PHD-finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 |
| malus_domestica | MD15G1130200.v1.1 |
| prunus_persica | Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 |
| pyrus_communis | pycom15g11740 |
| rosa_chinensis | RchiOBHm_Chr1g0356281 RchiOBHm_Chr4g0425611 RchiOBHm_Chr6g0297291 |
| rosa_laevigata | RLG00000011614 |
| rosa_multiflora | Rmu_co8471549.1_g000001 Rmu_sc0004535.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00306840 Rroxscaffold_7G00170680 |
| rosa_rugosa | Rorug06G0270300 Rorug06G0270400 Rorug06G0270500 |
| rosa_samantha | Rh6AG381800 Rh6BG389800 Rh6CG395000 Rh6DG381700 |
| rosa_wichuraiana | Rw6G033260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 5537 |
| Acc36I | ACCTGC | 2 cut(s) | 2174, 5537 |
| Acc65I | GGTACC | 1 cut(s) | 302 |
| AccB1I | GGYRCC | 6 cut(s) | 302, 812, 1673, 3710, 5040, 5255 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1345, 3038 |
| AccBSI | CCGCTC | 1 cut(s) | 1780 |
| AccI | GTMKAC | 3 cut(s) | 2416, 5560, 6012 |
| AccII | CGCG | 2 cut(s) | 3403, 3560 |
| AcoI | YGGCCR | 1 cut(s) | 519 |
| AcuI | CTGAAG | 8 cut(s) | 1154, 1203, 1728, 2787, 2880, 3954, 5636, 5794 |
| AcyI | GRCGYC | 1 cut(s) | 813 |
| AdeI | CACNNNGTG | 1 cut(s) | 3097 |
| AfeI | AGCGCT | 1 cut(s) | 700 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 523, 585, 1345, 1784, 2287, 3033, 3038, 4606 |
| AflIII | ACRYGT | 2 cut(s) | 2208, 3401 |
| AgeI | ACCGGT | 1 cut(s) | 4967 |
| AhlI | ACTAGT | 1 cut(s) | 950 |
| AjiI | CACGTC | 1 cut(s) | 3397 |
| AjnI | CCWGG | 8 cut(s) | 516, 547, 1069, 1270, 1961, 2007, 2160, 4891 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 2622, 2654, 2745, 2777, 3159, 3191 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5841, 5873 |
| Alw21I | GWGCWC | 4 cut(s) | 1534, 5037, 5611, 5952 |
| Alw26I | GTCTC | 7 cut(s) | 124, 237, 1094, 2569, 3235, 4274, 4918 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 830, 1199, 2407, 2810, 3147, 5939 |
| Ama87I | CYCGRG | 4 cut(s) | 323, 580, 3981, 4222 |
| Aor51HI | AGCGCT | 1 cut(s) | 700 |
| ApaI | GGGCCC | 1 cut(s) | 548 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1189, 1221 |
| AseI | ATTAAT | 1 cut(s) | 5892 |
| AsiGI | ACCGGT | 1 cut(s) | 4967 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 738, 1588, 2446, 5680 |
| Asp718I | GGTACC | 1 cut(s) | 302 |
| AspLEI | GCGC | 4 cut(s) | 701, 815, 2725, 3556 |
| AsuC2I | CCSGG | 3 cut(s) | 382, 1682, 3616 |
| AsuHPI | GGTGA | 9 cut(s) | 855, 1260, 1991, 2369, 3021, 4469, 4781, 4982, 5588 |
