PHD-finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 |
| malus_domestica | MD15G1130200.v1.1 |
| prunus_persica | Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 |
| pyrus_communis | pycom15g11740 |
| rosa_chinensis | RchiOBHm_Chr1g0356281 RchiOBHm_Chr4g0425611 RchiOBHm_Chr6g0297291 |
| rosa_laevigata | RLG00000011614 |
| rosa_multiflora | Rmu_co8471549.1_g000001 Rmu_sc0004535.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00306840 Rroxscaffold_7G00170680 |
| rosa_rugosa | Rorug06G0270300 Rorug06G0270400 Rorug06G0270500 |
| rosa_samantha | Rh6AG381800 Rh6BG389800 Rh6CG395000 Rh6DG381700 |
| rosa_wichuraiana | Rw6G033260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3363 |
| AarI | CACCTGC | 3 cut(s) | 2443, 2774, 4219 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 43, 2313 |
| Acc16I | TGCGCA | 1 cut(s) | 5442 |
| Acc36I | ACCTGC | 4 cut(s) | 441, 2443, 2774, 4219 |
| AccB1I | GGYRCC | 4 cut(s) | 1493, 3320, 5057, 5790 |
| AccBSI | CCGCTC | 1 cut(s) | 6331 |
| AccI | GTMKAC | 1 cut(s) | 5497 |
| AccII | CGCG | 1 cut(s) | 5479 |
| AciI | CCGC | 7 cut(s) | 1707, 4003, 4065, 4617, 5487, 6004, 6331 |
| AclWI | GGATC | 8 cut(s) | 170, 1443, 2171, 2359, 3128, 3496, 4694, 4707 |
| AcoI | YGGCCR | 4 cut(s) | 1584, 1719, 2356, 5136 |
| AcvI | CACGTG | 2 cut(s) | 3236, 5183 |
| AfaI | GTAC | 7 cut(s) | 322, 405, 457, 3813, 5476, 5954, 6101 |
| AfeI | AGCGCT | 2 cut(s) | 5073, 6109 |
| AflIII | ACRYGT | 9 cut(s) | 825, 1041, 2025, 3233, 3235, 3965, 4922, 5985, 6049 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4926 |
| AhlI | ACTAGT | 1 cut(s) | 758 |
| AjiI | CACGTC | 2 cut(s) | 4923, 5988 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4515, 4547 |
| AleI | CACNNNNGTG | 1 cut(s) | 5090 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2161, 2193 |
| Alw21I | GWGCWC | 4 cut(s) | 4373, 4839, 5238, 5548 |
| Alw44I | GTGCAC | 1 cut(s) | 4369 |
| AlwI | GGATC | 8 cut(s) | 170, 1443, 2171, 2359, 3128, 3496, 4694, 4707 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 635, 1004, 2630, 4150 |
| Ama87I | CYCGRG | 1 cut(s) | 5067 |
| Aor51HI | AGCGCT | 2 cut(s) | 5073, 6109 |
| AoxI | GGCC | 9 cut(s) | 983, 1584, 1719, 1825, 2356, 5000, 5136, 5731, 5977 |
| ApaLI | GTGCAC | 1 cut(s) | 4369 |
| ApeKI | GCWGC | 7 cut(s) | 1508, 1793, 2208, 2958, 2969, 3286, 4668 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2422, 2454, 2638, 2670, 5289, 5321 |
| AseI | ATTAAT | 1 cut(s) | 5832 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2263 |
| AspLEI | GCGC | 7 cut(s) | 1281, 4668, 5074, 5443, 5711, 6110, 6435 |
