RLG00000011614

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004222
Physical Location & Seq
Reverse (-)
11015642 .. 11024469
8828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011614

Sequence Viewer

Length: 5037 bp
ATGGAGAACTGGTGGATGAACAAATGTAATTCGACATTGCCTTCAATAGCTTCGTCGTCTTCTCAGGAGCTTCGGAATCAGATGGAGAATGCAGGCTATTTTCCTTGTCCGCATGGCTCACAAGATTTGAGACCGGCGATGCTTGGTAGGTTGCAGGATCCTCTGCTTTCCAGCATCCAGAGTTCAGGTTCCCACAGATCAGAACATGTTAATTTGGGAAATTCTTTTCTGTCTCTCCTATCTGGGTCGCCATCACTATTGCAGCGTGATTTTCAAGATTTTTCAAATTCCCAACCTATTGGTACCTCTGGTAAAATTCTACCCGAGGGTAGTAACTCCATTCTAAACGGTACTCAAAATGCCATCCCATTGTCTACCACCGGGCTACCATCAGAAAAGTTGAGTTGGAAAAATCTGCAAAGTGGAGCAGACTTCTGTCCCAATGGATCATCAAAGGTAGTGCCAAGTTCCATTTGTGCCAGCAATTCCGTATTGCATGATCTGCAGAGTTCAGACCTGGCCAAGGTAGTCATCTGTCACATGGGCCCTGGTAATGAGAAACTAAAGACTTATGCCTCGAGTGGGGAATGGCACGGTGCTGCTCCTGCATCTAGAGGAAATATTCAAATTTCCGAAAAAATGCCACTGGAAGCAAACAGCTTCGTATCTAATCAGGCATCTAGAGTGTGTCATAGCGCTAGTCCTGCAGATTCTTGGAAGGCATGTAGAGAAAATATTCATACTTCACAAAAAATACCACTGGAAGCAAACTCTTTTATTTCTTATCAGGCATCTAGTTTATGGCATGGCGCCAGTCCTGCAGACACTGGGAAGGCTTGCAGAGCTAACATTGAAACTTCACCAAAAATGCCAGTGGAAGCATACTCTTTTATATCTAACCAGCCACCTAGTTTTATGAATGGTTGCCCTCGTGTTTTCTGCTCGACTACTGGTGGCTATCTACTTCTTAGCAATACAGGACTTCTTGGTATTGTTTGCTCTTGCCATTCTTTCCGCATGTCTGCGTTTAAGTTTTGTGAGCATTCAGGATTATATGGTGTTAACCCAGGGGATGCCATTCACATGGACAGTGGAGAGACCATTGCTCAATGGTGCAAGCTCTATCTCCCGAAGTTTGGGATTAGGATCCCTGCAGATAAGAATGAATGGGACTGGCCTGAAGAATTATCAGCAACTGCCAGTTTGATGAAATCTAGTGTGCCTATGCCAAAGATATCCAATAGCTCGTCTGATTTGGTCTTTTCACCTGGAGGTTCAGTAAGTTCTAAACAGTCTTTTGATGGTGTTTCGCTATCGAAGAATTTTATTCCAAGGCAGAGTTTGGTTATTAGTGCTGTATCAAATAAACCCGAAAGGGCATCAGATAGACCCGAAAGGAACATTCAGGGTACTAACAACCTGTTTCTCAAGGCTTTGACTGGTACTTCACAGAGCAATTTGCATATGGCAGATAACCTGTTAATGGAGCGTGCCATGTCAACGTCAAAGTTAGTTGGTAATGGAGCACAAGATGGTTGTGAGTCTATTTCTGCTTATAGTGGATCTATGCAAAATAGAACCTCTTCCATTGCCCACCCCACTTTACAGGAACGAAGAATCATTGGTAAAGAATCAGACTTTTGCAGAATTGAAAACGCAAAGGATGGTGCCTTCCGGGATGCGGCGATTTCAAATATAGAGCTGAGGCTTGGTCAACCTTACCAGTTGACTCAAACTTCAGGAACTCCTGATCTGTCAGCTGTAGGACCACCGCTCTTGGGCACTGTTGTAAATCCAATGAAATCTCTCTTCCCTCAACAGATGATTGCTAACAGAGCGAATTGCAGGGAAGAGGTGGAATTGGGGCAATGTGATCATTTTTCTGTGGACCCGTCCAATCCCAGCAGAAATAGAGATCGGAACCAGTTAAACCATGGAATCAATGCATTTGTAATCAGGAATGCCATAGATGATGAAAGGGTAGAGAAATCCAGTAGCAACCTGGGCCAGAATTCTGTGATTTCAGTTCTTACCAATCTCAAATCTCCATCTAACGAATATACACAATCAAAAGCAAATAACTATATGTTCGATGACAGTGGGAATACTATGAGAAATACACTACATTCTGAACCTCTACCTGTCAAGTATGACCTGGCTACTGTCCTGCGGAGTGCAGGTAATAGTGAAAGGCAACAGGACATGTCGCACTTTGGCTCCTATAAACTAAAAGACAATGATAAAGGGCTGAGTTTTGCTGCTGATGGCTCTTACCTTGCAAAGGATTTGGGGTATAGAATACGTAAGGAAATGGAAGTTTCTAGCTCTTCCAATAGGTTGAGTGGTAATGGTGAACCTAATTTTTTAACAGCATATAGAAACAGCTGCTACTCACAGCAGTTGTCTGGTATTCCACTGGGTACACCTGATTCCAAAATAAGTTCCAACTATCCTGAGAAGGTTATTTCTTTTGCAAATAGTGGGCAAGTTGATCATGTCTACTTTCGACCCTTGGCTTCATCTATGGGATCTGGGATGAAAGTTCCTACTCAGGCAGTCTCAAAAGGTGTTCCTGTGAGTGCATCAACCTCTTTAGCAGATCTGATACCACCTTTCTGTAGGGAAGAGTTCATTGGAGTTCACACTCATTTCCGTGATGATAAATTGCAAGTGTCTGCACCAAGGCAAATGCAAGAGATATCGAAGCAACAGCATGCGCTGCCTTCCCTTTCTAAGAACCAAGGGGAAGGAAGATTTGGTTGCTCTTCCTATATGCAGCATCCTCTTCTAGAAACTTCAGCATCTGGGAAGCAAAGCCACAAACATAGTCTTAGCAGTAAATATGATGTTTCTGAAGCTGCAGTTAATCCACGCCAATCTGGTGTTACCTGTAGGATTGGAACTGATGAAGGTTTCGTTTCCATGACAGGTGTTAACTGCTGTTGTCACTTCTCACGATATAAACAAGGAAATGCATTAGATTCTAAAGAAGTTGATCTGAAACATCAAATTGGGCAGCCCTCACCAAGGATTGGAAAGAAGTCCAAGAATGTCCCTGAGCCTAGTGAGCAAGAAAGGTGCTGTCACAAAGTGCCCTGTGGTAATTTTCATGGCAGCTCCAGTTGTGCAGCCTACAGAAACTGTTTAGAAAGGAATTTTGAATCAAGAATTGGAAGCTTACCTACTGTGTCCAAGGGTCAAATGGGAACAGTCAATAGTGAAGTCTCTATGATATTTTCTCCACAATTTGCTAACAGCCAAATTATTCCAAAGGATAAACCTGTTTCCTTAGATCATAAGAGAAAGTTGAGTGGAGAAGTACCCAATAACAATGCTTATCATACTTCTCAGTGGAGAGATGTGCCAAGTAAGGTCAAAGGGGTTTCTGACGTGACGCGTGTGGACCGTTTAGCTAATCTGTTTGATGCAACAAGAGAAGACCGAGAGAAACTTGGAGATTCTTGCGTTAAATGCTTCAATGGGACTGTGCAGATGGCGAACTCCATGAAAGAGCATGAAGTATCTGATATATCTTCTGGATGCTCTGCACCCGCGGTTAGTCAGCCATCAGTAGAGGTTAACAATATGGGTTCTTCAACTAATGATGCCGGGGATAATGGATGTGGAAGCAATTTTGTTGTTGATGAAGGATCAGGCATTGACAAAGCATGGTCATCGGATGATGCACTTGAAAGTGAAAAAGGTGCCGAGTTCCTTGCCTCTACTGGTTCCAGCCTGAGAAAAGTCGGGCCTCCCAAGAATTTAAATTGTCAATCTTCATCTTACCTTCTTGATGACCTTAAACTCCTAAACTCTTTAACATGGCAGAAAGGTCGAGATCATATCCCAGCCGGGCTCGCCCTTCATGATAAAGACAAACATCTTCATAACTTGGAACAAGGCTTGAATATTAAGAAGAGAAAGAGAGAACTGGGATTGAAATTGAATGCTTCATGTCCCACTTCAGATTCTTCTCGAGTAAGACAAGAGAATCCCAAAAGTAATGGCACTTCTCAGTTTATTTCCCGACCATCGAAGAGTTTAAAGATGCTTTTAACATCAAGGAAATCGGAAACTCATGCCATTGGGAACTGCATTACTCAATCTGGTTCTAAACCCAGACTACATATCTCATGTTCAGGAAAGAAGCTCTTGCGTAGAAGTGATTTACACAGACTACATAATGATAAAGACAGTGAAGTGAATAGTGTTTTCCCGAGAGAACTAAATGGTGGTACTAACAATTATGAAATTGCTGAAGTTTGTGGTGGGGAGACAGGTAAAAGAGATTGCAGTACCAATGCTTTTAGTCAGTTCCAGATAGAAGAATCTAGTCGAGAAGATGCTAAAAAAACAAAGTGCAATTCTGTAGATGGTTTCAAATCAACTTCTAGTCAGCAAGTGAATATTGGTCATAGGAAGGCAAGGCCAATAGTATGCGGAATATATGGTGAATTAACTGATGGAAGCTTGACTGGACAAATGTCAAAACCGGCAAAACTTGTTCCTCTCAGCAGGGTTCTTAATTCTTCCCGAAAATGCATGCTCCCCAAACATTGTAACTCTAAATCAACTTCCATGAGAAAGAGGAACCTTGGTGGGGATGTCATATGCAATACATATGACTTGAAGACTGAAAAATACAACAAATGTTGTAATGCTACAGTTAAAATCAATGATACTTCCATGAGAAAAAGGAAGAAAGAACGCTCCACTGGAGACAGGGAATTTCATAAAGAGCTGTTCTCGTTGGAGAAACAAGGAGATGTTCAAAGTGAAAAGGATCATCGTAAGCTAGACGGTATTACCCATACTCAATCGCAGCCGAAGCCTAAGGAAATTCGGAAACGCAGCATATATGAATTGACAGAAAAAGGGGAGGATCCCGGCTTTAAAAGTTCTTCCGTCTCAAAGATTTCAATTTGCCTGCCAGCAATGAAAGACTGCAAACTTCTAAATACCGGTGAAGTTAGTGGATTATGCCAACATAGTGCTAAAAAGTATGTGTTCTTTGTGGTTATGGTGGTGGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

1679

Amino Acids

183.27

Weight (kDa)

8.86

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 327 - 373 1.2e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2168
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 5 cut(s) 302, 809, 1667, 3704, 5029
AccB7I CCANNNNNTGG 1 cut(s) 3032
AccBSI CCGCTC 1 cut(s) 1774
AccI GTMKAC 2 cut(s) 374, 2499
AccII CGCG 2 cut(s) 3397, 3554
AciI CCGC 8 cut(s) 110, 1015, 1682, 1772, 2170, 3552, 3554, 4440
AcoI YGGCCR 1 cut(s) 519
AcuI CTGAAG 6 cut(s) 1200, 1722, 2781, 2874, 3948, 4278
AcyI GRCGYC 1 cut(s) 810
AdeI CACNNNGTG 1 cut(s) 3091
AfaI GTAC 8 cut(s) 304, 352, 1411, 1444, 2422, 3321, 4237, 4297
AfeI AGCGCT 1 cut(s) 697
AflIII ACRYGT 3 cut(s) 205, 2202, 3395
AgeI ACCGGT 1 cut(s) 4961
AjiI CACGTC 1 cut(s) 3391
AjnI CCWGG 6 cut(s) 516, 547, 1066, 1267, 2001, 2154
AjuI GAANNNNNNNTTGG 6 cut(s) 2616, 2648, 2739, 2771, 3153, 3185
Alw21I GWGCWC 1 cut(s) 1528
Alw26I GTCTC 8 cut(s) 124, 237, 1091, 2563, 3229, 4268, 4713, 4912
AlwNI CAGNNNCTG 4 cut(s) 827, 1196, 2804, 3141
Ama87I CYCGRG 4 cut(s) 323, 577, 3975, 4216
Aor51HI AGCGCT 1 cut(s) 697
AoxI GGCC 6 cut(s) 519, 544, 1175, 2005, 3749, 4427
ApaI GGGCCC 1 cut(s) 548
AsiGI ACCGGT 1 cut(s) 4961
Asp700I GAANNNNTTC 2 cut(s) 735, 1582
Asp718I GGTACC 1 cut(s) 302
AspLEI GCGC 3 cut(s) 698, 812, 2719
AspS9I GGNCC 7 cut(s) 544, 545, 1766, 1888, 2005, 3403, 3749
AsuC2I CCSGG 5 cut(s) 382, 1676, 3610, 3853, 4887
AsuHPI GGTGA 6 cut(s) 852, 1257, 2363, 3015, 4463, 4976