| AvaI | CYCGRG | 4 cut(s) | 323, 580, 3981, 4222 |
| AvaII | GGWCC | 3 cut(s) | 1772, 1894, 3409 |
| AxyI | CCTNAGG | 3 cut(s) | 4839, 5178, 5862 |
| BaeGI | GKGCMC | 3 cut(s) | 548, 1790, 3102 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 651, 684, 3456, 3489 |
| BalI | TGGCCA | 1 cut(s) | 521 |
| BamHI | GGATCC | 6 cut(s) | 157, 1149, 1684, 4888, 5552, 5849 |
| BanI | GGYRCC | 6 cut(s) | 302, 812, 1673, 3710, 5040, 5255 |
| BanII | GRGCYC | 2 cut(s) | 548, 3864 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 3172, 3204, 4000, 4032 |
| BauI | CACGAG | 1 cut(s) | 933 |
| BbsI | GAAGAC | 3 cut(s) | 51, 3450, 4643 |
| Bbv12I | GWGCWC | 4 cut(s) | 1534, 5037, 5611, 5952 |
| BbvCI | CCTCAGC | 2 cut(s) | 1709, 4263 |
| BceAI | ACGGC | 2 cut(s) | 5169, 5778 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 3704, 3738, 3821, 3855, 5045, 5079, 5939, 5973 |
| BciT130I | CCWGG | 8 cut(s) | 518, 549, 1071, 1272, 1963, 2009, 2162, 4893 |
| BciVI | GTATCC | 1 cut(s) | 1069 |
| BclI | TGATCA | 2 cut(s) | 1879, 2497 |
| BcnI | CCSGG | 3 cut(s) | 382, 1682, 3616 |
| BcoDI | GTCTC | 7 cut(s) | 124, 237, 1094, 2569, 3235, 4274, 4918 |
| BcuI | ACTAGT | 1 cut(s) | 950 |
| BfoI | RGCGCY | 2 cut(s) | 702, 816 |
| BfuAI | ACCTGC | 2 cut(s) | 2174, 5537 |
| BfuI | GTATCC | 1 cut(s) | 1069 |
| BglII | AGATCT | 1 cut(s) | 2605 |
| Bme18I | GGWCC | 3 cut(s) | 1772, 1894, 3409 |
| BmeT110I | CYCGRG | 4 cut(s) | 323, 580, 3981, 4222 |
| BmgBI | CACGTC | 1 cut(s) | 3397 |
| BmrI | ACTGGG | 4 cut(s) | 840, 906, 2432, 3947 |
| BmuI | ACTGGG | 4 cut(s) | 840, 906, 2432, 3947 |
| BoxI | GACNNNNGTC | 2 cut(s) | 435, 4489 |
| BpiI | GAAGAC | 3 cut(s) | 51, 3450, 4643 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 4736, 4768, 5939, 5971 |
| BpmI | CTGGAG | 3 cut(s) | 1293, 3109, 4743 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1709, 3063, 4263 |
| BpuEI | CTTGAG | 3 cut(s) | 1418, 5013, 5250 |
| BpuMI | CCSGG | 3 cut(s) | 382, 1682, 3616 |
| Bsa29I | ATCGAT | 1 cut(s) | 5830 |
| BsaAI | YACGTR | 1 cut(s) | 2309 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1148 |
| BsaHI | GRCGYC | 1 cut(s) | 813 |
| BsaI | GGTCTC | 2 cut(s) | 124, 1094 |
| BsaWI | WCCGGW | 2 cut(s) | 4967, 5013 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1266, 1296, 2170, 2200, 2207, 2237 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 523, 585, 1345, 1784, 2287, 3033, 3038, 4606 |
| Bse118I | RCCGGY | 3 cut(s) | 133, 4498, 4967 |
| Bse21I | CCTNAGG | 3 cut(s) | 4839, 5178, 5862 |