| AspS9I | GGNCC | 9 cut(s) | 562, 1592, 1825, 2246, 3241, 3800, 3921, 5010, 5731 |
| AsuC2I | CCSGG | 3 cut(s) | 946, 960, 1502 |
| AsuHPI | GGTGA | 9 cut(s) | 541, 1027, 1931, 2083, 2087, 3071, 4243, 4292, 5525 |
| AsuNHI | GCTAGC | 1 cut(s) | 2711 |
| AvaI | CYCGRG | 1 cut(s) | 5067 |
| AvaII | GGWCC | 7 cut(s) | 562, 1592, 2246, 3241, 3800, 3921, 5010 |
| AxyI | CCTNAGG | 2 cut(s) | 1872, 5802 |
| BaeGI | GKGCMC | 1 cut(s) | 4373 |
| BalI | TGGCCA | 2 cut(s) | 2358, 5138 |
| BamHI | GGATCC | 1 cut(s) | 4699 |
| BanI | GGYRCC | 4 cut(s) | 1493, 3320, 5057, 5790 |
| BauI | CACGAG | 2 cut(s) | 13, 738 |
| BbrPI | CACGTG | 2 cut(s) | 3236, 5183 |
| BbsI | GAAGAC | 5 cut(s) | 26, 3277, 3620, 3884, 4430 |
| Bbv12I | GWGCWC | 4 cut(s) | 4373, 4839, 5238, 5548 |
| BbvI | GCAGC | 7 cut(s) | 1495, 1780, 2195, 2945, 2981, 3298, 4680 |
| BceAI | ACGGC | 2 cut(s) | 1571, 5718 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 74, 108, 869, 903, 5879, 5913 |
| BciVI | GTATCC | 1 cut(s) | 4459 |
| BclI | TGATCA | 3 cut(s) | 1735, 4585, 5767 |
| BcnI | CCSGG | 3 cut(s) | 946, 960, 1502 |
| BcuI | ACTAGT | 1 cut(s) | 758 |
| BfmI | CTRYAG | 8 cut(s) | 521, 627, 1164, 2044, 2716, 2959, 3622, 4200 |
| BfoI | RGCGCY | 4 cut(s) | 1282, 5075, 6111, 6436 |
| BfuAI | ACCTGC | 4 cut(s) | 441, 2443, 2774, 4219 |
| BfuI | GTATCC | 1 cut(s) | 4459 |
| BglII | AGATCT | 2 cut(s) | 2139, 3997 |
| BisI | GCNGC | 7 cut(s) | 1509, 1794, 2209, 2959, 2970, 3287, 4669 |
| BlsI | GCNGC | 7 cut(s) | 1510, 1795, 2210, 2960, 2971, 3288, 4670 |
| Bme18I | GGWCC | 7 cut(s) | 562, 1592, 2246, 3241, 3800, 3921, 5010 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4926 |
| BmeT110I | CYCGRG | 1 cut(s) | 5067 |
| BmgBI | CACGTC | 2 cut(s) | 4923, 5988 |
| BmgT120I | GGNCC | 9 cut(s) | 562, 1592, 1825, 2246, 3241, 3800, 3921, 5010, 5731 |
| BmrI | ACTGGG | 3 cut(s) | 645, 910, 3933 |
| BmtI | GCTAGC | 1 cut(s) | 2715 |
| BmuI | ACTGGG | 3 cut(s) | 645, 910, 3933 |
| BpiI | GAAGAC | 5 cut(s) | 26, 3277, 3620, 3884, 4430 |
| BpmI | CTGGAG | 3 cut(s) | 1098, 3396, 6366 |
| BpuEI | CTTGAG | 5 cut(s) | 619, 1199, 2128, 3598, 5838 |
| BpuMI | CCSGG | 3 cut(s) | 946, 960, 1502 |
| BsaAI | YACGTR | 4 cut(s) | 3236, 3989, 5183, 6050 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2138 |
| BsaI | GGTCTC | 3 cut(s) | 95, 899, 5269 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 29, 1216, 1246, 4431, 4461, 6024, 6054 |
| Bse118I | RCCGGY | 2 cut(s) | 1007, 3388 |
| Bse21I | CCTNAGG | 2 cut(s) | 1872, 5802 |
| Bse3DI | GCAATG | 6 cut(s) | 38, 909, 2543, 5191, 5788, 6201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2138 |
