RchiOBHm_Chr6g0297291

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004222
Physical Location & Seq
Forward (+)
59012253 .. 59024564
12312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26681

Sequence Viewer

Length: 6441 bp
ATGGAGAACTGCTGGATGAACAAATGTAATTCGACATTGCCTTCAATAGCTTCGTCGTCTTCTCAGGAGCTTCGGAATCAGATGGAGAATGCAGGCTATTTTTCTTGTCCGCATGGCTCACAAGATTTGAGACCGGCGATGCTTGGTAGGTTGCAGGATCCTCTGCTTACCAGCATCCAGAGTTCAGGTTCCCACAGATCAGAACATGTTAATTTGGGAAATTCTTTTCTGTCTCTCCTATCTGGGTCGCCATCACTATTGCAGCGTGATTTTCAAGATTTCTCAAATTCCCAACCTATTGGTACCTCTGGTAAAATTCTACCCGAGGGTAATAATTCCATTCTAAACGGTACTCAAAATGCCATCCCATTGTCATCCATCGGGCTACCATCAGAAAAGTTGAGTTGGAAAAATCTGCAAAGTGGAGCAGACTTCTGTCCCAATGGATCATCAAAGGTAGTGCCAAGTTCCATTTGTGCCAGCAATTCTGTATTGCATGATCTGCAGAGTTCAGACCTGGCCAAGGTAGTCATCTGTCACATGGGCCCTGGTAATGAGAAACTAAAGACTTCTTATGCCTCGAGTGGGGAATGGCACAGTGCTGCTCCTGCATCTAGAGGAAATATTCAAATTTCCGAAAAAATGCCACTGGAAGCAAACACCTTCGTATCTAATCAGGCATCTAGAGTATGTCATAGCGCTAGTCCTGCAGATTCATGGAAGGCTTGTAGAGAAAATATTCATACTTCACAAAAAATACCACCGGAAGCAAACTCTTTTATTTCTTATCAGGCATCTAGTTTATGGCATGGCGCCAGTCCTGCAGACACTGGGAAGGCTTGTAGAGCTAACATTGAAACTTCACCAAAAATGCCAGTGGAAGCATACTCTTTTATATCTAACCAGCCACCCAGTTTTATGAATGGTTGCCCTCGTGTTTTCTGCTCGACTACTAGTGGCTATCTACTTCTTAGCAATACAGGACTTCTTGGTATTGTTTGCTCTTGCCATTCTTTCCGCATGTCTGCGTTTAAGTTTTGTGAGCATTCAGGATTATACGGTGTTAACCCAGGGGATGCCATTCGCATGGACAGTGGAGAGACCATTGCTCAATGGTGCAAGCTCTATCTCCTGAAGTTTGGGATTAGGATCCCTGCAGATAAGAATGAATGGGACTGGCCTGAAGAATTATCAGCGACTGCCAGTTGGATGAAATCTAGTGTGCCTATGCCAAAGATATCCAATAGCTCGTCTGATTTGGTCTTTTCACCTGGAGGTTCAGTAAGTTCTAAACAGTCTTTTGATGGTGTTTCGCTATCAAAGAATTTTATTCCAAGCCAGAGTTTGGTTATTAGTGCTGTATCAAATAAACCCGAAAGGGCATCATCAGATAGACCCGAAAGGAACATTCAGGGTACTAACAACCTGTTTCTCAAGGCTTTGACTGGTACTTCACAGAGCAATTTGCATATGGCAGATAACCTGCTAATGGAGCGTGCCATGTCAACATCAAAGTTAGTTGGTGATGGAGCACAAGATGGTTGTCAGTCTATTTCTGCTTATAGTGGATCTATGCACAATAGAACCTCTTCCATTGCCCACTCCACTTTACAGGAACGAAGAATCATTGGTACAGAATCAGACTTTTGCAGAATTGAAAACACAAAGGATGGTGCCTTCCGGGATCCTGCGATTTCAAATATAGAGCTGAGGCTTGGTCAACCTTACCAGTTGGCTCAAACTTCAGGAACTCCTGATCTGTCAGCTGTAGGACCACCGCTCTTGGGCACTGTCGTAAATCCAATGAAATCTCTCTTCCCTCAACAGATGATTGTTAACAGAGCGAATTGCAGGGAAGAGGTGGAATTGGGGCAATGTGATCATTTTTCTGTGGACCCATCCAATCCCAGCAGAAATAGAGATCGGAACCAGTTAAACCATGGAATCAATGCATTTGTAATCAGGAATGCCATAGATGATGAAAGGGTAGAGAAATCCAGTAGCAACCTGGGCCAGAATTCTGTGATTTCAGTTCTTACCAATCTCAAATCTCCATCTAACGAAAATACACAATCAAAAGCCAATAACTATATGTTCAATGACAGTGGGAATACTATGAGAAATACACTACATTCTGAACCTCTACCTGTCAAGTATGACCTGGCTACTGTCCTGCGGAGTGCAGGTAATAGTGAAAGGCAACAAGACATGTCGCACTTTGGCTCCTATAAACTAAAAGACAATGATAAAGGGCTGAGTTTTGCTGCTGATGGCTCTTACCTTGCAAAGGATTTGGGGTATAGAATATGTAAGGAAATGGAAGTTTCTAGCTCTTTCAATAGGTTGAGTGGTAATGGTGAACCTAATTTTTTAACAGCATATAGAAACAGCTGCTACTCACAGCAGCTGTCTGGTATACCACTGGGTACACCTGATTCCAGAATAAGTTCCAGCTATCCTGAGAAGGTTATTTCTTTTGCAAATAGTGGGCAAGTTGATCATGTCTGCCTTCGGCCCTTGGCTTCATCTATGGGATCTGGGATGAAAGTTCCTACTCAGGCAGTCTCAAAAGGTGTTCCTGTGAGTGCATCAACCTCTTTAGCAGATCTGATACCACCTTTCTGTAGGGAAGAGTTCATTGGAGTTCACACTCATTTGCGTGATGATAAATTACAAGTGTCTGCACCCAGGCAAATGCAAGAGATATCGAAGCAACCGCATGCGCTGCCTTCCCTTTCTAAGAACCAAGGGGAAGGAAGATTTGGTTGCTCTTCCTATATGCAGCATCCTCTTCTAGAAACTTCAGCATCTGGGAAGCAAAGCCACAAACATAGTCTTAGCAGTAAATATGATGTTTCTGAAGCTGCAGTTAATCCACGCCAATCTGGTGTTACCTGTAGGATTGGAACTGATGAAGGTTTCGTTTCCATGACAGGTGTTAACTGCTGTTGTCACTTCTCACGATATAAACAACGAAATGCATTAGATTCTAAAGAAGTTGATCTGAAACATCAAATTGGGCAGCCCTCACCAAGGATTGGAAAGAAGTCCAATAATGTCCCTGAGCCTAGTGAGCAAGAAAGGTGCTGTCACAAAGTGCCCTGTGGTAATTTTCATGGCAGCTCCAGTTGTGCAGCCTACAGAAACTGTTTAGAAAGGAATTTTGAATCAAGAATTGGAAGCTTACCTACTGTGTCCAAGGGTCAAATGGGAACAGTCAATAGTGAAGTCTCTATGATATTTTCTCCACAATTTGCTAACAGCCAAATTATTCCGAAGGATAAACCTGTTTCCTTAGATCATAAGAGAAAGTTGAGTGGAGAAGTACCCAATAACAATGCTTATCATACTTCTCAGTGGAGAGATGTGCCAAGTAAGGTCAAAGGGGTTTCTGACGTGACGCGTGTGGACCGTTTAGCTAATCTGTTTGATGCAACAAGAGAAGACCGAGAGAAACTTGGAGATACTTGCGTTAAATGCTTCAATGGGACTGTGCAGATGGCGAACTCCATGAAAGAGCATGAAGTATCTGATATATCTTCTGGATGCTCTGCGCCCGCGGTTAGTCAGCCATCAATAGAGGTTAACAATATGGGTTCTTCAACTAATGATGCCGGGGATAATGGATGTGGAAGCAATTTTGTTGTTGATGAAGGATCAGGCATTGACAAAGCGTGGTCATCGGATGATGCACTTGAAAGTGAAAAAGGTGCCGAGTTCCTTGCCTCTACTGGTTCCAGCCTGAGAAAAGTCGGGCCTCCCAAGAATTTAAATCGTCAATCTTCATCTTGCCTTCTTGATGACCTTAAACTCCTAAACTCTTTAACATGGCAGAAGGGTCGAGATCATATCCCAGCTGGGCTCGCCCTTCATGATAAAGACAAACATCTTCATAACTTGGAACAAGGCTTGAATATTAAGAAGAGAAAGAGAGAACTGGGATTGAAATTGAATGCTTCATGTCCCAGTTCAGATTTTTCTCGAGTAAGACAAGAGAATCCCAAAAGTAATGGCACTTCTCAGTTTATTTCCCGACCATCGAAGAGTTTAAAGATGCTTTTAACATCAGGGAAATCGGAAACTCATGCCATTGGGAACTGCATTACTCAATCTGGTTCTAAACGCAGACTACATATATCATGTTCAGCAAAGAAGCTCTTGCGTAGAAGTGGTTTACACAGACTACATAATGATAAAGACAGTGAAGTAAATAGTGTTTTCCCGAGAGAACTAAATGGTGGTACTAACAATTATGAAATTGCTGAAGTTTCTGGTGGGGAGACAGGTAAAAGAGATTGCAGTACCAATGCTTTTAGTCAGTTCCAAATAGAAGAATCTAGTCAAGAAGATGCTAAAAAAACAAAGTGCAATTCTGTAGATGGTTTCAAATCAACTTCTAGTCAGCAAGTGAATATTGGTCATAGGAAGGCAAGGCCAATAGTATGCGGAATATATGGTGAATTAACTGATGGAAGCTTGACTGGACAAATGTCAAAACCGGCAAAACTTGTTCCTCTCAGCAGGGTTCTTAATTCTTCCCGAAAGTGCATGCTCCCCAAACATTGCAACTCTAAATCAACTTCCATGAGGAAGAGGAACCTTGGTGGGGATGTCATATGCAATACATATGACTTGAAGACTGAAAAATACAACAAATGTTGTAATGCTACAGTTAAAATCAATGATACTTCCATGAGAAAAAAGAAGAAAGAACGCTCCACTGGAGATGGGGAATTTCATAAAGAGCTGTTCTCGTTGGAGAAACAAGGAGATGCTCAAAGTGAAAAGGATCATCGTAAGCTAGACGGTATTACCCATACTCAATCGCAGCTGAAGCCTAAGGAAATTCGGAAACGCAGCATATATGAATTGACAGAAAAAGGGGAGGATCCTGGCTTTAAAAGTTCTTCCGTCTCAAAGATTTCAATTTGCCTGCCAGCAATGAAAGACTGCAAACTTCTAAATACCGGTGAAGTTAGTGGATTATGCCAACATAGTGCTAAAAACAAATTCCGGTGCAGTTCTACTCAAGAGCACTGGTGCCATAGTGATCTCGACTCAGTTGCATTCTGCTGTGTCTGTGGTAGCTCAAACCAAGATGAAATCAATAACTTATTGGAGTGTAGTCAATGTTTAATCAGAGTGCATCAGGCTTGTTATGGTGTGTCAAAAGTACCTAAGGGCCGTTGGTCTTGCAGGCCATGTCGGACGAGTTCAAAAGATATTGTATGCGTTCTTTGTGGTTATGGTGCTGGTGCCATGACTCAAGCACTGCGGAGTCAGACAATTGTTGAAAGCATTTTAAGAGCTTGGAACATTGAAACAGAAAGTGGGCCCAAGAATGAGCTTTGTTCTGTTAGTAAGACTAAGGTACATAACAGCATTACCATGGGATTAGTTGATTCAGCAACTAAACAGTGGGTTCATATGGTTTGTGGGCTTTGGACTCCTGAAACACGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTCCAGTCCCTACTGCAGATATGGTTTGCTGTATGTGTAAGCGAGCAGGTGGCTCCTGTATACAGTGCAGGGTTGAAAATTGTTCTGTTCGATTTCACCCATGGTGTGCTCATCTGAAGGGTCTGTTGCAAACCGAGGTTGAAGGCATTGACAATGAGAATGTTGGTTTTTATGGAAGATGTTCACTTCATGCTACACATCCCATTTGTAAATCAGACTATCCTGTTGACACTGACTCTGGTTGTCTGGAGGAAAAGAAATTAGCCTGTGCCAGAACTGAGGGTTACAAGGGCCGTAAACGTGATGGCTTCAGGCATAACTATTGTGATCGATCGAAAGGAAGTGATGGATCCCTTGTTCCTCAGGAGCAGTTAAATGCTTGGGCTTATATTAACGGGCATAAGTCATGCACACAGGAGCTTCCTAAACTGGCAGTATCTGATATAGAGCACGACTCTCGGAAAGAATACACACGCTATAAGCAAGCAAAGTCTTGGAAGCATCTTGTAGTATACAAGTCCGGCATACATGCCCTTGGTCTTTACACATCTCGGTTCATTTCCCGTGATGAAATGGTTGTTGAGTATGTTGGAGAGATTGTGGGGCAACGTGTTGCTGATAAAAGGGAAAATGAATATCAATCTGGAAAAAAGCTTCAGTACAAGAGCGCTTGCTACTTTTTCAGGATAGACAAAGAGCACATCATTGATGCTACATGCAAAGGAGGGATTGCTCGATTTGTTAATCATTCCTGCTCGCCAAATTGCGTTGCCAAAGTGATATCAGTGAGGAATGAAAAGAAGGTTGTATTTCTTGCAGAGAGGGACATTTTCCCGGGAGAAGAGATTACATATGACTACCATTTTAACCATGAGGATGAAGGTAAGAAGATTCCATGTTCTTGCAACTCAAAGAATTGCAGGCGCTACTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

2146

Amino Acids

235.62

Weight (kDa)

8.7

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 328 - 374 2.5e-13 Tify domain binding domain
PHD_2 PF13831 1703 - 1735 1.1e-08 PHD-finger
zf-HC5HC2H_2 PF13832 1802 - 1886 4.2e-17 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1809 - 1898 4.6e-13 PHD-like zinc-binding domain
SET PF00856 2013 - 2121 2.1e-24 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 5540
Acc36I ACCTGC 3 cut(s) 1491, 2174, 5540
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 6 cut(s) 302, 812, 1673, 3710, 5040, 5255
AccB7I CCANNNNNTGG 2 cut(s) 1345, 3038
AccBSI CCGCTC 1 cut(s) 1780
AccI GTMKAC 3 cut(s) 2416, 5563, 6015
AccII CGCG 2 cut(s) 3403, 3560
AciI CCGC 9 cut(s) 110, 1018, 1778, 2176, 2717, 3558, 3560, 4446, 5275
AcoI YGGCCR 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 813
AdeI CACNNNGTG 1 cut(s) 3097