| Bse3DI | GCAATG | 6 cut(s) | 35, 1104, 1593, 1880, 4561, 4947 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1148 |
| BseBI | CCWGG | 8 cut(s) | 518, 549, 1071, 1272, 1963, 2009, 2162, 4893 |
| BseCI | ATCGAT | 1 cut(s) | 5830 |
| BseJI | GATNNNNATC | 1 cut(s) | 1148 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 523, 585, 1345, 1784, 2287, 3033, 3038, 4606 |
| BseMI | GCAATG | 6 cut(s) | 35, 1104, 1593, 1880, 4561, 4947 |
| BseSI | GKGCMC | 3 cut(s) | 548, 1790, 3102 |
| BseYI | CCCAGC | 3 cut(s) | 1907, 3853, 3857 |
| BsgI | GTGCAG | 7 cut(s) | 1588, 2202, 2667, 3153, 3515, 5038, 5587 |
| Bsh1236I | CGCG | 2 cut(s) | 3403, 3560 |
| Bsh1285I | CGRYCG | 1 cut(s) | 5834 |
| BshNI | GGYRCC | 6 cut(s) | 302, 812, 1673, 3710, 5040, 5255 |
| BshTI | ACCGGT | 1 cut(s) | 4967 |
| BshVI | ATCGAT | 1 cut(s) | 5830 |
| BsiEI | CGRYCG | 1 cut(s) | 5834 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1534, 5037, 5611, 5952 |
| BsiHKCI | CYCGRG | 4 cut(s) | 323, 580, 3981, 4222 |
| BsiSI | CCGG | 8 cut(s) | 134, 381, 1681, 3615, 4499, 4968, 5014, 6021 |
| BslFI | GGGAC | 7 cut(s) | 423, 690, 1187, 3044, 3502, 3948, 5492 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 523, 585, 1345, 1784, 2287, 3033, 3038, 4606 |
| BsmAI | GTCTC | 7 cut(s) | 124, 237, 1094, 2569, 3235, 4274, 4918 |
| BsmBI | CGTCTC | 1 cut(s) | 4918 |
| BsmFI | GGGAC | 7 cut(s) | 423, 690, 1187, 3044, 3502, 3948, 5492 |
| BsmI | GAATGC | 5 cut(s) | 94, 1045, 1972, 3958, 5066 |
| Bso31I | GGTCTC | 2 cut(s) | 124, 1094 |
| BsoBI | CYCGRG | 4 cut(s) | 323, 580, 3981, 4222 |
| Bsp120I | GGGCCC | 1 cut(s) | 544 |
| Bsp1286I | GDGCHC | 8 cut(s) | 548, 1534, 1790, 3102, 3864, 5037, 5611, 5952 |
| Bsp19I | CCATGG | 3 cut(s) | 1939, 5385, 5600 |
| BspDI | ATCGAT | 1 cut(s) | 5830 |
| BspFNI | CGCG | 2 cut(s) | 3403, 3560 |
| BspHI | TCATGA | 1 cut(s) | 3871 |
| BspMAI | CTGCAG | 6 cut(s) | 507, 826, 1159, 2869, 4672, 5518 |
| BspMI | ACCTGC | 2 cut(s) | 2174, 5537 |
| BspQI | GCTCTTC | 1 cut(s) | 2776 |
| BspT107I | GGYRCC | 6 cut(s) | 302, 812, 1673, 3710, 5040, 5255 |
| BspTNI | GGTCTC | 2 cut(s) | 124, 1094 |
| BsrBI | CCGCTC | 1 cut(s) | 1780 |
| BsrDI | GCAATG | 6 cut(s) | 35, 1104, 1593, 1880, 4561, 4947 |
| BsrFI | RCCGGY | 3 cut(s) | 133, 4498, 4967 |
| BssAI | RCCGGY | 3 cut(s) | 133, 4498, 4967 |
| BssNAI | GTATAC | 3 cut(s) | 2417, 5561, 6013 |
| BssNI | GRCGYC | 1 cut(s) | 813 |
| BssSI | CACGAG | 1 cut(s) | 933 |
| Bst1107I | GTATAC | 3 cut(s) | 2417, 5561, 6013 |
| Bst2BI | CACGAG | 1 cut(s) | 933 |
