Rh6BG389800

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0004222
Physical Location & Seq
Forward (+)
61813673 .. 61826653
12981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG389800.1

Sequence Viewer

Length: 6444 bp
ATGGAGAACTGGTGGATGAACAAATGTAATTCGACATTGCCTTCAATAGCTTCGTCGTCTTCTCAGGAGCTTCGGAATCAGATGGAGAATGCAGGCTATTTTTCTTGTCCCCATGGCTCACAAGATTTGAGACCAGCGATGCTTGGTAGGTTGCAGGATCCTCTGCTTTCCAGCATCCAGAGTTCAGGTTCCCACAGATCAGAACATGTTAATTTGGGAAATTCTTTTCTGTCTCTCCTATCTGGGTCGCCATCACTATTGCAGCGTGATTTTCAAGATTTCTCAAATTCCCAACCTATTGGTACCTCTGGTAAAATTCTACCCGAGGGTAATAATTCCATTCTAAACGGTACTCAAAATGCCATCCCGTTGTCATCCACCGGGCTACCATCAGAAAAGTTGAGTTGGAAAAATCTGCAAAGTGGAGCAGACTTCTGTCCCAATGGATCATCAAAGGTAGTGCCAAGTTCCATTTGTGCCAGCAATTCTGTATTGCATGATCTGCAGAGTTCAGACCTGGCCAAGGTAGTCATCTGTCACATGGGCCCTGGTAATGAGAAACTAAAGACTTCTTATGCCTCGAGTGGGGAATGGCACAGTGCTGCTCCTGCATCTAGAGGAAATATTCAAATTTCTGAAAAAATGCCACTGGAAGCAAACACCTTCGTATCTAATCAGGCATCTAGAGTATGTCATAGCGCTAGTCCTGCAGATTCTTGGAAGGCTTGTAGAGAAAATATTCATACTTCACAAAAAATACCACTGGAAGCAAACTCTTTTATTTCTTATCAGGCATCTAGTTTATGGCATGGCGCCAGTCCTGCAGACACTGGGAAGGCTTGTAGAGCTAACATTGAAACTTCACCAAAAATGCCAGTGGAAGCATACTCTTTTATATCTAACCAGCCACCCAGTTTTATGAATGGTTGCCCTCGTGTTTTCTGCTCGACTACTAGTGGCTATCTACTTCTTAGCAATACAGGACTTCTTGGTATTGTTTGCTCTTGCCATTCTTTCCGCATGTCTGCGTTTAAGTTTTGTGAGCATTCAGGATTATATGGTGTTAACCCAGGGGATGCCATTCGCATGGACAGTGAAGAGACCATTGCTCAATGGTGCAAGCTCTATCTCCCGAAGTTTGGGATTAGGATCCCTGCAGATAAGAATGAATGGGACTGGCCTGAAGAATTATCAGCAACTGCCAGTTTGATGAAATCTAGTGTGCCTATGCCAAAGATATCCAATAGCTCGTCTGATTTGGTCTTTTCACCTGGAGGTTCAGTAAGTTCTAAACAGTCTTTTGATGGTGTTTCGCTATCAAAGAATTTTATTCCAAGCCAGAGTTTGGTTATTAGTGCTGTATCAAATAAACCCAAAAGGGCATCATCAGATAGACCCGAAAGGAACATTCAGGGTACTAACAACCTGTTTCTCAAGGCTTTGACTGGTACTTCACAGAGCAATTTGCATATGGCAGATAACCTGTTAATGGAGCGTGCCATGTCAACATCAAAGTTAGTTGGTAATGGTGCACAAGATGGTTGTCAGTCTATTTCTGCTTATAGTGGATCTATGCACAATAGAACCTCTTCCATTGCCCACCCCACTTTACAGGAACGAAGAATCATTGGTAAAGAATCAGACTTTTGCAGAATTGAAAACACAAAGGATGGTGCCTTCCGGGATGCTGCGATTTCAAATATAGAGCTGAGGCTTGGTCAACCTTACCAGTTGGCTCAAACTTCAGGAACTCCTGATCTGTCAGCTGTAGGACCACCGCTCTTGGGCACTGTTGTAAATCCAATGAAATCTCTCTTCCCTCAACAGATGATTGCTAACAGAGCGAATTGCAGGGAAGAGGTGGAATTGGGGCAATGTGATCATTTTTCTGTGGACCCATCCAATCCCAGCAGAAATAGAGATCGGAACCAGTTAAACCATGGAATCAATGCATTTGTAATCAGGAATGCCATAGATGATGAAAGGGTAGAGAAATCCAGTAGCAACCTGGGCCAGAATTCTGTGATTTCAGTTCTTACCAATCTCAAATCTCCATCTAACGAAAATACACAATCAAAAGCCAATAACTATATGTTCAATGACAGTGGGAATACTATGAGAAATACACTACATTCTGAACCTCTACCGGTCAAGTATGACCTGGCTACTGTCCTGCAGAGTGCAGGTAATAGTGAAAGGCAACAGGACATGTTGCACTTTGGCTCCTATAAACTAAAAGACAATGATAAAGGGCTGAGTTTTGCTGCTGATGGCTCTTACCTTGCAAAGGATTTGGGGTATAGAATACGCAAGGAAATGGAAGTTTCTAGCTCTTTCAATAGGTTGAGTGGTAATGGTGAACCTAATTTTTTAACAGCATATAGAAACAGCTGCTACTCACAGCAGTTGTCGGGTATACCACTGGGTACACCTGATTCCAGAATAAGTTCCAACTATCCTGAGAAGGTTATTTCTTTTGCAAATAGTGGGCAAGTTGATCATGTCTACCTTCGACCCTTGGCTTCATCTATGGGATCTGGGATGAAAGTTCCTACTCAGGCAGTCTCAAAAGGTGTTCCTGTGAGTGCATCAACCTCTTTAGCAGATCTGATACCACCTTTCTGTAGGGAAGAGTTCATTGGAGTTCACACTCATTTGCGTGATGATAAATTACAAGTGTCTGCACCAAGGCAAATGCAAGAGATATCGAAGCAACAGCATGCGCTGCCTTCCCTTTCTAAGAACCAAGGGGAAGGAAGATTTGGTTGCTCTTCCTATATGCAGCATCCTCTTCTAGAAACTTCAGCATCTGGGAAGCAAAGCCACAAACATAGTCTTAGCAATAAATATGATGTTTCTGAAGCTGCAGTTAATCCACTCCAATCTGGTGTTACCTGTAGGATTGGAACTGATGAAGGTTTTGTTTCCATGACAGGTGTTAACTGCTGTTGTCACTTCTCACGATATAAACAAGGAAATGCATTAGATTCTAAAGAAGTTGATCTGAAACATCAAATTGGGCAGCCCTCACCAAGGATTGGAAAGAAGTCCAAGGACGTCCCTGAGCCTAGTGAGCAAGAAGAAAGGTGCTGTCACAAAGTGCCCTGTGGTAATTTTCATGGCAGCTCCAGTTGTGCAGCCTACAGAAACTGTTTAGAAAGGAATTTTGAATCAAGAATTGGAAGCTTACCTACTGTGTCCAAGGGTCAAATGGGAACAGTCAATAGTGAAGTCTCTATGATATTTTCTCCACAATTTGCTAACAGCCAAATTATTCCGAAGGATAAACCTGTTTCCTTAGATCATAAGAGAAAGTTGAGTGGAGAAGTACCCAATAACAATGCTTATCATACTTCTCAGTGGAGAGATGTGCCAAGTAAGGTCAAAGGGGTTTCTGACGTGACGCGTGTGGACCGTTTAGCTAATCTGTTTGATGCAACAAGAGAAGACCGAGAGAAACTTGGAGATACTTGCGTTGAATGCTTCAATGGGACTGTGCAGATGGCGAACTCCATGAAAGAGCATGAAGTATCTGATATATCTTCTGGATGCTCTGCGCCCGCGGTTAGTCAGCCATCAATAGAGGTTAACAATATGGGTTCTTCAACTAATGATGCCGGGGATAATGGATGTGGAAGCAATTTTGTTGTTGATGAAGGATCAGGCATTGACAAAGCGTGGTCATCGGATGATGCACTTGAAAGTGAAAAAGGTGCCGAGTTCCTTGCCTCTACTGGTTCCAGCCTGAGAAAAATCGGGCCTCCCAAGAATTTAAATCGTCAATCTTCATCTTGCCTTCTTGATGACCTTAAACTCCTAAACTCTTTAACATGGCAGAAAGGTCGAGATCATATCCCAGCCGGGCTCGCCCTTCATGATAAAGACAAACATCTTCATAACTTGGAACAAGGCTTGAATATTAAGAAGAGAAAGAGAGAACTGGGATTGAAATTGAATGCTTCATGTCCCACTTCAGATTCTTCTCGAGTAAGACAAGAGAATCCCAAAAGTAATGGCACTTCTCAGTTTATTTCCCGACCATCGAAGAGTTTAAAGATGCTTTTAACATCAAGGAAATCGGAAACTCATGCCATTGGGAACTGCATTACTCAATCCGGTTCTAAACCCAGACTACATATATCATGTTCAGCAAAGAAACTCTTGCATAGAAGTGATTTACACAGACTACATAATGATAAAGACAGTGAAGTGAATAGTGTTTTCCCGAGAGAACTAAATGGTGTTAGTAACAATTATGAAATTGCTGAAGTTTCTGGTGGGGAGACAGGTAAAAGAGATTGCAGTACCAATGCTTTTAGTCAGTTCCAGATAGAAGAATCTAGTCGAGAAGATGCTAAAAAAACAAAGTGCAATTCTGTAGATGGTTTCAAATCAACTTCTAGTCAGCAAGTGAATATTGGTCATAGGAAGGCAAGGCCAATAGTATGGGGAATATATGGTGAATTAACTGATGGAAGCTTGACTGGACAAAGGTCAAAACCGGCAAAACTTGTTCCTCTCAGCAGGGTTCTTAATTCTTCCCGAAAGTGCATGCTCCCCAAACTTTGCAACTCTAAATCAACTTCCATGAGGAAGAGGAACCTTGGTGGGGATGTCATATGCAATACATATGACTTGAAGACTGAAAAATACAACAAATGTTGTAATGCTACAGTTAAAATCAATGATACTTCCATGAGAAAAAAGAAGAAAGAACGCTCCACTGGAGACAGGGAATTTCATAAAGAGCTGTTCTCGTTGGAGAAACAAGGAGATGTTCAAAGTGAAAAGGATCATCGTAAGCTAGACGGTATTACCCATACTCAATCGCAGCTGAAGCCTAAGGAAATTCGGAAACGCAGCATATATGAATTGACAGAAAAAGGGGAGGATCCCGGCTTTAAAAGTTCTTCCGTCGCAAAGATTTCAATTTGCCTGCCAGCAATGAAAGACTGCAAACTTCTAAATACCAGTGAAGTTGGTGGATTATGCCAACATAGTGCTAAAAACAAATTCCGGTGCAGTTCTACTCAAGAGCACTGGTGCCATAGTGATCTCGACTCAGTTGCATTCTGCTGTGTCTGTGGTAGCTCAAACCAAGATGAAATCAATAACTTATTGGAGTGTAGTCAATGTTTAATCAGAGTGCATCAGGCTTGTTATGGTGTGTCAAAAGTACCTAAGGGCCGTTGGTCTTGCAGGCCATGTCGGACGAGTTCAAAAGATATTGTATGCGTTCTTTGTGGTTATGGTGGTGGTGCCATGACTCAAGCACTGCGGAGTCAGACAATTGTTGAAAGCATTTTAAGAGCTTGGAACATTGAAACAGAAAGTGGGCCCAAGAATGAGCTTTGTTCTGTTAGTAAGACTAAGGTACATAACAGCATTACCATGGGATTAGTTGATTCAGCAACTAAACAGTGGGTTCATATGGTTTGTGGGCTTTGGACTCCTGAAACACGATGCCCGAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTCCAGTCCCTACTGCAGATATGATTTGCTGTATGTGTAAGCGAGCAGGTGGCTCCTGTATACAGTGCAGGGTTGAAAATTGTTCTGTTCGATTTCACCCATGGTGTGCTCATCTGAAGGGTCTGTTGCAAACCGAGGTTGAAGGCGTTGACAATGAGAATGTTGGTTTTTATGGAAGATGTTCACTTCATGCTACGCATCCCATTTGTAAATCAGACTATCCTGTTGACACTGACTCTGGTTGTCTGGAGGAAAAGAAATTAGCCTGTGCCAGAACTGAGGGTTACAAGGGCCGTAAACGTGATGGCTTCAGGCATAACTATTGTGATCGATCAAAAGGAAGTGATGGATCCCTTGTTCCTCAGGAGCAGTTAAATGCTTGGGCTTATATTAATGGGCATAAGTCATGCACACAGGAGCTTCCTAAACTGGCAGTATCTGATATAGAGCATGACTCTCGGAAAGAATACACACGCTATAAGCAAGCAAAGTCTTGGAAGCATCTTGTAGTATACAAGTCCGGCATACATGCCCTTGGTCTTTACACATCTCGGTTCATTTCCCGTGATGAAATGGTTGTTGAGTATGTTGGAGAGATTGTGGGGCAACGTGTTGCTGATAAAAGGGAAAATGAATATCAATCTGGAAAAAAGCTTCAGTACAAGAGCGCGTGCTACTTTTTCAGGATAGACAAAGAGCACATCATTGATGCTACATGCAAAGGGGGGATTGCTCGATTTGTTAACCATTCCTGCTCGCCAAATTGCGTTGCCAAAGTGATATCAGTGAGGAATGAAAAGAAGGTTGTATTTCTTGCAGAGAGGGACATTTTCCCGGGAGAAGAGATTACATATGACTACCATTTTAACCATGAGGATGAAGGTAAGAAGATTCCATGTTCTTGTAACTCAAAGAATTGCAGGCGCTACTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

2147

Amino Acids

236.14

Weight (kDa)

8.7

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 328 - 374 3.2e-11 Tify domain binding domain
PHD_2 PF13831 1704 - 1736 1.1e-08 PHD-finger
zf-HC5HC2H_2 PF13832 1804 - 1887 6.1e-17 PHD-zinc-finger like domain