AfeI AGCGCT 2 cut(s) 700, 6172
AfiI CCNNNNNNNGG 9 cut(s) 523, 585, 1345, 1489, 1784, 2287, 3033, 3038, 4606
AflIII ACRYGT 4 cut(s) 205, 2208, 3401, 6112
AgeI ACCGGT 1 cut(s) 4967
AhlI ACTAGT 1 cut(s) 953
AjiI CACGTC 1 cut(s) 3397
AjnI CCWGG 8 cut(s) 516, 547, 1069, 1270, 2007, 2160, 2687, 4891
AjuI GAANNNNNNNTTGG 6 cut(s) 2622, 2654, 2745, 2777, 3159, 3191
AloI GAACNNNNNNTCC 2 cut(s) 5844, 5876
Alw21I GWGCWC 5 cut(s) 1534, 5037, 5614, 5955, 6204
Alw26I GTCTC 7 cut(s) 124, 237, 1094, 2569, 3235, 4274, 4918
AlwNI CAGNNNCTG 6 cut(s) 830, 1199, 2407, 2810, 3147, 5942
Ama87I CYCGRG 5 cut(s) 323, 580, 3981, 4222, 6337
Aor51HI AGCGCT 2 cut(s) 700, 6172
ApaI GGGCCC 2 cut(s) 548, 5337
AsiGI ACCGGT 1 cut(s) 4967
Asp700I GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5683
Asp718I GGTACC 1 cut(s) 302
AspLEI GCGC 6 cut(s) 701, 815, 2725, 3556, 6173, 6429
AsuC2I CCSGG 4 cut(s) 1682, 3616, 6338, 6339
AsuHPI GGTGA 8 cut(s) 855, 1260, 1535, 2369, 3021, 4469, 4982, 5591
AvaI CYCGRG 5 cut(s) 323, 580, 3981, 4222, 6337
AvaII GGWCC 3 cut(s) 1772, 1894, 3409
AxyI CCTNAGG 3 cut(s) 4839, 5178, 5865
BaeGI GKGCMC 4 cut(s) 548, 1790, 3102, 5337
BaeI ACNNNNGTAYC 4 cut(s) 651, 684, 3456, 3489
BalI TGGCCA 1 cut(s) 521
BamHI GGATCC 5 cut(s) 157, 1149, 1684, 4888, 5852
BanI GGYRCC 6 cut(s) 302, 812, 1673, 3710, 5040, 5255
BanII GRGCYC 3 cut(s) 548, 3864, 5337
BarI GAAGNNNNNNTAC 4 cut(s) 3172, 3204, 4000, 4032
BauI CACGAG 1 cut(s) 933
BbsI GAAGAC 3 cut(s) 51, 3450, 4643
Bbv12I GWGCWC 5 cut(s) 1534, 5037, 5614, 5955, 6204
BbvCI CCTCAGC 1 cut(s) 1709
BceAI ACGGC 2 cut(s) 5169, 5781
BcgI CGANNNNNNTGC 8 cut(s) 3704, 3738, 3821, 3855, 5045, 5079, 5942, 5976
BciT130I CCWGG 8 cut(s) 518, 549, 1071, 1272, 2009, 2162, 2689, 4893
BclI TGATCA 2 cut(s) 1879, 2497
BcnI CCSGG 4 cut(s) 1682, 3616, 6338, 6339
BcoDI GTCTC 7 cut(s) 124, 237, 1094, 2569, 3235, 4274, 4918
BcuI ACTAGT 1 cut(s) 953
BfoI RGCGCY 4 cut(s) 702, 816, 6174, 6430
BfuAI ACCTGC 3 cut(s) 1491, 2174, 5540
BglII AGATCT 1 cut(s) 2605
Bme18I GGWCC 3 cut(s) 1772, 1894, 3409
BmeT110I CYCGRG 5 cut(s) 323, 580, 3981, 4222, 6337
BmgBI CACGTC 1 cut(s) 3397
BmrI ACTGGG 5 cut(s) 840, 906, 2432, 3947, 3960
BmuI ACTGGG 5 cut(s) 840, 906, 2432, 3947, 3960
BoxI GACNNNNGTC 2 cut(s) 435, 4489
BpiI GAAGAC 3 cut(s) 51, 3450, 4643
BplI GAGNNNNNCTC 4 cut(s) 4736, 4768, 5942, 5974
BpmI CTGGAG 4 cut(s) 1293, 3109, 4743, 5771
Bpu10I CCTNAGC 2 cut(s) 1709, 3063
BpuEI CTTGAG 3 cut(s) 1418, 5013, 5250
BpuMI CCSGG 4 cut(s) 1682, 3616, 6338, 6339
Bsa29I ATCGAT 1 cut(s) 5833
BsaBI GATNNNNATC 1 cut(s) 1148