AvaI CYCGRG 4 cut(s) 323, 577, 3975, 4216
AvaII GGWCC 3 cut(s) 1766, 1888, 3403
AxyI CCTNAGG 1 cut(s) 4833
BaeGI GKGCMC 3 cut(s) 548, 1784, 3096
BalI TGGCCA 1 cut(s) 521
BamHI GGATCC 3 cut(s) 157, 1146, 4882
BanI GGYRCC 5 cut(s) 302, 809, 1667, 3704, 5029
BanII GRGCYC 2 cut(s) 548, 3858
BarI GAAGNNNNNNTAC 4 cut(s) 3166, 3198, 3994, 4026
BauI CACGAG 1 cut(s) 930
BbsI GAAGAC 3 cut(s) 51, 3444, 4637
Bbv12I GWGCWC 1 cut(s) 1528
BbvCI CCTCAGC 1 cut(s) 1703
BcgI CGANNNNNNTGC 6 cut(s) 3657, 3691, 3698, 3732, 3815, 3849
BciT130I CCWGG 6 cut(s) 518, 549, 1068, 1269, 2003, 2156
BclI TGATCA 2 cut(s) 1873, 2491
BcnI CCSGG 5 cut(s) 382, 1676, 3610, 3853, 4887
BcoDI GTCTC 8 cut(s) 124, 237, 1091, 2563, 3229, 4268, 4713, 4912
BfoI RGCGCY 2 cut(s) 699, 813
BfuAI ACCTGC 1 cut(s) 2168
BglII AGATCT 1 cut(s) 2599
Bme18I GGWCC 3 cut(s) 1766, 1888, 3403
BmeT110I CYCGRG 4 cut(s) 323, 577, 3975, 4216
BmgBI CACGTC 1 cut(s) 3391
BmgT120I GGNCC 7 cut(s) 544, 545, 1766, 1888, 2005, 3403, 3749
BmrI ACTGGG 3 cut(s) 837, 2426, 3941
BmuI ACTGGG 3 cut(s) 837, 2426, 3941
BoxI GACNNNNGTC 2 cut(s) 435, 4483
BpiI GAAGAC 3 cut(s) 51, 3444, 4637
BplI GAGNNNNNCTC 2 cut(s) 4730, 4762
BpmI CTGGAG 3 cut(s) 1290, 3103, 4737
Bpu10I CCTNAGC 2 cut(s) 1703, 3057
BpuEI CTTGAG 1 cut(s) 1412
BpuMI CCSGG 5 cut(s) 382, 1676, 3610, 3853, 4887
BsaAI YACGTR 1 cut(s) 2303
BsaBI GATNNNNATC 1 cut(s) 1145
BsaHI GRCGYC 1 cut(s) 810
BsaI GGTCTC 2 cut(s) 124, 1091
BsaWI WCCGGW 1 cut(s) 4961
BsaXI ACNNNNNCTCC 7 cut(s) 26, 1263, 1293, 2164, 2194, 2201, 2231
Bse118I RCCGGY 3 cut(s) 133, 4492, 4961
Bse21I CCTNAGG 1 cut(s) 4833
Bse3DI GCAATG 5 cut(s) 35, 1101, 1587, 1874, 4941
Bse8I GATNNNNATC 1 cut(s) 1145
BseBI CCWGG 6 cut(s) 518, 549, 1068, 1269, 2003, 2156
BseJI GATNNNNATC 1 cut(s) 1145
BseMI GCAATG 5 cut(s) 35, 1101, 1587, 1874, 4941
BseSI GKGCMC 3 cut(s) 548, 1784, 3096
BseYI CCCAGC 2 cut(s) 1901, 3847
BsgI GTGCAG 5 cut(s) 2196, 2661, 3147, 3509, 3531
Bsh1236I CGCG 2 cut(s) 3397, 3554
BshFI GGCC 6 cut(s) 521, 546, 1177, 2007, 3751, 4429
BshNI GGYRCC 5 cut(s) 302, 809, 1667, 3704, 5029
BshTI ACCGGT 1 cut(s) 4961
BsiHKAI GWGCWC 1 cut(s) 1528
BsiHKCI CYCGRG 4 cut(s) 323, 577, 3975, 4216
BsiSI CCGG 8 cut(s) 134, 381, 1675, 3609, 3852, 4493, 4887, 4962