| Bst2UI | CCWGG | 8 cut(s) | 518, 549, 1071, 1272, 1963, 2009, 2162, 4893 |
| Bst6I | CTCTTC | 9 cut(s) | 1594, 1820, 1851, 2625, 2776, 2796, 3917, 4037, 4586 |
| BstACI | GRCGYC | 1 cut(s) | 813 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 502, 2725 |
| BstBAI | YACGTR | 1 cut(s) | 2309 |
| BstDSI | CCRYGG | 4 cut(s) | 1939, 3558, 5385, 5600 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 521, 2285, 3031 |
| BstFNI | CGCG | 2 cut(s) | 3403, 3560 |
| BstH2I | RGCGCY | 2 cut(s) | 702, 816 |
| BstHHI | GCGC | 4 cut(s) | 701, 815, 2725, 3556 |
| BstMAI | GTCTC | 7 cut(s) | 124, 237, 1094, 2569, 3235, 4274, 4918 |
| BstMCI | CGRYCG | 1 cut(s) | 5834 |
| BstNI | CCWGG | 8 cut(s) | 518, 549, 1071, 1272, 1963, 2009, 2162, 4893 |
| BstNSI | RCATGY | 5 cut(s) | 1024, 2212, 2723, 4552, 6032 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 435, 4489 |
| BstSLI | GKGCMC | 3 cut(s) | 548, 1790, 3102 |
| BstSNI | TACGTA | 1 cut(s) | 2309 |
| BstUI | CGCG | 2 cut(s) | 3403, 3560 |
| BstV2I | GAAGAC | 3 cut(s) | 51, 3450, 4643 |
| BstX2I | RGATCY | 9 cut(s) | 157, 1149, 1568, 1684, 2534, 2605, 4888, 5552, 5849 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 299, 1087 |
| BstYI | RGATCY | 9 cut(s) | 157, 1149, 1568, 1684, 2534, 2605, 4888, 5552, 5849 |
| BstZ17I | GTATAC | 3 cut(s) | 2417, 5561, 6013 |
| Bsu15I | ATCGAT | 1 cut(s) | 5830 |
| Bsu36I | CCTNAGG | 3 cut(s) | 4839, 5178, 5862 |
| BsuI | GTATCC | 1 cut(s) | 1069 |
| BsuTUI | ATCGAT | 1 cut(s) | 5830 |
| BtgI | CCRYGG | 4 cut(s) | 1939, 3558, 5385, 5600 |
| BtgZI | GCGATG | 1 cut(s) | 152 |
| BtrI | CACGTC | 1 cut(s) | 3397 |
| BtsI | GCAGTG | 2 cut(s) | 1600, 5270 |
| BveI | ACCTGC | 2 cut(s) | 2174, 5537 |
| CaiI | CAGNNNCTG | 6 cut(s) | 830, 1199, 2407, 2810, 3147, 5939 |
| CciI | TCATGA | 1 cut(s) | 3871 |
| CfoI | GCGC | 4 cut(s) | 701, 815, 2725, 3556 |
| Cfr10I | RCCGGY | 3 cut(s) | 133, 4498, 4967 |
| Cfr42I | CCGCGG | 1 cut(s) | 3561 |
| ClaI | ATCGAT | 1 cut(s) | 5830 |
| CseI | GACGC | 1 cut(s) | 3409 |
| CspAI | ACCGGT | 1 cut(s) | 4967 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1764, 1799, 2086, 2121 |
| DinI | GGCGCC | 1 cut(s) | 814 |
| DraI | TTTAAA | 3 cut(s) | 3771, 4050, 4900 |
| DraIII | CACNNNGTG | 1 cut(s) | 3097 |
| EaeI | YGGCCR | 1 cut(s) | 519 |
| Eam1104I | CTCTTC | 9 cut(s) | 1594, 1820, 1851, 2625, 2776, 2796, 3917, 4037, 4586 |
| EarI | CTCTTC | 9 cut(s) | 1594, 1820, 1851, 2625, 2776, 2796, 3917, 4037, 4586 |
| Eco105I | TACGTA | 1 cut(s) | 2309 |
| Eco24I | GRGCYC | 2 cut(s) | 548, 3864 |
