Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471549.1

Orthogroup ID

OG0004222

Physical Location & Seq

Genomic Coordinates Reverse (-)

80 .. 2004

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471549.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgtgtgtgtgtgtctctttgtcgaggtgttttggttacaagggccgtaaacgtgatggcttcaggcataactattgtgatcgatcgaaaggaagtgatggatcccttgttcctcaggagcagttaaatgcttgggcttatattaatgggcataagtcacgcacacaggagcttcctaaactcgcagtatctgatatagagcacgactctcggaaagaatacacacgctataagcaagcaaagtcttggaagcatcttgtagtatacaagtccggcatacatgcccttggtctttacacatctcggttcatttcccgtgatgaaatggttgttgagtatgttggagagattgtgggccaacgtgttgctgataaaagggaaaatgaatatcaatctggaaaaaagcttcagtacaagagcgcgtgctactttttcaggatagacaaagagcacatcattgatgctacatgcaaaggagggattgctcgatttgttaaccattcctgctcgccaaattgcgttgccaaagtgatatcagtgaggaatgaaaagaaggttgtatttcttgcagagagggacattttcccgggagaagagattacatatgactaccattttaaccatgaggatgaaggtaagaagattccatgttcttgcaactcaaagaattgcaggcgctacttgaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

229

Amino Acids

26.54

Weight (kDa)