| BseJI | GATNNNNATC | 1 cut(s) | 2138 |
| BseMI | GCAATG | 6 cut(s) | 38, 909, 2543, 5191, 5788, 6201 |
| BseRI | GAGGAG | 1 cut(s) | 3331 |
| BseSI | GKGCMC | 1 cut(s) | 4373 |
| BseX3I | CGGCCG | 1 cut(s) | 1584 |
| BseXI | GCAGC | 7 cut(s) | 1495, 1780, 2195, 2945, 2981, 3298, 4680 |
| BseYI | CCCAGC | 4 cut(s) | 3446, 3688, 3692, 4703 |
| BsgI | GTGCAG | 4 cut(s) | 2988, 3347, 3369, 5524 |
| Bsh1236I | CGCG | 1 cut(s) | 5479 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1587 |
| BshFI | GGCC | 9 cut(s) | 985, 1586, 1721, 1827, 2358, 5002, 5138, 5733, 5979 |
| BshNI | GGYRCC | 4 cut(s) | 1493, 3320, 5057, 5790 |
| BsiEI | CGRYCG | 1 cut(s) | 1587 |
| BsiHKAI | GWGCWC | 4 cut(s) | 4373, 4839, 5238, 5548 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5067 |
| BsiSI | CCGG | 7 cut(s) | 945, 959, 1008, 1501, 1583, 3389, 5008 |
| BslFI | GGGAC | 4 cut(s) | 992, 1970, 3934, 6347 |
| BsmBI | CGTCTC | 1 cut(s) | 5994 |
| BsmFI | GGGAC | 4 cut(s) | 992, 1970, 3934, 6347 |
| BsmI | GAATGC | 5 cut(s) | 850, 4529, 4868, 5122, 5135 |
| BsnI | GGCC | 9 cut(s) | 985, 1586, 1721, 1827, 2358, 5002, 5138, 5733, 5979 |
| Bso31I | GGTCTC | 3 cut(s) | 95, 899, 5269 |
| BsoBI | CYCGRG | 1 cut(s) | 5067 |
| Bsp1286I | GDGCHC | 4 cut(s) | 4373, 4839, 5238, 5548 |
| Bsp1407I | TGTACA | 1 cut(s) | 5952 |
| Bsp19I | CCATGG | 1 cut(s) | 4503 |
| BspACI | CCGC | 7 cut(s) | 1707, 4003, 4065, 4617, 5487, 6004, 6331 |
| BspANI | GGCC | 9 cut(s) | 985, 1586, 1721, 1827, 2358, 5002, 5138, 5733, 5979 |
| BspFNI | CGCG | 1 cut(s) | 5479 |
| BspHI | TCATGA | 3 cut(s) | 3706, 4168, 5656 |
| BspMAI | CTGCAG | 3 cut(s) | 525, 631, 2963 |
| BspMI | ACCTGC | 4 cut(s) | 441, 2443, 2774, 4219 |
| BspOI | GCTAGC | 1 cut(s) | 2715 |
| BspPI | GGATC | 8 cut(s) | 170, 1443, 2171, 2359, 3128, 3496, 4694, 4707 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 2596 |
| BspT107I | GGYRCC | 4 cut(s) | 1493, 3320, 5057, 5790 |
| BspTNI | GGTCTC | 3 cut(s) | 95, 899, 5269 |
| BsrBI | CCGCTC | 1 cut(s) | 6331 |
| BsrDI | GCAATG | 6 cut(s) | 38, 909, 2543, 5191, 5788, 6201 |
| BsrFI | RCCGGY | 2 cut(s) | 1007, 3388 |
| BsrGI | TGTACA | 1 cut(s) | 5952 |
| BssAI | RCCGGY | 2 cut(s) | 1007, 3388 |
| BssNAI | GTATAC | 1 cut(s) | 5498 |
| BssSI | CACGAG | 2 cut(s) | 13, 738 |
| BssT1I | CCWWGG | 5 cut(s) | 2334, 4503, 5259, 5537, 5974 |
| Bst1107I | GTATAC | 1 cut(s) | 5498 |
| Bst2BI | CACGAG | 2 cut(s) | 13, 738 |
| Bst6I | CTCTTC | 7 cut(s) | 76, 258, 1640, 1668, 2596, 3436, 6345 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 520, 1930, 5004 |
| BstAUI | TGTACA | 1 cut(s) | 5952 |
| BstBAI | YACGTR | 4 cut(s) | 3236, 3989, 5183, 6050 |
| BstDSI | CCRYGG | 2 cut(s) | 1753, 4503 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1826, 2102 |
| BstFNI | CGCG | 1 cut(s) | 5479 |
| BstH2I | RGCGCY | 4 cut(s) | 1282, 5075, 6111, 6436 |
| BstHHI | GCGC | 7 cut(s) | 1281, 4668, 5074, 5443, 5711, 6110, 6435 |
| BstMCI | CGRYCG | 1 cut(s) | 1587 |
| BstSFI | CTRYAG | 8 cut(s) | 521, 627, 1164, 2044, 2716, 2959, 3622, 4200 |
| BstSLI | GKGCMC | 1 cut(s) | 4373 |
| BstUI | CGCG | 1 cut(s) | 5479 |
| BstV1I | GCAGC | 7 cut(s) | 1495, 1780, 2195, 2945, 2981, 3298, 4680 |
| BstV2I | GAAGAC | 5 cut(s) | 26, 3277, 3620, 3884, 4430 |
| BstX2I | RGATCY | 6 cut(s) | 175, 2139, 2351, 3133, 3997, 4699 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2228 |
| BstYI | RGATCY | 6 cut(s) | 175, 2139, 2351, 3133, 3997, 4699 |
| BstZ17I | GTATAC | 1 cut(s) | 5498 |
| BstZI | CGGCCG | 1 cut(s) | 1584 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1872, 5802 |
| BsuI | GTATCC | 1 cut(s) | 4459 |
| BsuRI | GGCC | 9 cut(s) | 985, 1586, 1721, 1827, 2358, 5002, 5138, 5733, 5979 |
| BtgI | CCRYGG | 2 cut(s) | 1753, 4503 |
| BtrI | CACGTC | 2 cut(s) | 4923, 5988 |
| BtsI | GCAGTG | 3 cut(s) | 1595, 5360, 6013 |
| BveI | ACCTGC | 4 cut(s) | 441, 2443, 2774, 4219 |
| CaiI | CAGNNNCTG | 4 cut(s) | 635, 1004, 2630, 4150 |
| CciI | TCATGA | 3 cut(s) | 3706, 4168, 5656 |
| CfoI | GCGC | 7 cut(s) | 1281, 4668, 5074, 5443, 5711, 6110, 6435 |
| Cfr10I | RCCGGY | 2 cut(s) | 1007, 3388 |
| Cfr13I | GGNCC | 9 cut(s) | 562, 1592, 1825, 2246, 3241, 3800, 3921, 5010, 5731 |
| CseI | GACGC | 2 cut(s) | 2397, 3889 |
| Csp6I | GTAC | 7 cut(s) | 321, 404, 456, 3812, 5475, 5953, 6100 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 142, 177, 1584, 1619 |
| CviQI | GTAC | 7 cut(s) | 321, 404, 456, 3812, 5475, 5953, 6100 |
| DraI | TTTAAA | 2 cut(s) | 1431, 3606 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 43, 2313 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4926 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 43, 2313 |
| EaeI | YGGCCR | 4 cut(s) | 1584, 1719, 2356, 5136 |
| EagI | CGGCCG | 1 cut(s) | 1584 |
| Eam1104I | CTCTTC | 7 cut(s) | 76, 258, 1640, 1668, 2596, 3436, 6345 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4926 |
| EarI | CTCTTC | 7 cut(s) | 76, 258, 1640, 1668, 2596, 3436, 6345 |
| EciI | GGCGGA | 1 cut(s) | 4080 |
| EclXI | CGGCCG | 1 cut(s) | 1584 |
| Eco130I | CCWWGG | 5 cut(s) | 2334, 4503, 5259, 5537, 5974 |
| Eco31I | GGTCTC | 3 cut(s) | 95, 899, 5269 |
| Eco32I | GATATC | 2 cut(s) | 4906, 6291 |
| Eco47I | GGWCC | 7 cut(s) | 562, 1592, 2246, 3241, 3800, 3921, 5010 |