BslFI GGGAC 5 cut(s) 423, 1184, 3038, 3496, 3942
BsmAI GTCTC 8 cut(s) 124, 237, 1091, 2563, 3229, 4268, 4713, 4912
BsmBI CGTCTC 1 cut(s) 4912
BsmFI GGGAC 5 cut(s) 423, 1184, 3038, 3496, 3942
BsmI GAATGC 4 cut(s) 94, 1042, 1966, 3952
BsnI GGCC 6 cut(s) 521, 546, 1177, 2007, 3751, 4429
Bso31I GGTCTC 2 cut(s) 124, 1091
BsoBI CYCGRG 4 cut(s) 323, 577, 3975, 4216
Bsp120I GGGCCC 1 cut(s) 544
Bsp1286I GDGCHC 5 cut(s) 548, 1528, 1784, 3096, 3858
Bsp19I CCATGG 1 cut(s) 1933
BspACI CCGC 8 cut(s) 110, 1015, 1682, 1772, 2170, 3552, 3554, 4440
BspANI GGCC 6 cut(s) 521, 546, 1177, 2007, 3751, 4429
BspFNI CGCG 2 cut(s) 3397, 3554
BspHI TCATGA 1 cut(s) 3865
BspMAI CTGCAG 5 cut(s) 507, 709, 823, 1156, 2863
BspMI ACCTGC 1 cut(s) 2168
BspQI GCTCTTC 2 cut(s) 2332, 2770
BspT107I GGYRCC 5 cut(s) 302, 809, 1667, 3704, 5029
BspTNI GGTCTC 2 cut(s) 124, 1091
BsrBI CCGCTC 1 cut(s) 1774
BsrDI GCAATG 5 cut(s) 35, 1101, 1587, 1874, 4941
BsrFI RCCGGY 3 cut(s) 133, 4492, 4961
BssAI RCCGGY 3 cut(s) 133, 4492, 4961
BssNI GRCGYC 1 cut(s) 810
BssSI CACGAG 1 cut(s) 930
BssT1I CCWWGG 9 cut(s) 522, 1331, 1933, 2511, 2681, 2740, 3026, 3192, 4594
Bst2BI CACGAG 1 cut(s) 930
Bst2UI CCWGG 6 cut(s) 518, 549, 1068, 1269, 2003, 2156
Bst6I CTCTTC 9 cut(s) 1588, 1814, 1845, 2332, 2619, 2770, 2790, 3911, 4031
BstACI GRCGYC 1 cut(s) 810
BstAPI GCANNNNNTGC 2 cut(s) 502, 2719
BstBAI YACGTR 1 cut(s) 2303
BstDSI CCRYGG 2 cut(s) 1933, 3552
BstENI CCTNNNNNAGG 3 cut(s) 521, 2279, 3025
BstFNI CGCG 2 cut(s) 3397, 3554
BstH2I RGCGCY 2 cut(s) 699, 813
BstHHI GCGC 3 cut(s) 698, 812, 2719
BstMAI GTCTC 8 cut(s) 124, 237, 1091, 2563, 3229, 4268, 4713, 4912
BstNI CCWGG 6 cut(s) 518, 549, 1068, 1269, 2003, 2156
BstNSI RCATGY 6 cut(s) 209, 726, 1021, 2206, 2717, 4546
BstPAI GACNNNNGTC 2 cut(s) 435, 4483
BstSLI GKGCMC 3 cut(s) 548, 1784, 3096
BstSNI TACGTA 1 cut(s) 2303
BstUI CGCG 2 cut(s) 3397, 3554
BstV2I GAAGAC 3 cut(s) 51, 3444, 4637
BstX2I RGATCY 6 cut(s) 157, 1146, 1562, 2528, 2599, 4882
BstXI CCANNNNNNTGG 2 cut(s) 299, 1084
BstYI RGATCY 6 cut(s) 157, 1146, 1562, 2528, 2599, 4882
Bsu36I CCTNAGG 1 cut(s) 4833
BsuRI GGCC 6 cut(s) 521, 546, 1177, 2007, 3751, 4429
BtgI CCRYGG 2 cut(s) 1933, 3552
BtgZI GCGATG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 3391
BveI ACCTGC 1 cut(s) 2168
