Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005032

Physical Location & Seq

Genomic Coordinates Reverse (-)

16039028 .. 16039603

Gene Structure 576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G147800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAACAACAACTGACACTAGGGCAATCTCCAAACCCTCCAAATGGTTCTCTAACAAAAGTCTCAAGCTCAGCTTCCCTGGTCGAAGATCATCCAAATCTAGCCCTAAATCTCCTCTGTCCCCGACCAGTGCTCCAGTTGGGCCAATCAGTCCAAGATGGACAAGCAGGGAAGATGAGCTTAGAGAAGTTTTTCGCTATTTCGATGGAGATGGCGATGGCAAAATATCAGCCTCCGAGCTCAGAGCCTATTTTGGGTCCATAGGTGAGTACATGTCTCATGAGGAGGCTGAGGCTGTGATCAAAGATCTTGATGCAGATGGAGACAGCCTGTTAGACTTTGAAGACTTTCTGCAGCTGATGAGCAGAGGAGGAGGAGACGACGAGGACTTGAAGAAGGCCTTCGAGATGTTTGAATTGGAGAAGGGGGTCATAACCCCTAGAAGCTTGCAGAGGATGCTGCATAGGCTTGGTGACACCAAGTCATATAATGAGTGTGTCACCATGATTCAAGTTTTTGATACTGATGGCAATGGGGTGGTTGATTTTAATGAGTTTCATCGAATGATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_6 EF-hand_8

Protein Analysis

192

Amino Acids

21.44

Weight (kDa)