| Eco31I | GGTCTC | 2 cut(s) | 124, 1094 |
| Eco32I | GATATC | 2 cut(s) | 1239, 2706 |
| Eco47I | GGWCC | 3 cut(s) | 1772, 1894, 3409 |
| Eco47III | AGCGCT | 1 cut(s) | 700 |
| Eco57I | CTGAAG | 8 cut(s) | 1154, 1203, 1728, 2787, 2880, 3954, 5636, 5794 |
| Eco81I | CCTNAGG | 3 cut(s) | 4839, 5178, 5862 |
| Eco88I | CYCGRG | 4 cut(s) | 323, 580, 3981, 4222 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 521, 2285, 3031 |
| EcoO109I | RGGNCCY | 1 cut(s) | 545 |
| EcoRI | GAATTC | 1 cut(s) | 2017 |
| EcoRII | CCWGG | 8 cut(s) | 516, 547, 1069, 1270, 1961, 2007, 2160, 4891 |
| EcoRV | GATATC | 2 cut(s) | 1239, 2706 |
| EcoT22I | ATGCAT | 2 cut(s) | 1954, 2983 |
| EcoT38I | GRGCYC | 2 cut(s) | 548, 3864 |
| EgeI | GGCGCC | 1 cut(s) | 814 |
| EheI | GGCGCC | 1 cut(s) | 814 |
| Esp3I | CGTCTC | 1 cut(s) | 4918 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4142, 4174 |
| FaqI | GGGAC | 7 cut(s) | 423, 690, 1187, 3044, 3502, 3948, 5492 |
| FauI | CCCGC | 2 cut(s) | 715, 3565 |
| FauNDI | CATATG | 4 cut(s) | 1470, 4616, 4627, 5424 |
| FbaI | TGATCA | 2 cut(s) | 1879, 2497 |
| FblI | GTMKAC | 3 cut(s) | 2416, 5560, 6012 |
| FriOI | GRGCYC | 2 cut(s) | 548, 3864 |
| GlaI | GCGC | 4 cut(s) | 700, 814, 2724, 3555 |
| GsaI | CCCAGC | 3 cut(s) | 1911, 3857, 3861 |
| GsuI | CTGGAG | 3 cut(s) | 1293, 3109, 4743 |
| HaeII | RGCGCY | 2 cut(s) | 702, 816 |
| HapII | CCGG | 8 cut(s) | 134, 381, 1681, 3615, 4499, 4968, 5014, 6021 |
| HgaI | GACGC | 1 cut(s) | 3409 |
| HhaI | GCGC | 4 cut(s) | 701, 815, 2725, 3556 |
| Hin1I | GRCGYC | 1 cut(s) | 813 |
| Hin6I | GCGC | 4 cut(s) | 699, 813, 2723, 3554 |
| HinP1I | GCGC | 4 cut(s) | 699, 813, 2723, 3554 |
| HincII | GTYRAC | 8 cut(s) | 1066, 1506, 1837, 2941, 3586, 5470, 5650, 5728 |
| HindII | GTYRAC | 8 cut(s) | 1066, 1506, 1837, 2941, 3586, 5470, 5650, 5728 |
| HindIII | AAGCTT | 2 cut(s) | 3181, 4474 |
| HpaI | GTTAAC | 4 cut(s) | 1066, 1837, 2941, 3586 |
| HpaII | CCGG | 8 cut(s) | 134, 381, 1681, 3615, 4499, 4968, 5014, 6021 |
| HphI | GGTGA | 9 cut(s) | 855, 1260, 1991, 2369, 3021, 4469, 4781, 4982, 5588 |
| Hpy99I | CGWCG | 1 cut(s) | 58 |
| HpyCH4IV | ACGT | 3 cut(s) | 2308, 3396, 5800 |
| HpySE526I | ACGT | 3 cut(s) | 2308, 3396, 5800 |
| Hsp92I | GRCGYC | 1 cut(s) | 813 |
| HspAI | GCGC | 4 cut(s) | 699, 813, 2723, 3554 |
| KasI | GGCGCC | 1 cut(s) | 812 |
| KpnI | GGTACC | 1 cut(s) | 306 |
| Ksp22I | TGATCA | 2 cut(s) | 1879, 2497 |
| KspAI | GTTAAC | 4 cut(s) | 1066, 1837, 2941, 3586 |
| KspI | CCGCGG | 1 cut(s) | 3561 |
| LguI | GCTCTTC | 1 cut(s) | 2776 |