CaiI CAGNNNCTG 4 cut(s) 827, 1196, 2804, 3141
CciI TCATGA 1 cut(s) 3865
CfoI GCGC 3 cut(s) 698, 812, 2719
Cfr10I RCCGGY 3 cut(s) 133, 4492, 4961
Cfr13I GGNCC 7 cut(s) 544, 545, 1766, 1888, 2005, 3403, 3749
Cfr42I CCGCGG 1 cut(s) 3555
CseI GACGC 1 cut(s) 3403
Csp6I GTAC 8 cut(s) 303, 351, 1410, 1443, 2421, 3320, 4236, 4296
CspAI ACCGGT 1 cut(s) 4961
CspCI CAANNNNNGTGG 2 cut(s) 1758, 1793
CviQI GTAC 8 cut(s) 303, 351, 1410, 1443, 2421, 3320, 4236, 4296
DinI GGCGCC 1 cut(s) 811
DraI TTTAAA 3 cut(s) 3765, 4044, 4894
DraIII CACNNNGTG 1 cut(s) 3091
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 9 cut(s) 1588, 1814, 1845, 2332, 2619, 2770, 2790, 3911, 4031
EarI CTCTTC 9 cut(s) 1588, 1814, 1845, 2332, 2619, 2770, 2790, 3911, 4031
Eco105I TACGTA 1 cut(s) 2303
Eco130I CCWWGG 9 cut(s) 522, 1331, 1933, 2511, 2681, 2740, 3026, 3192, 4594
Eco24I GRGCYC 2 cut(s) 548, 3858
Eco31I GGTCTC 2 cut(s) 124, 1091
Eco32I GATATC 2 cut(s) 1236, 2700
Eco47I GGWCC 3 cut(s) 1766, 1888, 3403
Eco47III AGCGCT 1 cut(s) 697
Eco57I CTGAAG 6 cut(s) 1200, 1722, 2781, 2874, 3948, 4278
Eco81I CCTNAGG 1 cut(s) 4833
Eco88I CYCGRG 4 cut(s) 323, 577, 3975, 4216
EcoNI CCTNNNNNAGG 3 cut(s) 521, 2279, 3025
EcoO109I RGGNCCY 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 2011
EcoRII CCWGG 6 cut(s) 516, 547, 1066, 1267, 2001, 2154
EcoRV GATATC 2 cut(s) 1236, 2700
EcoT14I CCWWGG 9 cut(s) 522, 1331, 1933, 2511, 2681, 2740, 3026, 3192, 4594
EcoT22I ATGCAT 3 cut(s) 1948, 2977, 4544
EcoT38I GRGCYC 2 cut(s) 548, 3858
EgeI GGCGCC 1 cut(s) 811
EheI GGCGCC 1 cut(s) 811
ErhI CCWWGG 9 cut(s) 522, 1331, 1933, 2511, 2681, 2740, 3026, 3192, 4594
Esp3I CGTCTC 1 cut(s) 4912
FalI AAGNNNNNCTT 2 cut(s) 4136, 4168
FaqI GGGAC 5 cut(s) 423, 1184, 3038, 3496, 3942
FauI CCCGC 1 cut(s) 3559
FauNDI CATATG 3 cut(s) 1464, 4610, 4621
FbaI TGATCA 2 cut(s) 1873, 2491
FblI GTMKAC 2 cut(s) 374, 2499
FriOI GRGCYC 2 cut(s) 548, 3858
GlaI GCGC 3 cut(s) 697, 811, 2718
GsaI CCCAGC 2 cut(s) 1905, 3851
GsuI CTGGAG 3 cut(s) 1290, 3103, 4737
HaeII RGCGCY 2 cut(s) 699, 813
HaeIII GGCC 6 cut(s) 521, 546, 1177, 2007, 3751, 4429
HapII CCGG 8 cut(s) 134, 381, 1675, 3609, 3852, 4493, 4887, 4962
HgaI GACGC 1 cut(s) 3403
HhaI GCGC 3 cut(s) 698, 812, 2719
Hin1I GRCGYC 1 cut(s) 810
Hin6I GCGC 3 cut(s) 696, 810, 2717