zf-HC5HC2H PF13771 1810 - 1899 6.2e-13 PHD-like zinc-binding domain
SET PF00856 2014 - 2122 2.1e-24 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 5543
AatII GACGTC 1 cut(s) 3060
Acc36I ACCTGC 2 cut(s) 2174, 5543
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 6 cut(s) 302, 812, 1673, 3713, 5043, 5258
AccB7I CCANNNNNTGG 2 cut(s) 1345, 3038
AccBSI CCGCTC 1 cut(s) 1780
AccI GTMKAC 4 cut(s) 2416, 2505, 5566, 6018
AccII CGCG 3 cut(s) 3406, 3563, 6176
AciI CCGC 5 cut(s) 1018, 1778, 3561, 3563, 5278
AcoI YGGCCR 1 cut(s) 519
AcyI GRCGYC 2 cut(s) 813, 3057
AdeI CACNNNGTG 1 cut(s) 3100
AfeI AGCGCT 1 cut(s) 700
AflIII ACRYGT 4 cut(s) 205, 2208, 3404, 6115
AgeI ACCGGT 1 cut(s) 2146
AhlI ACTAGT 1 cut(s) 953
AjiI CACGTC 1 cut(s) 3400
AjnI CCWGG 6 cut(s) 516, 547, 1069, 1270, 2007, 2160
AjuI GAANNNNNNNTTGG 6 cut(s) 2622, 2654, 2745, 2777, 3162, 3194
AloI GAACNNNNNNTCC 2 cut(s) 5847, 5879
Alw21I GWGCWC 4 cut(s) 1534, 5040, 5617, 6207
Alw26I GTCTC 7 cut(s) 124, 237, 1094, 2569, 3238, 4277, 4722
Alw44I GTGCAC 1 cut(s) 1530
AlwNI CAGNNNCTG 5 cut(s) 830, 1199, 2810, 3150, 5945
Ama87I CYCGRG 5 cut(s) 323, 580, 3984, 4225, 6340
Aor51HI AGCGCT 1 cut(s) 700
ApaI GGGCCC 2 cut(s) 548, 5340
ApaLI GTGCAC 1 cut(s) 1530
AseI ATTAAT 1 cut(s) 5898
AsiGI ACCGGT 1 cut(s) 2146
Asp700I GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5686
Asp718I GGTACC 1 cut(s) 302
AspLEI GCGC 6 cut(s) 701, 815, 2725, 3559, 6176, 6432
AsuC2I CCSGG 7 cut(s) 382, 1682, 3619, 3862, 4896, 6341, 6342
AsuHPI GGTGA 6 cut(s) 855, 1260, 2369, 3021, 4472, 5594
AvaI CYCGRG 5 cut(s) 323, 580, 3984, 4225, 6340
AvaII GGWCC 3 cut(s) 1772, 1894, 3412
AxyI CCTNAGG 3 cut(s) 4842, 5181, 5868
BaeGI GKGCMC 5 cut(s) 548, 1534, 1790, 3105, 5340
BaeI ACNNNNGTAYC 4 cut(s) 651, 684, 3459, 3492
BalI TGGCCA 1 cut(s) 521
BamHI GGATCC 4 cut(s) 157, 1149, 4891, 5855
BanI GGYRCC 6 cut(s) 302, 812, 1673, 3713, 5043, 5258
BanII GRGCYC 3 cut(s) 548, 3867, 5340
BarI GAAGNNNNNNTAC 4 cut(s) 3175, 3207, 4003, 4035
BauI CACGAG 1 cut(s) 933
BbsI GAAGAC 3 cut(s) 51, 3453, 4646
Bbv12I GWGCWC 4 cut(s) 1534, 5040, 5617, 6207
BbvCI CCTCAGC 1 cut(s) 1709
BceAI ACGGC 2 cut(s) 5172, 5784
BcgI CGANNNNNNTGC 8 cut(s) 3707, 3741, 3824, 3858, 5048, 5082, 5945, 5979
BciT130I CCWGG 6 cut(s) 518, 549, 1071, 1272, 2009, 2162
BclI TGATCA 2 cut(s) 1879, 2497