BsaHI GRCGYC 1 cut(s) 813
BsaI GGTCTC 2 cut(s) 124, 1094
BsaWI WCCGGW 3 cut(s) 763, 4967, 5013
BsaXI ACNNNNNCTCC 8 cut(s) 1266, 1296, 2170, 2200, 2207, 2237, 6087, 6117
Bsc4I CCNNNNNNNGG 9 cut(s) 523, 585, 1345, 1489, 1784, 2287, 3033, 3038, 4606
Bse118I RCCGGY 3 cut(s) 133, 4498, 4967
Bse21I CCTNAGG 3 cut(s) 4839, 5178, 5865
Bse3DI GCAATG 6 cut(s) 35, 1104, 1593, 1880, 4561, 4947
Bse8I GATNNNNATC 1 cut(s) 1148
BseBI CCWGG 8 cut(s) 518, 549, 1071, 1272, 2009, 2162, 2689, 4893
BseCI ATCGAT 1 cut(s) 5833
BseJI GATNNNNATC 1 cut(s) 1148
BseLI CCNNNNNNNGG 9 cut(s) 523, 585, 1345, 1489, 1784, 2287, 3033, 3038, 4606
BseMI GCAATG 6 cut(s) 35, 1104, 1593, 1880, 4561, 4947
BseSI GKGCMC 4 cut(s) 548, 1790, 3102, 5337
BseYI CCCAGC 3 cut(s) 1907, 3853, 3857
BsgI GTGCAG 6 cut(s) 2202, 2667, 3153, 3515, 5038, 5590
Bsh1236I CGCG 2 cut(s) 3403, 3560
Bsh1285I CGRYCG 1 cut(s) 5837
BshNI GGYRCC 6 cut(s) 302, 812, 1673, 3710, 5040, 5255
BshTI ACCGGT 1 cut(s) 4967
BshVI ATCGAT 1 cut(s) 5833
BsiEI CGRYCG 1 cut(s) 5837
BsiHKAI GWGCWC 5 cut(s) 1534, 5037, 5614, 5955, 6204
BsiHKCI CYCGRG 5 cut(s) 323, 580, 3981, 4222, 6337
BsiSI CCGG 9 cut(s) 134, 764, 1681, 3615, 4499, 4968, 5014, 6024, 6338
BslFI GGGAC 7 cut(s) 423, 1187, 3044, 3502, 3948, 5495, 6341
BslI CCNNNNNNNGG 9 cut(s) 523, 585, 1345, 1489, 1784, 2287, 3033, 3038, 4606
BsmAI GTCTC 7 cut(s) 124, 237, 1094, 2569, 3235, 4274, 4918
BsmBI CGTCTC 1 cut(s) 4918
BsmFI GGGAC 7 cut(s) 423, 1187, 3044, 3502, 3948, 5495, 6341
BsmI GAATGC 5 cut(s) 94, 1045, 1972, 3958, 5066
Bso31I GGTCTC 2 cut(s) 124, 1094
BsoBI CYCGRG 5 cut(s) 323, 580, 3981, 4222, 6337
Bsp120I GGGCCC 2 cut(s) 544, 5333
Bsp19I CCATGG 3 cut(s) 1939, 5388, 5603
BspACI CCGC 9 cut(s) 110, 1018, 1778, 2176, 2717, 3558, 3560, 4446, 5275
BspDI ATCGAT 1 cut(s) 5833
BspFNI CGCG 2 cut(s) 3403, 3560
BspHI TCATGA 1 cut(s) 3871
BspMAI CTGCAG 6 cut(s) 507, 712, 826, 1159, 2869, 5521
BspMI ACCTGC 3 cut(s) 1491, 2174, 5540
BspQI GCTCTTC 1 cut(s) 2776
BspT107I GGYRCC 6 cut(s) 302, 812, 1673, 3710, 5040, 5255
BspTNI GGTCTC 2 cut(s) 124, 1094
BsrBI CCGCTC 1 cut(s) 1780
BsrDI GCAATG 6 cut(s) 35, 1104, 1593, 1880, 4561, 4947
BsrFI RCCGGY 3 cut(s) 133, 4498, 4967
BssAI RCCGGY 3 cut(s) 133, 4498, 4967
BssNAI GTATAC 3 cut(s) 2417, 5564, 6016
BssNI GRCGYC 1 cut(s) 813
BssSI CACGAG 1 cut(s) 933
Bst1107I GTATAC 3 cut(s) 2417, 5564, 6016
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 8 cut(s) 518, 549, 1071, 1272, 2009, 2162, 2689, 4893
BstACI GRCGYC 1 cut(s) 813
BstAPI GCANNNNNTGC 2 cut(s) 502, 2725
BstDSI CCRYGG 4 cut(s) 1939, 3558, 5388, 5603
