Rorug06G0270300

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004222
Physical Location & Seq
Forward (+)
41729805 .. 41731426
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0270300.1

Sequence Viewer

Length: 435 bp
ATGGATCCTCCTCATGGATGCAGGTCATGGAGGCCGTGCTTACTTCACCATCCCCACCACCATCTTCACCATCACCATCATCACCACCCCTTATTCCTCAACCCCCACCACCACCACCATCACCACCACCACTTCAACTGCCACCACCACCATGTTCGCCCCAATTTCACATCTTTTGCTCAAAACCCAGAACAAGCTACTCCCGTTCCTTTCCCAACCTATTCAAAGTCGGAAACTTCTGGGATCAAAGGCGCGTACGATTACAATCCTACCCCCCTGGTATTGCAGGAGCAGAATCATGATGATGTTGCGTTAGAAGAGGAAGAGGATGATGACCCAATTTTCGTCTTAACTGATGAATGGAAAGAATTTTTCGCGAAATCTGAAGCTAAGAGGAAACTAGAGAGGAAGCAAGCTAAAAAGGGAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

144

Amino Acids

17.13

Weight (kDa)

6.83

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 12
AccII CGCG 2 cut(s) 254, 377
AclWI GGATC 2 cut(s) 12, 251
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 2 cut(s) 136, 225
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 3 cut(s) 197, 389, 416
AluI AGCT 3 cut(s) 197, 389, 416
AlwI GGATC 2 cut(s) 12, 251
AoxI GGCC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 368
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 5 cut(s) 38, 59, 65, 74, 113
BamHI GGATCC 1 cut(s) 4
BccI CCATC 5 cut(s) 57, 69, 78, 84, 126
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 1 cut(s) 278
BfaI CTAG 1 cut(s) 401
BfuAI ACCTGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse8I GATNNNNATC 1 cut(s) 264
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 3 cut(s) 23, 49, 334
BseJI GATNNNNATC 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 14
Bsh1236I CGCG 2 cut(s) 254, 377
BshFI GGCC 1 cut(s) 34
BsiWI CGTACG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 14
BsnI GGCC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 4, 243
Bsp68I TCGCGA 1 cut(s) 377
BspANI GGCC 1 cut(s) 34
BspFNI CGCG 2 cut(s) 254, 377
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 12
BspPI GGATC 2 cut(s) 12, 251
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 4, 243
Bst2UI CCWGG 1 cut(s) 278
Bst6I CTCTTC 2 cut(s) 312, 318
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 3 cut(s) 23, 49, 334
BstFNI CGCG 2 cut(s) 254, 377
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 2 cut(s) 7, 246
BstMBI GATC 2 cut(s) 4, 243
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstUI CGCG 2 cut(s) 254, 377
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 34
BtsCI GGATG 3 cut(s) 23, 49, 334
BtuMI TCGCGA 1 cut(s) 377
BveI ACCTGC 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 414
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 256
CviAII CATG 4 cut(s) 14, 27, 152, 299
CviJI RGCY 4 cut(s) 34, 197, 389, 416
CviKI_1 RGCY 4 cut(s) 34, 197, 389, 416
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 1 cut(s) 390
DpnI GATC 2 cut(s) 6, 245
DpnII GATC 2 cut(s) 4, 243
Eam1104I CTCTTC 2 cut(s) 312, 318
EarI CTCTTC 2 cut(s) 312, 318
Eco57I CTGAAG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 4 cut(s) 17, 30, 155, 302
FaiI YATR 4 cut(s) 15, 28, 153, 300
FatI CATG 4 cut(s) 13, 26, 151, 298
FokI GGATG 3 cut(s) 30, 36, 341
FspBI CTAG 1 cut(s) 401
GlaI GCGC 1 cut(s) 253
HaeIII GGCC 1 cut(s) 34
HhaI GCGC 1 cut(s) 254
Hin1II CATG 4 cut(s) 17, 30, 155, 302
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 1 cut(s) 295
HphI GGTGA 5 cut(s) 38, 59, 65, 74, 113
Hpy188I TCNGA 2 cut(s) 232, 385
Hpy188III TCNNGA 2 cut(s) 299, 376
HpyCH4V TGCA 2 cut(s) 21, 286
HpyF3I CTNAG 1 cut(s) 390
Hsp92II CATG 4 cut(s) 17, 30, 155, 302
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 2 cut(s) 4, 243
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 6 cut(s) 7, 201, 225, 263, 272, 290
LweI GCATC 1 cut(s) 8
MaeI CTAG 1 cut(s) 401
MalI GATC 2 cut(s) 6, 245
MboI GATC 2 cut(s) 4, 243
MboII GAAGA 3 cut(s) 56, 329, 335
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 163, 339, 368
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 8 cut(s) 18, 21, 24, 107, 313, 319, 387, 399
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 2 cut(s) 150, 303
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 2 cut(s) 254, 377
NdeII GATC 2 cut(s) 4, 243
NlaIII CATG 4 cut(s) 17, 30, 155, 302
NlaIV GGNNCC 1 cut(s) 6
NruI TCGCGA 1 cut(s) 377
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 1 cut(s) 295
Pfl23II CGTACG 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspLI CGTACG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 150, 303
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 2 cut(s) 4, 243
ScrFI CCNGG 1 cut(s) 278
SetI ASST 5 cut(s) 26, 199, 221, 391, 418
SfaNI GCATC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 150, 303
Sse9I AATT 3 cut(s) 163, 339, 368
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 276
TasI AATT 3 cut(s) 163, 339, 368
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 372
XapI RAATTY 1 cut(s) 368
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.