BcnI CCSGG 7 cut(s) 382, 1682, 3619, 3862, 4896, 6341, 6342
BcoDI GTCTC 7 cut(s) 124, 237, 1094, 2569, 3238, 4277, 4722
BcuI ACTAGT 1 cut(s) 953
BfoI RGCGCY 3 cut(s) 702, 816, 6433
BfuAI ACCTGC 2 cut(s) 2174, 5543
BglII AGATCT 1 cut(s) 2605
Bme18I GGWCC 3 cut(s) 1772, 1894, 3412
BmeT110I CYCGRG 5 cut(s) 323, 580, 3984, 4225, 6340
BmgBI CACGTC 1 cut(s) 3400
BmrI ACTGGG 4 cut(s) 840, 906, 2432, 3950
BmuI ACTGGG 4 cut(s) 840, 906, 2432, 3950
BoxI GACNNNNGTC 2 cut(s) 435, 4492
BpiI GAAGAC 3 cut(s) 51, 3453, 4646
BplI GAGNNNNNCTC 4 cut(s) 4739, 4771, 5945, 5977
BpmI CTGGAG 4 cut(s) 1293, 3112, 4746, 5774
Bpu10I CCTNAGC 2 cut(s) 1709, 3063
BpuEI CTTGAG 3 cut(s) 1418, 5016, 5253
BpuMI CCSGG 7 cut(s) 382, 1682, 3619, 3862, 4896, 6341, 6342
Bsa29I ATCGAT 1 cut(s) 5836
BsaBI GATNNNNATC 1 cut(s) 1148
BsaHI GRCGYC 2 cut(s) 813, 3057
BsaI GGTCTC 2 cut(s) 124, 1094
BsaWI WCCGGW 3 cut(s) 2146, 4115, 5016
BsaXI ACNNNNNCTCC 7 cut(s) 26, 1266, 1296, 2207, 2237, 6090, 6120
Bse118I RCCGGY 2 cut(s) 2146, 4501
Bse21I CCTNAGG 3 cut(s) 4842, 5181, 5868
Bse3DI GCAATG 5 cut(s) 35, 1104, 1593, 1880, 4950
Bse8I GATNNNNATC 1 cut(s) 1148
BseBI CCWGG 6 cut(s) 518, 549, 1071, 1272, 2009, 2162
BseCI ATCGAT 1 cut(s) 5836
BseJI GATNNNNATC 1 cut(s) 1148
BseMI GCAATG 5 cut(s) 35, 1104, 1593, 1880, 4950
BseSI GKGCMC 5 cut(s) 548, 1534, 1790, 3105, 5340
BseYI CCCAGC 2 cut(s) 1907, 3856
BsgI GTGCAG 6 cut(s) 2202, 2667, 3156, 3518, 5041, 5593
Bsh1236I CGCG 3 cut(s) 3406, 3563, 6176
BshNI GGYRCC 6 cut(s) 302, 812, 1673, 3713, 5043, 5258
BshTI ACCGGT 1 cut(s) 2146
BshVI ATCGAT 1 cut(s) 5836
BsiHKAI GWGCWC 4 cut(s) 1534, 5040, 5617, 6207
BsiHKCI CYCGRG 5 cut(s) 323, 580, 3984, 4225, 6340
BslFI GGGAC 8 cut(s) 93, 423, 1187, 3044, 3505, 3951, 5498, 6344
BsmAI GTCTC 7 cut(s) 124, 237, 1094, 2569, 3238, 4277, 4722
BsmFI GGGAC 8 cut(s) 93, 423, 1187, 3044, 3505, 3951, 5498, 6344
BsmI GAATGC 6 cut(s) 94, 1045, 1972, 3485, 3961, 5069
Bso31I GGTCTC 2 cut(s) 124, 1094
BsoBI CYCGRG 5 cut(s) 323, 580, 3984, 4225, 6340
Bsp120I GGGCCC 2 cut(s) 544, 5336
Bsp1286I GDGCHC 9 cut(s) 548, 1534, 1790, 3105, 3867, 5040, 5340, 5617, 6207
Bsp19I CCATGG 4 cut(s) 112, 1939, 5391, 5606
BspACI CCGC 5 cut(s) 1018, 1778, 3561, 3563, 5278
BspDI ATCGAT 1 cut(s) 5836
BspFNI CGCG 3 cut(s) 3406, 3563, 6176
BspHI TCATGA 1 cut(s) 3874
BspMAI CTGCAG 7 cut(s) 507, 712, 826, 1159, 2178, 2869, 5524