| MaeII | ACGT | 3 cut(s) | 2308, 3396, 5800 |
| MaeIII | GTNAC | 8 cut(s) | 536, 1957, 2890, 2951, 3089, 3397, 5783, 5904 |
| MbiI | CCGCTC | 1 cut(s) | 1780 |
| MfeI | CAATTG | 1 cut(s) | 5286 |
| MflI | RGATCY | 9 cut(s) | 157, 1149, 1568, 1684, 2534, 2605, 4888, 5552, 5849 |
| MhlI | GDGCHC | 8 cut(s) | 548, 1534, 1790, 3102, 3864, 5037, 5611, 5952 |
| MlsI | TGGCCA | 1 cut(s) | 521 |
| MluI | ACGCGT | 1 cut(s) | 3401 |
| MluNI | TGGCCA | 1 cut(s) | 521 |
| Mly113I | GGCGCC | 1 cut(s) | 813 |
| MlyI | GAGTC | 6 cut(s) | 5051, 5257, 5287, 5437, 5729, 5948 |
| MmeI | TCCRAC | 3 cut(s) | 386, 4737, 5186 |
| Mox20I | TGGCCA | 1 cut(s) | 521 |
| Mph1103I | ATGCAT | 2 cut(s) | 1954, 2983 |
| MroXI | GAANNNNTTC | 4 cut(s) | 738, 1588, 2446, 5680 |
| MscI | TGGCCA | 1 cut(s) | 521 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1085, 2658, 2927, 5384 |
| Msp20I | TGGCCA | 1 cut(s) | 521 |
| MspA1I | CMGCKG | 5 cut(s) | 1766, 2391, 2407, 3560, 3857 |
| MspI | CCGG | 8 cut(s) | 134, 381, 1681, 3615, 4499, 4968, 5014, 6021 |
| MunI | CAATTG | 1 cut(s) | 5286 |
| Mva1269I | GAATGC | 5 cut(s) | 94, 1045, 1972, 3958, 5066 |
| MvaI | CCWGG | 8 cut(s) | 518, 549, 1071, 1272, 1963, 2009, 2162, 4893 |
| MvnI | CGCG | 2 cut(s) | 3403, 3560 |
| NarI | GGCGCC | 1 cut(s) | 813 |
| NciI | CCSGG | 3 cut(s) | 382, 1682, 3616 |
| NcoI | CCATGG | 3 cut(s) | 1939, 5385, 5600 |
| NdeI | CATATG | 4 cut(s) | 1470, 4616, 4627, 5424 |
| NmeAIII | GCCGAG | 1 cut(s) | 3739 |
| NmuCI | GTSAC | 5 cut(s) | 536, 2951, 3089, 3397, 5904 |
| NsiI | ATGCAT | 2 cut(s) | 1954, 2983 |
| NspI | RCATGY | 5 cut(s) | 1024, 2212, 2723, 4552, 6032 |
| PaeI | GCATGC | 2 cut(s) | 2723, 4552 |
| PaeR7I | CTCGAG | 2 cut(s) | 580, 3981 |
| PagI | TCATGA | 1 cut(s) | 3871 |
| PaqCI | CACCTGC | 1 cut(s) | 5537 |
| PasI | CCCWGGG | 1 cut(s) | 1070 |
| PciI | ACATGT | 1 cut(s) | 2208 |
| PciSI | GCTCTTC | 1 cut(s) | 2776 |
| PctI | GAATGC | 5 cut(s) | 94, 1045, 1972, 3958, 5066 |
| PdmI | GAANNNNTTC | 4 cut(s) | 738, 1588, 2446, 5680 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1345, 3038 |
| PfoI | TCCNGGA | 1 cut(s) | 1680 |
| PinAI | ACCGGT | 1 cut(s) | 4967 |
| Ple19I | CGATCG | 1 cut(s) | 5834 |
| PleI | GAGTC | 6 cut(s) | 5051, 5257, 5286, 5437, 5729, 5948 |
| PluTI | GGCGCC | 1 cut(s) | 816 |
| PpsI | GAGTC | 6 cut(s) | 5051, 5257, 5286, 5437, 5729, 5948 |
| Ppu21I | YACGTR | 1 cut(s) | 2309 |
| PscI | ACATGT | 1 cut(s) | 2208 |
| PshAI | GACNNNNGTC | 2 cut(s) | 435, 4489 |
| PshBI | ATTAAT | 1 cut(s) | 5892 |