BstENI CCTNNNNNAGG 3 cut(s) 521, 2285, 3031
BstFNI CGCG 2 cut(s) 3403, 3560
BstH2I RGCGCY 4 cut(s) 702, 816, 6174, 6430
BstHHI GCGC 6 cut(s) 701, 815, 2725, 3556, 6173, 6429
BstMAI GTCTC 7 cut(s) 124, 237, 1094, 2569, 3235, 4274, 4918
BstMCI CGRYCG 1 cut(s) 5837
BstNI CCWGG 8 cut(s) 518, 549, 1071, 1272, 2009, 2162, 2689, 4893
BstNSI RCATGY 7 cut(s) 209, 1024, 2212, 2723, 4552, 6035, 6222
BstPAI GACNNNNGTC 2 cut(s) 435, 4489
BstSLI GKGCMC 4 cut(s) 548, 1790, 3102, 5337
BstUI CGCG 2 cut(s) 3403, 3560
BstV2I GAAGAC 3 cut(s) 51, 3450, 4643
BstX2I RGATCY 8 cut(s) 157, 1149, 1568, 1684, 2534, 2605, 4888, 5852
BstXI CCANNNNNNTGG 2 cut(s) 299, 1087
BstYI RGATCY 8 cut(s) 157, 1149, 1568, 1684, 2534, 2605, 4888, 5852
BstZ17I GTATAC 3 cut(s) 2417, 5564, 6016
Bsu15I ATCGAT 1 cut(s) 5833
Bsu36I CCTNAGG 3 cut(s) 4839, 5178, 5865
BsuTUI ATCGAT 1 cut(s) 5833
BtgI CCRYGG 4 cut(s) 1939, 3558, 5388, 5603
BtgZI GCGATG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 3397
BtsI GCAGTG 1 cut(s) 5270
BveI ACCTGC 3 cut(s) 1491, 2174, 5540
CaiI CAGNNNCTG 6 cut(s) 830, 1199, 2407, 2810, 3147, 5942
CciI TCATGA 1 cut(s) 3871
CfoI GCGC 6 cut(s) 701, 815, 2725, 3556, 6173, 6429
Cfr10I RCCGGY 3 cut(s) 133, 4498, 4967
Cfr42I CCGCGG 1 cut(s) 3561
Cfr9I CCCGGG 1 cut(s) 6337
ClaI ATCGAT 1 cut(s) 5833
CseI GACGC 1 cut(s) 3409
CspAI ACCGGT 1 cut(s) 4967
CspCI CAANNNNNGTGG 4 cut(s) 1764, 1799, 2086, 2121
DinI GGCGCC 1 cut(s) 814
DraI TTTAAA 3 cut(s) 3771, 4050, 4900
DraIII CACNNNGTG 1 cut(s) 3097
EaeI YGGCCR 1 cut(s) 519
Eco24I GRGCYC 3 cut(s) 548, 3864, 5337
Eco31I GGTCTC 2 cut(s) 124, 1094
Eco32I GATATC 3 cut(s) 1239, 2706, 6285
Eco47I GGWCC 3 cut(s) 1772, 1894, 3409
Eco47III AGCGCT 2 cut(s) 700, 6172
Eco81I CCTNAGG 3 cut(s) 4839, 5178, 5865
Eco88I CYCGRG 5 cut(s) 323, 580, 3981, 4222, 6337
EcoNI CCTNNNNNAGG 3 cut(s) 521, 2285, 3031
EcoO109I RGGNCCY 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 2017
EcoRII CCWGG 8 cut(s) 516, 547, 1069, 1270, 2007, 2160, 2687, 4891
EcoRV GATATC 3 cut(s) 1239, 2706, 6285
EcoT22I ATGCAT 2 cut(s) 1954, 2983
EcoT38I GRGCYC 3 cut(s) 548, 3864, 5337
EgeI GGCGCC 1 cut(s) 814
EheI GGCGCC 1 cut(s) 814
Esp3I CGTCTC 1 cut(s) 4918
FalI AAGNNNNNCTT 2 cut(s) 4142, 4174
FaqI GGGAC 7 cut(s) 423, 1187, 3044, 3502, 3948, 5495, 6341
FauI CCCGC 1 cut(s) 3565
FauNDI CATATG 5 cut(s) 1470, 4616, 4627, 5427, 6355
FbaI TGATCA 2 cut(s) 1879, 2497
FblI GTMKAC 3 cut(s) 2416, 5563, 6015
FriOI GRGCYC 3 cut(s) 548, 3864, 5337
GlaI GCGC 6 cut(s) 700, 814, 2724, 3555, 6172, 6428
GsaI CCCAGC 3 cut(s) 1911, 3857, 3861