BspMI ACCTGC 2 cut(s) 2174, 5543
BspQI GCTCTTC 1 cut(s) 2776
BspT107I GGYRCC 6 cut(s) 302, 812, 1673, 3713, 5043, 5258
BspTNI GGTCTC 2 cut(s) 124, 1094
BsrBI CCGCTC 1 cut(s) 1780
BsrDI GCAATG 5 cut(s) 35, 1104, 1593, 1880, 4950
BsrFI RCCGGY 2 cut(s) 2146, 4501
BssAI RCCGGY 2 cut(s) 2146, 4501
BssNAI GTATAC 3 cut(s) 2417, 5567, 6019
BssNI GRCGYC 2 cut(s) 813, 3057
BssSI CACGAG 1 cut(s) 933
Bst1107I GTATAC 3 cut(s) 2417, 5567, 6019
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 6 cut(s) 518, 549, 1071, 1272, 2009, 2162
BstACI GRCGYC 2 cut(s) 813, 3057
BstAPI GCANNNNNTGC 2 cut(s) 502, 2725
BstDSI CCRYGG 5 cut(s) 112, 1939, 3561, 5391, 5606
BstENI CCTNNNNNAGG 3 cut(s) 521, 2285, 3031
BstFNI CGCG 3 cut(s) 3406, 3563, 6176
BstH2I RGCGCY 3 cut(s) 702, 816, 6433
BstHHI GCGC 6 cut(s) 701, 815, 2725, 3559, 6176, 6432
BstMAI GTCTC 7 cut(s) 124, 237, 1094, 2569, 3238, 4277, 4722
BstNI CCWGG 6 cut(s) 518, 549, 1071, 1272, 2009, 2162
BstNSI RCATGY 7 cut(s) 209, 1024, 2212, 2723, 4555, 6038, 6225
BstPAI GACNNNNGTC 2 cut(s) 435, 4492
BstSLI GKGCMC 5 cut(s) 548, 1534, 1790, 3105, 5340
BstUI CGCG 3 cut(s) 3406, 3563, 6176
BstV2I GAAGAC 3 cut(s) 51, 3453, 4646
BstX2I RGATCY 7 cut(s) 157, 1149, 1568, 2534, 2605, 4891, 5855
BstXI CCANNNNNNTGG 3 cut(s) 299, 1087, 4446
BstYI RGATCY 7 cut(s) 157, 1149, 1568, 2534, 2605, 4891, 5855
BstZ17I GTATAC 3 cut(s) 2417, 5567, 6019
Bsu15I ATCGAT 1 cut(s) 5836
Bsu36I CCTNAGG 3 cut(s) 4842, 5181, 5868
BsuTUI ATCGAT 1 cut(s) 5836
BtgI CCRYGG 5 cut(s) 112, 1939, 3561, 5391, 5606
BtgZI GCGATG 1 cut(s) 152
BtrI CACGTC 1 cut(s) 3400
BtsI GCAGTG 1 cut(s) 5273
BveI ACCTGC 2 cut(s) 2174, 5543
CaiI CAGNNNCTG 5 cut(s) 830, 1199, 2810, 3150, 5945
CciI TCATGA 1 cut(s) 3874
CfoI GCGC 6 cut(s) 701, 815, 2725, 3559, 6176, 6432
Cfr10I RCCGGY 2 cut(s) 2146, 4501
Cfr42I CCGCGG 1 cut(s) 3564
Cfr9I CCCGGG 1 cut(s) 6340
ClaI ATCGAT 1 cut(s) 5836
CseI GACGC 1 cut(s) 3412
CspAI ACCGGT 1 cut(s) 2146
CspCI CAANNNNNGTGG 4 cut(s) 1764, 1799, 2086, 2121
DinI GGCGCC 1 cut(s) 814
DraI TTTAAA 3 cut(s) 3774, 4053, 4903
DraIII CACNNNGTG 1 cut(s) 3100
EaeI YGGCCR 1 cut(s) 519
Eco24I GRGCYC 3 cut(s) 548, 3867, 5340
Eco31I GGTCTC 2 cut(s) 124, 1094
Eco32I GATATC 3 cut(s) 1239, 2706, 6288
Eco47I GGWCC 3 cut(s) 1772, 1894, 3412
Eco47III AGCGCT 1 cut(s) 700
Eco81I CCTNAGG 3 cut(s) 4842, 5181, 5868