HinP1I GCGC 3 cut(s) 696, 810, 2717
HincII GTYRAC 6 cut(s) 1063, 1500, 1715, 1728, 2935, 3580
HindII GTYRAC 6 cut(s) 1063, 1500, 1715, 1728, 2935, 3580
HindIII AAGCTT 2 cut(s) 3175, 4468
HpaI GTTAAC 3 cut(s) 1063, 2935, 3580
HpaII CCGG 8 cut(s) 134, 381, 1675, 3609, 3852, 4493, 4887, 4962
HphI GGTGA 6 cut(s) 852, 1257, 2363, 3015, 4463, 4976
Hpy99I CGWCG 1 cut(s) 58
HpyCH4IV ACGT 3 cut(s) 1502, 2302, 3390
HpySE526I ACGT 3 cut(s) 1502, 2302, 3390
Hsp92I GRCGYC 1 cut(s) 810
HspAI GCGC 3 cut(s) 696, 810, 2717
KasI GGCGCC 1 cut(s) 809
KpnI GGTACC 1 cut(s) 306
Ksp22I TGATCA 2 cut(s) 1873, 2491
KspAI GTTAAC 3 cut(s) 1063, 2935, 3580
KspI CCGCGG 1 cut(s) 3555
LguI GCTCTTC 2 cut(s) 2332, 2770
LmnI GCTCC 9 cut(s) 67, 425, 607, 1486, 1523, 2222, 3122, 4551, 4715
MaeII ACGT 3 cut(s) 1502, 2302, 3390
MaeIII GTNAC 7 cut(s) 332, 536, 2884, 2945, 3083, 3391, 4559
MbiI CCGCTC 1 cut(s) 1774
MflI RGATCY 6 cut(s) 157, 1146, 1562, 2528, 2599, 4882
MhlI GDGCHC 5 cut(s) 548, 1528, 1784, 3096, 3858
MlsI TGGCCA 1 cut(s) 521
MluI ACGCGT 1 cut(s) 3395
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 810
MlyI GAGTC 2 cut(s) 1550, 1723
MmeI TCCRAC 3 cut(s) 386, 2469, 4731
Mox20I TGGCCA 1 cut(s) 521
Mph1103I ATGCAT 3 cut(s) 1948, 2977, 4544
MroXI GAANNNNTTC 2 cut(s) 735, 1582
MscI TGGCCA 1 cut(s) 521
MslI CAYNNNNRTG 2 cut(s) 1082, 2652
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 3 cut(s) 1760, 2385, 3554
MspI CCGG 8 cut(s) 134, 381, 1675, 3609, 3852, 4493, 4887, 4962
Mva1269I GAATGC 4 cut(s) 94, 1042, 1966, 3952
MvaI CCWGG 6 cut(s) 518, 549, 1068, 1269, 2003, 2156
MvnI CGCG 2 cut(s) 3397, 3554
NarI GGCGCC 1 cut(s) 810
NciI CCSGG 5 cut(s) 382, 1676, 3610, 3853, 4887
NcoI CCATGG 1 cut(s) 1933
NdeI CATATG 3 cut(s) 1464, 4610, 4621
NmeAIII GCCGAG 1 cut(s) 3733
NmuCI GTSAC 4 cut(s) 536, 2945, 3083, 3391
NsiI ATGCAT 3 cut(s) 1948, 2977, 4544
NspI RCATGY 6 cut(s) 209, 726, 1021, 2206, 2717, 4546
PaeI GCATGC 2 cut(s) 2717, 4546
PaeR7I CTCGAG 2 cut(s) 577, 3975
PagI TCATGA 1 cut(s) 3865
PasI CCCWGGG 1 cut(s) 1067
PciI ACATGT 2 cut(s) 205, 2202
PciSI GCTCTTC 2 cut(s) 2332, 2770
PctI GAATGC 4 cut(s) 94, 1042, 1966, 3952
PdmI GAANNNNTTC 2 cut(s) 735, 1582
PflMI CCANNNNNTGG 1 cut(s) 3032
PfoI TCCNGGA 1 cut(s) 1674
PinAI ACCGGT 1 cut(s) 4961