GsuI CTGGAG 4 cut(s) 1293, 3109, 4743, 5771
HaeII RGCGCY 4 cut(s) 702, 816, 6174, 6430
HapII CCGG 9 cut(s) 134, 764, 1681, 3615, 4499, 4968, 5014, 6024, 6338
HgaI GACGC 1 cut(s) 3409
HhaI GCGC 6 cut(s) 701, 815, 2725, 3556, 6173, 6429
Hin1I GRCGYC 1 cut(s) 813
Hin6I GCGC 6 cut(s) 699, 813, 2723, 3554, 6171, 6427
HinP1I GCGC 6 cut(s) 699, 813, 2723, 3554, 6171, 6427
HincII GTYRAC 8 cut(s) 1066, 1506, 1721, 1837, 2941, 3586, 5473, 5731
HindII GTYRAC 8 cut(s) 1066, 1506, 1721, 1837, 2941, 3586, 5473, 5731
HindIII AAGCTT 3 cut(s) 3181, 4474, 6155
HpaI GTTAAC 4 cut(s) 1066, 1837, 2941, 3586
HpaII CCGG 9 cut(s) 134, 764, 1681, 3615, 4499, 4968, 5014, 6024, 6338
HphI GGTGA 8 cut(s) 855, 1260, 1535, 2369, 3021, 4469, 4982, 5591
Hpy99I CGWCG 1 cut(s) 58
HpyCH4IV ACGT 3 cut(s) 3396, 5803, 6112
HpySE526I ACGT 3 cut(s) 3396, 5803, 6112
Hsp92I GRCGYC 1 cut(s) 813
HspAI GCGC 6 cut(s) 699, 813, 2723, 3554, 6171, 6427
KasI GGCGCC 1 cut(s) 812
KpnI GGTACC 1 cut(s) 306
Ksp22I TGATCA 2 cut(s) 1879, 2497
KspAI GTTAAC 4 cut(s) 1066, 1837, 2941, 3586
KspI CCGCGG 1 cut(s) 3561
LguI GCTCTTC 1 cut(s) 2776
MaeII ACGT 3 cut(s) 3396, 5803, 6112
MaeIII GTNAC 6 cut(s) 536, 2890, 2951, 3089, 3397, 5786
MbiI CCGCTC 1 cut(s) 1780
MfeI CAATTG 1 cut(s) 5286
MflI RGATCY 8 cut(s) 157, 1149, 1568, 1684, 2534, 2605, 4888, 5852
MlsI TGGCCA 1 cut(s) 521
MluI ACGCGT 1 cut(s) 3401
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 813
MlyI GAGTC 6 cut(s) 5051, 5257, 5287, 5440, 5732, 5951
MmeI TCCRAC 5 cut(s) 386, 1187, 4737, 5186, 6073
Mox20I TGGCCA 1 cut(s) 521
Mph1103I ATGCAT 2 cut(s) 1954, 2983
MroXI GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5683
MscI TGGCCA 1 cut(s) 521
MslI CAYNNNNRTG 4 cut(s) 1085, 2658, 5387, 6378
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 6 cut(s) 1766, 2391, 2407, 3560, 3857, 4831
MspI CCGG 9 cut(s) 134, 764, 1681, 3615, 4499, 4968, 5014, 6024, 6338
MunI CAATTG 1 cut(s) 5286
Mva1269I GAATGC 5 cut(s) 94, 1045, 1972, 3958, 5066
MvaI CCWGG 8 cut(s) 518, 549, 1071, 1272, 2009, 2162, 2689, 4893
MvnI CGCG 2 cut(s) 3403, 3560
NarI GGCGCC 1 cut(s) 813
NciI CCSGG 4 cut(s) 1682, 3616, 6338, 6339
NcoI CCATGG 3 cut(s) 1939, 5388, 5603
NdeI CATATG 5 cut(s) 1470, 4616, 4627, 5427, 6355
NmeAIII GCCGAG 1 cut(s) 3739
NmuCI GTSAC 4 cut(s) 536, 2951, 3089, 3397
NsiI ATGCAT 2 cut(s) 1954, 2983
NspI RCATGY 7 cut(s) 209, 1024, 2212, 2723, 4552, 6035, 6222
PaeI GCATGC 2 cut(s) 2723, 4552
PaeR7I CTCGAG 2 cut(s) 580, 3981
PagI TCATGA 1 cut(s) 3871
PaqCI CACCTGC 1 cut(s) 5540
PasI CCCWGGG 1 cut(s) 1070