Eco88I CYCGRG 5 cut(s) 323, 580, 3984, 4225, 6340
EcoNI CCTNNNNNAGG 3 cut(s) 521, 2285, 3031
EcoO109I RGGNCCY 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 2017
EcoRII CCWGG 6 cut(s) 516, 547, 1069, 1270, 2007, 2160
EcoRV GATATC 3 cut(s) 1239, 2706, 6288
EcoT22I ATGCAT 2 cut(s) 1954, 2983
EcoT38I GRGCYC 3 cut(s) 548, 3867, 5340
EgeI GGCGCC 1 cut(s) 814
EheI GGCGCC 1 cut(s) 814
FalI AAGNNNNNCTT 2 cut(s) 4145, 4177
FaqI GGGAC 8 cut(s) 93, 423, 1187, 3044, 3505, 3951, 5498, 6344
FauI CCCGC 1 cut(s) 3568
FauNDI CATATG 5 cut(s) 1470, 4619, 4630, 5430, 6358
FbaI TGATCA 2 cut(s) 1879, 2497
FblI GTMKAC 4 cut(s) 2416, 2505, 5566, 6018
FriOI GRGCYC 3 cut(s) 548, 3867, 5340
GlaI GCGC 6 cut(s) 700, 814, 2724, 3558, 6175, 6431
GsaI CCCAGC 2 cut(s) 1911, 3860
GsuI CTGGAG 4 cut(s) 1293, 3112, 4746, 5774
HaeII RGCGCY 3 cut(s) 702, 816, 6433
HgaI GACGC 1 cut(s) 3412
HhaI GCGC 6 cut(s) 701, 815, 2725, 3559, 6176, 6432
Hin1I GRCGYC 2 cut(s) 813, 3057
Hin6I GCGC 6 cut(s) 699, 813, 2723, 3557, 6174, 6430
HinP1I GCGC 6 cut(s) 699, 813, 2723, 3557, 6174, 6430
HincII GTYRAC 9 cut(s) 1066, 1506, 1721, 2941, 3589, 5476, 5656, 5734, 6250
HindII GTYRAC 9 cut(s) 1066, 1506, 1721, 2941, 3589, 5476, 5656, 5734, 6250
HindIII AAGCTT 3 cut(s) 3184, 4477, 6158
HpaI GTTAAC 4 cut(s) 1066, 2941, 3589, 6250
HphI GGTGA 6 cut(s) 855, 1260, 2369, 3021, 4472, 5594
Hpy99I CGWCG 2 cut(s) 58, 4919
HpyCH4IV ACGT 4 cut(s) 3057, 3399, 5806, 6115
HpySE526I ACGT 4 cut(s) 3057, 3399, 5806, 6115
Hsp92I GRCGYC 2 cut(s) 813, 3057
HspAI GCGC 6 cut(s) 699, 813, 2723, 3557, 6174, 6430
KasI GGCGCC 1 cut(s) 812
KpnI GGTACC 1 cut(s) 306
Ksp22I TGATCA 2 cut(s) 1879, 2497
KspAI GTTAAC 4 cut(s) 1066, 2941, 3589, 6250
KspI CCGCGG 1 cut(s) 3564
LguI GCTCTTC 1 cut(s) 2776
MaeII ACGT 4 cut(s) 3057, 3399, 5806, 6115
MaeIII GTNAC 8 cut(s) 536, 2890, 2951, 3092, 3400, 4247, 5789, 6410
MbiI CCGCTC 1 cut(s) 1780
MfeI CAATTG 1 cut(s) 5289
MflI RGATCY 7 cut(s) 157, 1149, 1568, 2534, 2605, 4891, 5855
MhlI GDGCHC 9 cut(s) 548, 1534, 1790, 3105, 3867, 5040, 5340, 5617, 6207
MlsI TGGCCA 1 cut(s) 521
MluI ACGCGT 1 cut(s) 3404
MluNI TGGCCA 1 cut(s) 521
Mly113I GGCGCC 1 cut(s) 813
MlyI GAGTC 6 cut(s) 5054, 5260, 5290, 5443, 5735, 5954
MmeI TCCRAC 5 cut(s) 386, 2475, 4740, 5189, 6076
Mox20I TGGCCA 1 cut(s) 521
Mph1103I ATGCAT 2 cut(s) 1954, 2983
MroXI GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5686
