(s) 208, 218, 406, 454, 528
FaiI YATR 9 cut(s) 48, 188, 206, 216, 380, 404, 435, 452, 526
FatI CATG 5 cut(s) 204, 214, 402, 450, 524
FbaI TGATCA 1 cut(s) 127
FokI GGATG 1 cut(s) 387
FspBI CTAG 1 cut(s) 416
Hin1II CATG 5 cut(s) 208, 218, 406, 454, 528
HindIII AAGCTT 1 cut(s) 177
HinfI GANTC 1 cut(s) 483
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 2 cut(s) 215, 470
Hpy8I GTNNAC 1 cut(s) 210
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 92, 152
HpyCH4V TGCA 3 cut(s) 116, 378, 397
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 5 cut(s) 208, 218, 406, 454, 528
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 4 cut(s) 127, 156, 328, 466
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 1 cut(s) 147
LweI GCATC 3 cut(s) 301, 365, 412
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 86
MalI GATC 4 cut(s) 129, 158, 330, 468
MboI GATC 4 cut(s) 127, 156, 328, 466
MboII GAAGA 4 cut(s) 54, 62, 454, 520
MfeI CAATTG 1 cut(s) 192
MflI RGATCY 1 cut(s) 156
MluCI AATT 4 cut(s) 192, 239, 287, 500
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 26, 100, 211, 288, 295, 497
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 1 cut(s) 6
MunI CAATTG 1 cut(s) 192
NcoI CCATGG 1 cut(s) 450
NdeII GATC 4 cut(s) 127, 156, 328, 466
NlaIII CATG 5 cut(s) 208, 218, 406, 454, 528
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 406
PagI TCATGA 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PflFI GACNNNGTC 1 cut(s) 281
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 201
PsuI RGATCY 1 cut(s) 156
PsyI GACNNNGTC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 4 cut(s) 127, 156, 328, 466
SchI GAGTC 1 cut(s) 492
SetI ASST 5 cut(s) 12, 18, 114, 181, 370
SfaNI GCATC 3 cut(s) 301, 365, 412
Sse9I AATT 4 cut(s) 192, 239, 287, 500
SsiI CCGC 1 cut(s) 372
SspMI CTAG 1 cut(s) 416
StyI CCWWGG 2 cut(s) 25, 450
TaaI ACNGT 2 cut(s) 92, 152
TaqI TCGA 3 cut(s) 412, 465, 489
TasI AATT 4 cut(s) 192, 239, 287, 500
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 97
TspDTI ATGAA 4 cut(s) 54, 175, 333, 513
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 1 cut(s) 97
Tth111I GACNNNGTC 1 cut(s) 281
XapI RAATTY 1 cut(s) 500
XceI RCATGY 1 cut(s) 406
XspI CTAG 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.