PciI ACATGT 2 cut(s) 205, 2208
PciSI GCTCTTC 1 cut(s) 2776
PctI GAATGC 5 cut(s) 94, 1045, 1972, 3958, 5066
PdmI GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5683
PflMI CCANNNNNTGG 2 cut(s) 1345, 3038
PfoI TCCNGGA 1 cut(s) 1680
PinAI ACCGGT 1 cut(s) 4967
Ple19I CGATCG 1 cut(s) 5837
PleI GAGTC 6 cut(s) 5051, 5257, 5286, 5440, 5732, 5951
PluTI GGCGCC 1 cut(s) 816
PpsI GAGTC 6 cut(s) 5051, 5257, 5286, 5440, 5732, 5951
PscI ACATGT 2 cut(s) 205, 2208
PshAI GACNNNNGTC 2 cut(s) 435, 4489
Psp6I CCWGG 8 cut(s) 516, 547, 1069, 1270, 2007, 2160, 2687, 4891
PspFI CCCAGC 3 cut(s) 1907, 3853, 3857
PspGI CCWGG 8 cut(s) 516, 547, 1069, 1270, 2007, 2160, 2687, 4891
PspOMI GGGCCC 2 cut(s) 544, 5333
PspXI VCTCGAGB 1 cut(s) 580
PsrI GAACNNNNNNTAC 2 cut(s) 5487, 5519
PstI CTGCAG 6 cut(s) 507, 712, 826, 1159, 2869, 5521
PstNI CAGNNNCTG 6 cut(s) 830, 1199, 2407, 2810, 3147, 5942
PsuI RGATCY 8 cut(s) 157, 1149, 1568, 1684, 2534, 2605, 4888, 5852
PvuI CGATCG 1 cut(s) 5837
PvuII CAGCTG 5 cut(s) 1766, 2391, 2407, 3857, 4831
RseI CAYNNNNRTG 4 cut(s) 1085, 2658, 5387, 6378
SacII CCGCGG 1 cut(s) 3561
SapI GCTCTTC 1 cut(s) 2776
SchI GAGTC 6 cut(s) 5051, 5257, 5287, 5440, 5732, 5951
SfoI GGCGCC 1 cut(s) 814
Sfr274I CTCGAG 2 cut(s) 580, 3981
Sfr303I CCGCGG 1 cut(s) 3561
SgrBI CCGCGG 1 cut(s) 3561
SinI GGWCC 3 cut(s) 1772, 1894, 3409
SlaI CTCGAG 2 cut(s) 580, 3981
SmaI CCCGGG 1 cut(s) 6339
SmiI ATTTAAAT 1 cut(s) 3771
SmiMI CAYNNNNRTG 4 cut(s) 1085, 2658, 5387, 6378
SmlI CTYRAG 5 cut(s) 580, 1433, 3981, 5028, 5265
SmoI CTYRAG 5 cut(s) 580, 1433, 3981, 5028, 5265
SpeI ACTAGT 1 cut(s) 953
SphI GCATGC 2 cut(s) 2723, 4552
SsiI CCGC 9 cut(s) 110, 1018, 1778, 2176, 2717, 3558, 3560, 4446, 5275
SspDI GGCGCC 1 cut(s) 812
SspI AATATT 4 cut(s) 625, 739, 3916, 4414
SwaI ATTTAAAT 1 cut(s) 3771
TaiI ACGT 3 cut(s) 3399, 5806, 6115
TaqII GACCGA 1 cut(s) 3462
TatI WGTACW 1 cut(s) 6162
TseFI GTSAC 4 cut(s) 536, 2951, 3089, 3397
Tsp45I GTSAC 4 cut(s) 536, 2951, 3089, 3397
TspGWI ACGGA 1 cut(s) 4900
TspMI CCCGGG 1 cut(s) 6337
Van91I CCANNNNNTGG 2 cut(s) 1345, 3038
VpaK11BI GGWCC 3 cut(s) 1772, 1894, 3409
XagI CCTNNNNNAGG 3 cut(s) 521, 2285, 3031
XbaI TCTAGA 3 cut(s) 614, 683, 2794
XceI RCATGY 7 cut(s) 209, 1024, 2212, 2723, 4552, 6035, 6222
XcmI CCANNNNNNNNNTGG 3 cut(s) 1937, 2005, 3205
XhoI CTCGAG 2 cut(s) 580, 3981
XmaI CCCGGG 1 cut(s) 6337
XmiI GTMKAC 3 cut(s) 2416, 5563, 6015
XmnI GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5683
Zsp2I ATGCAT 2 cut(s) 1954, 2983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.