PleI GAGTC 2 cut(s) 1549, 1723
PluTI GGCGCC 1 cut(s) 813
PpsI GAGTC 2 cut(s) 1549, 1723
Ppu21I YACGTR 1 cut(s) 2303
PscI ACATGT 2 cut(s) 205, 2202
PshAI GACNNNNGTC 2 cut(s) 435, 4483
Psp6I CCWGG 6 cut(s) 516, 547, 1066, 1267, 2001, 2154
PspFI CCCAGC 2 cut(s) 1901, 3847
PspGI CCWGG 6 cut(s) 516, 547, 1066, 1267, 2001, 2154
PspOMI GGGCCC 1 cut(s) 544
PspPI GGNCC 7 cut(s) 544, 545, 1766, 1888, 2005, 3403, 3749
PspXI VCTCGAGB 1 cut(s) 577
PstI CTGCAG 5 cut(s) 507, 709, 823, 1156, 2863
PstNI CAGNNNCTG 4 cut(s) 827, 1196, 2804, 3141
PsuI RGATCY 6 cut(s) 157, 1146, 1562, 2528, 2599, 4882
PvuII CAGCTG 2 cut(s) 1760, 2385
RsaI GTAC 8 cut(s) 304, 352, 1411, 1444, 2422, 3321, 4237, 4297
RsaNI GTAC 8 cut(s) 303, 351, 1410, 1443, 2421, 3320, 4236, 4296
RseI CAYNNNNRTG 2 cut(s) 1082, 2652
SacII CCGCGG 1 cut(s) 3555
SapI GCTCTTC 2 cut(s) 2332, 2770
Sau96I GGNCC 7 cut(s) 544, 545, 1766, 1888, 2005, 3403, 3749
SchI GAGTC 2 cut(s) 1550, 1723
SduI GDGCHC 5 cut(s) 548, 1528, 1784, 3096, 3858
SfoI GGCGCC 1 cut(s) 811
Sfr274I CTCGAG 2 cut(s) 577, 3975
Sfr303I CCGCGG 1 cut(s) 3555
SgrBI CCGCGG 1 cut(s) 3555
SinI GGWCC 3 cut(s) 1766, 1888, 3403
SlaI CTCGAG 2 cut(s) 577, 3975
SmiI ATTTAAAT 1 cut(s) 3765
SmiMI CAYNNNNRTG 2 cut(s) 1082, 2652
SmlI CTYRAG 3 cut(s) 577, 1427, 3975
SmoI CTYRAG 3 cut(s) 577, 1427, 3975
SnaBI TACGTA 1 cut(s) 2303
SphI GCATGC 2 cut(s) 2717, 4546
SsiI CCGC 8 cut(s) 110, 1015, 1682, 1772, 2170, 3552, 3554, 4440
SspDI GGCGCC 1 cut(s) 809
SspI AATATT 4 cut(s) 622, 736, 3910, 4408
StyI CCWWGG 9 cut(s) 522, 1331, 1933, 2511, 2681, 2740, 3026, 3192, 4594
SwaI ATTTAAAT 1 cut(s) 3765
TaiI ACGT 3 cut(s) 1505, 2305, 3393
TaqII GACCGA 1 cut(s) 3456
TauI GCSGC 1 cut(s) 1685
TseFI GTSAC 4 cut(s) 536, 2945, 3083, 3391
Tsp45I GTSAC 4 cut(s) 536, 2945, 3083, 3391
TspGWI ACGGA 3 cut(s) 478, 2642, 4894
Van91I CCANNNNNTGG 1 cut(s) 3032
VpaK11BI GGWCC 3 cut(s) 1766, 1888, 3403
XagI CCTNNNNNAGG 3 cut(s) 521, 2279, 3025
XbaI TCTAGA 3 cut(s) 611, 680, 2788
XceI RCATGY 6 cut(s) 209, 726, 1021, 2206, 2717, 4546
XcmI CCANNNNNNNNNTGG 3 cut(s) 1931, 1999, 3199
XhoI CTCGAG 2 cut(s) 577, 3975
XmiI GTMKAC 2 cut(s) 374, 2499
XmnI GAANNNNTTC 2 cut(s) 735, 1582
Zsp2I ATGCAT 3 cut(s) 1948, 2977, 4544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.