9.16

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004222)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350
malus_domestica	MD15G1130200.v1.1
prunus_persica	Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1
pyrus_communis	pycom15g11740
rosa_chinensis	RchiOBHm_Chr1g0356281 RchiOBHm_Chr4g0425611 RchiOBHm_Chr6g0297291
rosa_laevigata	RLG00000011614
rosa_multiflora	Rmu_co8471549.1_g000001 Rmu_sc0004535.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306840 Rroxscaffold_7G00170680
rosa_rugosa	Rorug06G0270300 Rorug06G0270400 Rorug06G0270500
rosa_samantha	Rh6AG381800 Rh6BG389800 Rh6CG395000 Rh6DG381700
rosa_wichuraiana	Rw6G033260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	264
AccII	CGCG	1 cut(s)	422
AclWI	GGATC	2 cut(s)	96, 109
AcuI	CTGAAG	2 cut(s)	46, 392
AfaI	GTAC	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	685
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	2 cut(s)	172, 406
AluI	AGCT	2 cut(s)	172, 406
Alw21I	GWGCWC	2 cut(s)	204, 453
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	96, 109
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	2 cut(s)	43, 355
AseI	ATTAAT	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	422, 678
AspS9I	GGNCC	2 cut(s)	43, 355
AsuC2I	CCSGG	2 cut(s)	587, 588
AvaI	CYCGRG	1 cut(s)	586
AxyI	CCTNAGG	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	204, 453
BccI	CCATC	2 cut(s)	50, 92
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcnI	CCSGG	2 cut(s)	587, 588
BcoDI	GTCTC	1 cut(s)	19
BfoI	RGCGCY	1 cut(s)	679
Bme1390I	CCNGG	2 cut(s)	587, 588
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	43, 355
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	2 cut(s)	587, 588
BmsI	GCATC	2 cut(s)	262, 451
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpuMI	CCSGG	2 cut(s)	587, 588
Bsa29I	ATCGAT	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	286, 586
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bse21I	CCTNAGG	1 cut(s)	114
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	2 cut(s)	286, 586
BseGI	GGATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	45, 357
BshVI	ATCGAT	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	204, 453
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	273, 587
BslFI	GGGAC	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	45, 357
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	2 cut(s)	204, 453
Bsp143I	GATC	3 cut(s)	79, 83, 101
BspANI	GGCC	2 cut(s)	45, 357
BspCNI	CTCAG	1 cut(s)	127
BspDI	ATCGAT	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	422
BspLI	GGNNCC	1 cut(s)	103
BspPI	GGATC	2 cut(s)	96, 109
BssECI	CCNNGG	2 cut(s)	286, 586
BssMI	GATC	3 cut(s)	79, 83, 101
BssNAI	GTATAC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	286
Bst1107I	GTATAC	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	588
BstC8I	GCNNGC	4 cut(s)	237, 424, 509, 674
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	679
BstHHI	GCGC	2 cut(s)	422, 678
BstKTI	GATC	3 cut(s)	82, 86, 104
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	3 cut(s)	79, 83, 101
BstMCI	CGRYCG	1 cut(s)	86
BstNSI	RCATGY	2 cut(s)	284, 471
BstSCI	CCNGG	2 cut(s)	585, 586
BstUI	CGCG	1 cut(s)	422
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BstZ17I	GTATAC	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	82
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	45, 357
BsuTUI	ATCGAT	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	543
Cac8I	GCNNGC	4 cut(s)	237, 424, 509, 674
CaiI	CAGNNNCTG	1 cut(s)	191
CfoI	GCGC	2 cut(s)	422, 678
Cfr13I	GGNCC	2 cut(s)	43, 355
Cfr9I	CCCGGG	1 cut(s)	586
ClaI	ATCGAT	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	281, 468, 623, 648
CviJI	RGCY	6 cut(s)	45, 60, 137, 172, 357, 406
CviKI_1	RGCY	6 cut(s)	45, 60, 137, 172, 357, 406
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	3 cut(s)	81, 85, 103
DpnII	GATC	3 cut(s)	79, 83, 101
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco130I	CCWWGG	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	534
Eco57I	CTGAAG	2 cut(s)	46, 392
Eco81I	CCTNAGG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	586
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	4 cut(s)	284, 471, 626, 651
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	4 cut(s)	280, 467, 622, 647
FauNDI	CATATG	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	264
FokI	GGATG	1 cut(s)	641
GlaI	GCGC	2 cut(s)	421, 677
HaeII	RGCGCY	1 cut(s)	679
HaeIII	GGCC	2 cut(s)	45, 357
HapII	CCGG	2 cut(s)	273, 587
HhaI	GCGC	2 cut(s)	422, 678
Hin1II	CATG	4 cut(s)	284, 471, 626, 651
Hin6I	GCGC	2 cut(s)	420, 676
HinP1I	GCGC	2 cut(s)	420, 676
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	2 cut(s)	206, 643
HpaI	GTTAAC	1 cut(s)	496
HpaII	CCGG	2 cut(s)	273, 587
Hpy166II	GTNNAC	3 cut(s)	50, 265, 496
Hpy188I	TCNGA	2 cut(s)	193, 213
Hpy188III	TCNNGA	3 cut(s)	116, 396, 436
Hpy8I	GTNNAC	3 cut(s)	50, 265, 496
HpyAV	CCTTC	2 cut(s)	547, 626
HpyCH4IV	ACGT	2 cut(s)	52, 361
HpyCH4V	TGCA	4 cut(s)	471, 569, 657, 672
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	2 cut(s)	52, 361
Hsp92II	CATG	4 cut(s)	284, 471, 626, 651
HspAI	GCGC	2 cut(s)	420, 676
KspAI	GTTAAC	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	79, 83, 101
LmnI	GCTCC	2 cut(s)	118, 169
LpnPI	CCDG	9 cut(s)	49, 101, 152, 286, 381, 421, 517, 600, 658
LweI	GCATC	2 cut(s)	262, 451
MaeII	ACGT	2 cut(s)	52, 361
MaeIII	GTNAC	2 cut(s)	35, 156
MalI	GATC	3 cut(s)	81, 85, 103
MboI	GATC	3 cut(s)	79, 83, 101
MboII	GAAGA	2 cut(s)	605, 652
MflI	RGATCY	1 cut(s)	101
MhlI	GDGCHC	2 cut(s)	204, 453
MluCI	AATT	3 cut(s)	514, 667, 685
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	18, 123, 470, 534, 567, 619
MseI	TTAA	4 cut(s)	125, 144, 495, 618
MslI	CAYNNNNRTG	1 cut(s)	627
MspI	CCGG	2 cut(s)	273, 587
MspR9I	CCNGG	2 cut(s)	587, 588
MvnI	CGCG	1 cut(s)	422
NciI	CCSGG	2 cut(s)	587, 588
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	3 cut(s)	79, 83, 101
NlaIII	CATG	4 cut(s)	284, 471, 626, 651
NlaIV	GGNNCC	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	156
NspI	RCATGY	2 cut(s)	284, 471
PfeI	GAWTC	1 cut(s)	643
Ple19I	CGATCG	1 cut(s)	86
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	43, 355
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	125, 144, 495, 618
Sau3AI	GATC	3 cut(s)	79, 83, 101
Sau96I	GGNCC	2 cut(s)	43, 355
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	587, 588
SduI	GDGCHC	2 cut(s)	204, 453
SetI	ASST	7 cut(s)	29, 55, 174, 364, 408, 558, 637
SfaNI	GCATC	2 cut(s)	262, 451
SmaI	CCCGGG	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	627
Sse9I	AATT	3 cut(s)	514, 667, 685
StyD4I	CCNGG	2 cut(s)	585, 586
StyI	CCWWGG	1 cut(s)	286
TaiI	ACGT	2 cut(s)	55, 364
TaqI	TCGA	4 cut(s)	23, 82, 86, 487
TasI	AATT	3 cut(s)	514, 667, 685
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	4 cut(s)	125, 144, 495, 618
Tru9I	TTAA	4 cut(s)	125, 144, 495, 618
TscAI	CASTG	1 cut(s)	543
TseFI	GTSAC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	5 cut(s)	298, 336, 399, 561, 645
TspMI	CCCGGG	1 cut(s)	586
TspRI	CASTG	1 cut(s)	543
VspI	ATTAAT	1 cut(s)	144
XceI	RCATGY	2 cut(s)	284, 471
XmaI	CCCGGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.