| Eco47III | AGCGCT | 2 cut(s) | 5073, 6109 |
| Eco52I | CGGCCG | 1 cut(s) | 1584 |
| Eco72I | CACGTG | 2 cut(s) | 3236, 5183 |
| Eco81I | CCTNAGG | 2 cut(s) | 1872, 5802 |
| Eco88I | CYCGRG | 1 cut(s) | 5067 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1826, 2102 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3800, 3921 |
| EcoRI | GAATTC | 2 cut(s) | 2605, 4354 |
| EcoRV | GATATC | 2 cut(s) | 4906, 6291 |
| EcoT14I | CCWWGG | 5 cut(s) | 2334, 4503, 5259, 5537, 5974 |
| EcoT22I | ATGCAT | 5 cut(s) | 2545, 2803, 4870, 5135, 5313 |
| ErhI | CCWWGG | 5 cut(s) | 2334, 4503, 5259, 5537, 5974 |
| Esp3I | CGTCTC | 1 cut(s) | 5994 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 917, 949, 1619, 1651, 3869, 3901, 4752, 4784 |
| FaqI | GGGAC | 4 cut(s) | 992, 1970, 3934, 6347 |
| FauI | CCCGC | 2 cut(s) | 6011, 6324 |
| FauNDI | CATATG | 3 cut(s) | 1062, 5364, 6361 |
| FbaI | TGATCA | 3 cut(s) | 1735, 4585, 5767 |
| FblI | GTMKAC | 1 cut(s) | 5497 |
| Fnu4HI | GCNGC | 7 cut(s) | 1509, 1794, 2209, 2959, 2970, 3287, 4669 |
| Fsp4HI | GCNGC | 7 cut(s) | 1509, 1794, 2209, 2959, 2970, 3287, 4669 |
| FspAI | RTGCGCAY | 1 cut(s) | 5442 |
| FspI | TGCGCA | 1 cut(s) | 5442 |
| GlaI | GCGC | 7 cut(s) | 1280, 4667, 5073, 5442, 5710, 6109, 6434 |
| GluI | GCNGC | 7 cut(s) | 1509, 1794, 2209, 2959, 2970, 3287, 4669 |
| GsaI | CCCAGC | 4 cut(s) | 3450, 3692, 3696, 4707 |
| GsuI | CTGGAG | 3 cut(s) | 1098, 3396, 6366 |
| HaeII | RGCGCY | 4 cut(s) | 1282, 5075, 6111, 6436 |
| HaeIII | GGCC | 9 cut(s) | 985, 1586, 1721, 1827, 2358, 5002, 5138, 5733, 5979 |
| HapII | CCGG | 7 cut(s) | 945, 959, 1008, 1501, 1583, 3389, 5008 |
| HgaI | GACGC | 2 cut(s) | 2397, 3889 |
| HhaI | GCGC | 7 cut(s) | 1281, 4668, 5074, 5443, 5711, 6110, 6435 |
| Hin6I | GCGC | 7 cut(s) | 1279, 4666, 5072, 5441, 5709, 6108, 6433 |
| HinP1I | GCGC | 7 cut(s) | 1279, 4666, 5072, 5441, 5709, 6108, 6433 |
| HindIII | AAGCTT | 4 cut(s) | 3980, 4793, 5147, 6092 |
| HpaI | GTTAAC | 4 cut(s) | 2323, 2761, 4045, 5668 |
| HpaII | CCGG | 7 cut(s) | 945, 959, 1008, 1501, 1583, 3389, 5008 |
| HphI | GGTGA | 9 cut(s) | 541, 1027, 1931, 2083, 2087, 3071, 4243, 4292, 5525 |
| HspAI | GCGC | 7 cut(s) | 1279, 4666, 5072, 5441, 5709, 6108, 6433 |
| Ksp22I | TGATCA | 3 cut(s) | 1735, 4585, 5767 |
| KspAI | GTTAAC | 4 cut(s) | 2323, 2761, 4045, 5668 |
| LguI | GCTCTTC | 2 cut(s) | 258, 2596 |
| Lsp1109I | GCAGC | 7 cut(s) | 1495, 1780, 2195, 2945, 2981, 3298, 4680 |
| MbiI | CCGCTC | 1 cut(s) | 6331 |
| MfeI | CAATTG | 5 cut(s) | 1663, 2018, 3408, 4075, 4634 |
| MflI | RGATCY | 6 cut(s) | 175, 2139, 2351, 3133, 3997, 4699 |