| Psp6I | CCWGG | 8 cut(s) | 516, 547, 1069, 1270, 1961, 2007, 2160, 4891 |
| PspFI | CCCAGC | 3 cut(s) | 1907, 3853, 3857 |
| PspGI | CCWGG | 8 cut(s) | 516, 547, 1069, 1270, 1961, 2007, 2160, 4891 |
| PspOMI | GGGCCC | 1 cut(s) | 544 |
| PspXI | VCTCGAGB | 1 cut(s) | 580 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 5484, 5516 |
| PstI | CTGCAG | 6 cut(s) | 507, 826, 1159, 2869, 4672, 5518 |
| PstNI | CAGNNNCTG | 6 cut(s) | 830, 1199, 2407, 2810, 3147, 5939 |
| PsuI | RGATCY | 9 cut(s) | 157, 1149, 1568, 1684, 2534, 2605, 4888, 5552, 5849 |
| PvuI | CGATCG | 1 cut(s) | 5834 |
| PvuII | CAGCTG | 4 cut(s) | 1766, 2391, 2407, 3857 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1085, 2658, 2927, 5384 |
| SacII | CCGCGG | 1 cut(s) | 3561 |
| SapI | GCTCTTC | 1 cut(s) | 2776 |
| SchI | GAGTC | 6 cut(s) | 5051, 5257, 5287, 5437, 5729, 5948 |
| SduI | GDGCHC | 8 cut(s) | 548, 1534, 1790, 3102, 3864, 5037, 5611, 5952 |
| SfoI | GGCGCC | 1 cut(s) | 814 |
| Sfr274I | CTCGAG | 2 cut(s) | 580, 3981 |
| Sfr303I | CCGCGG | 1 cut(s) | 3561 |
| SgrBI | CCGCGG | 1 cut(s) | 3561 |
| SinI | GGWCC | 3 cut(s) | 1772, 1894, 3409 |
| SlaI | CTCGAG | 2 cut(s) | 580, 3981 |
| SmiI | ATTTAAAT | 1 cut(s) | 3771 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1085, 2658, 2927, 5384 |
| SmlI | CTYRAG | 5 cut(s) | 580, 1433, 3981, 5028, 5265 |
| SmoI | CTYRAG | 5 cut(s) | 580, 1433, 3981, 5028, 5265 |
| SnaBI | TACGTA | 1 cut(s) | 2309 |
| SpeI | ACTAGT | 1 cut(s) | 950 |
| SphI | GCATGC | 2 cut(s) | 2723, 4552 |
| SspDI | GGCGCC | 1 cut(s) | 812 |
| SspI | AATATT | 4 cut(s) | 625, 739, 3916, 4414 |
| SwaI | ATTTAAAT | 1 cut(s) | 3771 |
| TaiI | ACGT | 3 cut(s) | 2311, 3399, 5803 |
| TaqII | GACCGA | 1 cut(s) | 3462 |
| TauI | GCSGC | 1 cut(s) | 3760 |
| TseFI | GTSAC | 5 cut(s) | 536, 2951, 3089, 3397, 5904 |
| Tsp45I | GTSAC | 5 cut(s) | 536, 2951, 3089, 3397, 5904 |
| TspGWI | ACGGA | 1 cut(s) | 4900 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1345, 3038 |
| VpaK11BI | GGWCC | 3 cut(s) | 1772, 1894, 3409 |
| VspI | ATTAAT | 1 cut(s) | 5892 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 521, 2285, 3031 |
| XbaI | TCTAGA | 4 cut(s) | 614, 683, 2794, 5746 |
| XceI | RCATGY | 5 cut(s) | 1024, 2212, 2723, 4552, 6032 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1937, 2005, 3205 |
| XhoI | CTCGAG | 2 cut(s) | 580, 3981 |
| XmiI | GTMKAC | 3 cut(s) | 2416, 5560, 6012 |
| XmnI | GAANNNNTTC | 4 cut(s) | 738, 1588, 2446, 5680 |
| Zsp2I | ATGCAT | 2 cut(s) | 1954, 2983 |