4.99

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50770
fragaria_vesca	FvH4_1g14170 FvH4_1g14170 FvH4_2g40400
malus_domestica	MD08G1037100.v1.1 MD15G1270300.v1.1
prunus_persica	Prupe.1G384400_v2.0.a1 Prupe.7G147800_v2.0.a1
pyrus_communis	pycom08g02950 pycom15g23450
rosa_chinensis	RchiOBHm_Chr2g0102831 RchiOBHm_Chr6g0300351
rosa_laevigata	RLG00000011345 RLG00000017182
rosa_multiflora	Rmu_sc0001670.1_g000020 Rmu_sc0006537.1_g000014
rosa_roxburghii	Rroxscaffold_2G00140280 Rroxscaffold_7G00167870
rosa_rugosa	Rorug02G0109900 Rorug06G0295200
rosa_samantha	Rh2AG158400 Rh2BG164800 Rh2CG164500 Rh2DG163600 Rh6AG408000 Rh6BG415300 Rh6CG422700 Rh6DG408300
rosa_wichuraiana	Rw2G012320 Rw6G035680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	45, 255
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	4 cut(s)	344, 394, 416, 512
AhdI	GACNNNNNGTC	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	6 cut(s)	70, 75, 181, 241, 358, 447
AluI	AGCT	6 cut(s)	70, 75, 181, 241, 358, 447
Alw21I	GWGCWC	2 cut(s)	136, 243
Alw26I	GTCTC	4 cut(s)	68, 282, 318, 372
AoxI	GGCC	2 cut(s)	143, 399
ApeKI	GCWGC	2 cut(s)	355, 460
Asp700I	GAANNNNTTC	3 cut(s)	192, 348, 401
AspS9I	GGNCC	2 cut(s)	143, 258
AsuHPI	GGTGA	3 cut(s)	278, 485, 493
AvaII	GGWCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	2 cut(s)	136, 243
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	367, 447
BccI	CCATC	7 cut(s)	153, 200, 206, 212, 314, 521, 562
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	4 cut(s)	68, 282, 318, 372
BfaI	CTAG	3 cut(s)	21, 102, 441
BfmI	CTRYAG	1 cut(s)	353
BglII	AGATCT	1 cut(s)	307
BisI	GCNGC	2 cut(s)	356, 461
BlpI	GCTNAGC	1 cut(s)	71
BlsI	GCNGC	2 cut(s)	357, 462
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	258
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	143, 258
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	304, 447
BpiI	GAAGAC	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 255
Bse1I	ACTGG	2 cut(s)	129, 137
Bse3DI	GCAATG	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	92, 462
BseLI	CCNNNNNNNGG	2 cut(s)	45, 255
BseMI	GCAATG	1 cut(s)	538
BseMII	CTCAG	3 cut(s)	85, 256, 282
BseNI	ACTGG	2 cut(s)	129, 137
BseRI	GAGGAG	5 cut(s)	105, 299, 384, 387, 390
BseXI	GCAGC	2 cut(s)	367, 447
BshFI	GGCC	2 cut(s)	145, 401
BsiHKAI	GWGCWC	2 cut(s)	136, 243
BslFI	GGGAC	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	45, 255
BsmAI	GTCTC	4 cut(s)	68, 282, 318, 372
BsmBI	CGTCTC	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	145, 401
Bsp1286I	GDGCHC	2 cut(s)	136, 243
Bsp143I	GATC	3 cut(s)	89, 300, 307
Bsp1720I	GCTNAGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	145, 401
BspCNI	CTCAG	3 cut(s)	84, 255, 283
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	129, 137
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	3 cut(s)	89, 300, 307
Bst2UI	CCWGG	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	4 cut(s)	71, 182, 242, 291
BstF5I	GGATG	2 cut(s)	92, 462
BstKTI	GATC	3 cut(s)	92, 303, 310
BstMAI	GTCTC	4 cut(s)	68, 282, 318, 372
BstMBI	GATC	3 cut(s)	89, 300, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 466
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	367, 447
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	145, 401
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	92, 462
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	449
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	143, 258
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	3 cut(s)	274, 281, 505
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	4 cut(s)	71, 182, 242, 291
DpnI	GATC	3 cut(s)	91, 302, 309
DpnII	GATC	3 cut(s)	89, 300, 307
DriI	GACNNNNNGTC	1 cut(s)	481
Eam1105I	GACNNNNNGTC	1 cut(s)	481
Ecl136II	GAGCTC	1 cut(s)	241
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	372
FaeI	CATG	3 cut(s)	277, 284, 508
FaiI	YATR	8 cut(s)	263, 275, 282, 434, 465, 487, 489, 506
FalI	AAGNNNNNCTT	6 cut(s)	59, 91, 165, 197, 386, 418
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	3 cut(s)	273, 280, 504
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	356, 461
FokI	GGATG	2 cut(s)	79, 469
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	2 cut(s)	356, 461
FspBI	CTAG	3 cut(s)	21, 102, 441
GluI	GCNGC	2 cut(s)	356, 461
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	145, 401
Hin1II	CATG	3 cut(s)	277, 284, 508
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	1 cut(s)	508
HphI	GGTGA	3 cut(s)	278, 485, 493
Hpy188I	TCNGA	2 cut(s)	238, 245
Hpy188III	TCNNGA	3 cut(s)	281, 311, 406
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	391, 412, 418
HpyCH4V	TGCA	4 cut(s)	317, 355, 451, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 466
HpyF3I	CTNAG	4 cut(s)	71, 182, 242, 291
Hsp92II	CATG	3 cut(s)	277, 284, 508
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	3 cut(s)	89, 300, 307
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	6 cut(s)	66, 93, 142, 150, 154, 344
Lsp1109I	GCAGC	2 cut(s)	367, 447
LweI	GCATC	2 cut(s)	304, 447
MaeI	CTAG	3 cut(s)	21, 102, 441
MaeIII	GTNAC	2 cut(s)	473, 499
MalI	GATC	3 cut(s)	91, 302, 309
MboI	GATC	3 cut(s)	89, 300, 307
MboII	GAAGA	4 cut(s)	99, 185, 356, 406
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	136, 243
MluCI	AATT	1 cut(s)	416
MroXI	GAANNNNTTC	3 cut(s)	192, 348, 401
MseI	TTAA	2 cut(s)	549, 574
MspA1I	CMGCKG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	457, 466
NdeII	GATC	3 cut(s)	89, 300, 307
NlaIII	CATG	3 cut(s)	277, 284, 508
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	473, 499
NspI	RCATGY	1 cut(s)	277
PagI	TCATGA	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	401
PciI	ACATGT	1 cut(s)	273
PdmI	GAANNNNTTC	3 cut(s)	192, 348, 401
PfeI	GAWTC	1 cut(s)	508
PkrI	GCNGC	2 cut(s)	357, 462
PscI	ACATGT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	143, 258
PstI	CTGCAG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	549, 574
SatI	GCNGC	2 cut(s)	356, 461
Sau3AI	GATC	3 cut(s)	89, 300, 307
Sau96I	GGNCC	2 cut(s)	143, 258
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	136, 243
SetI	ASST	7 cut(s)	72, 77, 183, 243, 268, 360, 449
SfaNI	GCATC	2 cut(s)	304, 447
SfcI	CTRYAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	416
SseBI	AGGCCT	1 cut(s)	401
SspMI	CTAG	3 cut(s)	21, 102, 441
SstI	GAGCTC	1 cut(s)	243
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	79
TaqI	TCGA	4 cut(s)	85, 204, 405, 562
TasI	AATT	1 cut(s)	416
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	2 cut(s)	549, 574
Tru9I	TTAA	2 cut(s)	549, 574
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	473, 499
TseI	GCWGC	2 cut(s)	355, 460
Tsp45I	GTSAC	2 cut(s)	473, 499
TspDTI	ATGAA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	258
XceI	RCATGY	1 cut(s)	277
XmnI	GAANNNNTTC	3 cut(s)	192, 348, 401
XspI	CTAG	3 cut(s)	21, 102, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.