| MhlI | GDGCHC | 4 cut(s) | 4373, 4839, 5238, 5548 |
| MlsI | TGGCCA | 2 cut(s) | 2358, 5138 |
| MluNI | TGGCCA | 2 cut(s) | 2358, 5138 |
| MlyI | GAGTC | 9 cut(s) | 443, 2084, 3011, 3332, 3422, 3791, 5059, 5171, 5377 |
| MmeI | TCCRAC | 6 cut(s) | 2992, 4513, 4548, 5263, 5879, 6010 |
| Mox20I | TGGCCA | 2 cut(s) | 2358, 5138 |
| Mph1103I | ATGCAT | 5 cut(s) | 2545, 2803, 4870, 5135, 5313 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2263 |
| MscI | TGGCCA | 2 cut(s) | 2358, 5138 |
| MslI | CAYNNNNRTG | 7 cut(s) | 386, 3315, 4173, 5090, 5324, 5832, 6384 |
| Msp20I | TGGCCA | 2 cut(s) | 2358, 5138 |
| MspA1I | CMGCKG | 3 cut(s) | 1709, 3692, 5270 |
| MspI | CCGG | 7 cut(s) | 945, 959, 1008, 1501, 1583, 3389, 5008 |
| MunI | CAATTG | 5 cut(s) | 1663, 2018, 3408, 4075, 4634 |
| Mva1269I | GAATGC | 5 cut(s) | 850, 4529, 4868, 5122, 5135 |
| MvnI | CGCG | 1 cut(s) | 5479 |
| NciI | CCSGG | 3 cut(s) | 946, 960, 1502 |
| NcoI | CCATGG | 1 cut(s) | 4503 |
| NdeI | CATATG | 3 cut(s) | 1062, 5364, 6361 |
| NheI | GCTAGC | 1 cut(s) | 2711 |
| NmeAIII | GCCGAG | 1 cut(s) | 3571 |
| NmuCI | GTSAC | 4 cut(s) | 388, 547, 2924, 3229 |
| NsbI | TGCGCA | 1 cut(s) | 5442 |
| NsiI | ATGCAT | 5 cut(s) | 2545, 2803, 4870, 5135, 5313 |
| OliI | CACNNNNGTG | 1 cut(s) | 5090 |
| PaeI | GCATGC | 2 cut(s) | 884, 1928 |
| PaeR7I | CTCGAG | 1 cut(s) | 5067 |
| PagI | TCATGA | 3 cut(s) | 3706, 4168, 5656 |
| PaqCI | CACCTGC | 3 cut(s) | 2443, 2774, 4219 |
| PasI | CCCWGGG | 1 cut(s) | 875 |
| PciI | ACATGT | 4 cut(s) | 825, 1041, 2025, 3965 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 2596 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 3241, 5074 |
| PctI | GAATGC | 5 cut(s) | 850, 4529, 4868, 5122, 5135 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2263 |
| PflFI | GACNNNGTC | 1 cut(s) | 1536 |
| PfoI | TCCNGGA | 5 cut(s) | 944, 958, 1500, 5386, 6343 |
| PkrI | GCNGC | 7 cut(s) | 1510, 1795, 2210, 2960, 2971, 3288, 4670 |
| PleI | GAGTC | 9 cut(s) | 443, 2084, 3010, 3332, 3422, 3790, 5059, 5171, 5377 |
| PmaCI | CACGTG | 2 cut(s) | 3236, 5183 |
| PmlI | CACGTG | 2 cut(s) | 3236, 5183 |
| PpsI | GAGTC | 9 cut(s) | 443, 2084, 3010, 3332, 3422, 3790, 5059, 5171, 5377 |
| Ppu21I | YACGTR | 4 cut(s) | 3236, 3989, 5183, 6050 |
| PpuMI | RGGWCCY | 2 cut(s) | 3800, 3921 |
| PscI | ACATGT | 4 cut(s) | 825, 1041, 2025, 3965 |
| PshBI | ATTAAT | 1 cut(s) | 5832 |
| PsiI | TTATAA | 1 cut(s) | 3363 |
| Psp5II | RGGWCCY | 2 cut(s) | 3800, 3921 |
| PspCI | CACGTG | 2 cut(s) | 3236, 5183 |
| PspFI | CCCAGC | 4 cut(s) | 3446, 3688, 3692, 4703 |
| PspPI | GGNCC | 9 cut(s) | 562, 1592, 1825, 2246, 3241, 3800, 3921, 5010, 5731 |
| PspPPI | RGGWCCY | 2 cut(s) | 3800, 3921 |
| PspXI | VCTCGAGB | 1 cut(s) | 5067 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4918, 4950 |
| PstI | CTGCAG | 3 cut(s) | 525, 631, 2963 |
| PstNI | CAGNNNCTG | 4 cut(s) | 635, 1004, 2630, 4150 |
| PsuI | RGATCY | 6 cut(s) | 175, 2139, 2351, 3133, 3997, 4699 |
| PsyI | GACNNNGTC | 1 cut(s) | 1536 |
| PvuII | CAGCTG | 2 cut(s) | 3692, 5270 |
| RsaI | GTAC | 7 cut(s) | 322, 405, 457, 3813, 5476, 5954, 6101 |
| RsaNI | GTAC | 7 cut(s) | 321, 404, 456, 3812, 5475, 5953, 6100 |
| RseI | CAYNNNNRTG | 7 cut(s) | 386, 3315, 4173, 5090, 5324, 5832, 6384 |
| SapI | GCTCTTC | 2 cut(s) | 258, 2596 |
| SatI | GCNGC | 7 cut(s) | 1509, 1794, 2209, 2959, 2970, 3287, 4669 |
| Sau96I | GGNCC | 9 cut(s) | 562, 1592, 1825, 2246, 3241, 3800, 3921, 5010, 5731 |
| SchI | GAGTC | 9 cut(s) | 443, 2084, 3011, 3332, 3422, 3791, 5059, 5171, 5377 |
| SduI | GDGCHC | 4 cut(s) | 4373, 4839, 5238, 5548 |
| SfcI | CTRYAG | 8 cut(s) | 521, 627, 1164, 2044, 2716, 2959, 3622, 4200 |
| Sfr274I | CTCGAG | 1 cut(s) | 5067 |
| SinI | GGWCC | 7 cut(s) | 562, 1592, 2246, 3241, 3800, 3921, 5010 |
| SlaI | CTCGAG | 1 cut(s) | 5067 |
| SmiI | ATTTAAAT | 1 cut(s) | 3606 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 386, 3315, 4173, 5090, 5324, 5832, 6384 |
| SmlI | CTYRAG | 6 cut(s) | 598, 1214, 2143, 3577, 5067, 5853 |
| SmoI | CTYRAG | 6 cut(s) | 598, 1214, 2143, 3577, 5067, 5853 |
| SpeI | ACTAGT | 1 cut(s) | 758 |
| SphI | GCATGC | 2 cut(s) | 884, 1928 |
| SsiI | CCGC | 7 cut(s) | 1707, 4003, 4065, 4617, 5487, 6004, 6331 |
| SspI | AATATT | 5 cut(s) | 658, 1522, 2264, 4237, 5599 |
| StyI | CCWWGG | 5 cut(s) | 2334, 4503, 5259, 5537, 5974 |
| SwaI | ATTTAAAT | 1 cut(s) | 3606 |
| TaqII | GACCGA | 1 cut(s) | 4273 |
| TatI | WGTACW | 5 cut(s) | 320, 455, 3811, 5952, 6099 |
| TseFI | GTSAC | 4 cut(s) | 388, 547, 2924, 3229 |
| TseI | GCWGC | 7 cut(s) | 1508, 1793, 2208, 2958, 2969, 3286, 4668 |
| Tsp45I | GTSAC | 4 cut(s) | 388, 547, 2924, 3229 |
| TspGWI | ACGGA | 3 cut(s) | 1324, 2389, 4519 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1536 |
| VneI | GTGCAC | 1 cut(s) | 4369 |
| VpaK11BI | GGWCC | 7 cut(s) | 562, 1592, 2246, 3241, 3800, 3921, 5010 |
| VspI | ATTAAT | 1 cut(s) | 5832 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1826, 2102 |
| XbaI | TCTAGA | 2 cut(s) | 2444, 4831 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1819 |
| XhoI | CTCGAG | 1 cut(s) | 5067 |
| XmiI | GTMKAC | 1 cut(s) | 5497 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2263 |
| Zsp2I | ATGCAT | 5 cut(s) | 2545, 2803, 4870, 5135, 5313 |