MscI TGGCCA 1 cut(s) 521
MslI CAYNNNNRTG 5 cut(s) 1085, 2658, 4170, 5390, 6381
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 4 cut(s) 1766, 2391, 3563, 4834
MunI CAATTG 1 cut(s) 5289
Mva1269I GAATGC 6 cut(s) 94, 1045, 1972, 3485, 3961, 5069
MvaI CCWGG 6 cut(s) 518, 549, 1071, 1272, 2009, 2162
MvnI CGCG 3 cut(s) 3406, 3563, 6176
NarI GGCGCC 1 cut(s) 813
NciI CCSGG 7 cut(s) 382, 1682, 3619, 3862, 4896, 6341, 6342
NcoI CCATGG 4 cut(s) 112, 1939, 5391, 5606
NdeI CATATG 5 cut(s) 1470, 4619, 4630, 5430, 6358
NmeAIII GCCGAG 1 cut(s) 3742
NmuCI GTSAC 4 cut(s) 536, 2951, 3092, 3400
NsiI ATGCAT 2 cut(s) 1954, 2983
NspI RCATGY 7 cut(s) 209, 1024, 2212, 2723, 4555, 6038, 6225
PaeI GCATGC 2 cut(s) 2723, 4555
PaeR7I CTCGAG 2 cut(s) 580, 3984
PagI TCATGA 1 cut(s) 3874
PaqCI CACCTGC 1 cut(s) 5543
PasI CCCWGGG 1 cut(s) 1070
PciI ACATGT 2 cut(s) 205, 2208
PciSI GCTCTTC 1 cut(s) 2776
PctI GAATGC 6 cut(s) 94, 1045, 1972, 3485, 3961, 5069
PdmI GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5686
PflMI CCANNNNNTGG 2 cut(s) 1345, 3038
PfoI TCCNGGA 1 cut(s) 1680
PinAI ACCGGT 1 cut(s) 2146
PleI GAGTC 6 cut(s) 5054, 5260, 5289, 5443, 5735, 5954
PluTI GGCGCC 1 cut(s) 816
PpsI GAGTC 6 cut(s) 5054, 5260, 5289, 5443, 5735, 5954
PscI ACATGT 2 cut(s) 205, 2208
PshAI GACNNNNGTC 2 cut(s) 435, 4492
PshBI ATTAAT 1 cut(s) 5898
Psp6I CCWGG 6 cut(s) 516, 547, 1069, 1270, 2007, 2160
PspFI CCCAGC 2 cut(s) 1907, 3856
PspGI CCWGG 6 cut(s) 516, 547, 1069, 1270, 2007, 2160
PspOMI GGGCCC 2 cut(s) 544, 5336
PspXI VCTCGAGB 1 cut(s) 580
PsrI GAACNNNNNNTAC 2 cut(s) 5490, 5522
PstI CTGCAG 7 cut(s) 507, 712, 826, 1159, 2178, 2869, 5524
PstNI CAGNNNCTG 5 cut(s) 830, 1199, 2810, 3150, 5945
PsuI RGATCY 7 cut(s) 157, 1149, 1568, 2534, 2605, 4891, 5855
PvuII CAGCTG 3 cut(s) 1766, 2391, 4834
RseI CAYNNNNRTG 5 cut(s) 1085, 2658, 4170, 5390, 6381
SacII CCGCGG 1 cut(s) 3564
SapI GCTCTTC 1 cut(s) 2776
SchI GAGTC 6 cut(s) 5054, 5260, 5290, 5443, 5735, 5954
SduI GDGCHC 9 cut(s) 548, 1534, 1790, 3105, 3867, 5040, 5340, 5617, 6207
SfoI GGCGCC 1 cut(s) 814
Sfr274I CTCGAG 2 cut(s) 580, 3984
Sfr303I CCGCGG 1 cut(s) 3564
SgrBI CCGCGG 1 cut(s) 3564
SinI GGWCC 3 cut(s) 1772, 1894, 3412
SlaI CTCGAG 2 cut(s) 580, 3984
SmaI CCCGGG 1 cut(s) 6342
SmiI ATTTAAAT 1 cut(s) 3774
SmiMI CAYNNNNRTG 5 cut(s) 1085, 2658, 4170, 5390, 6381
SmlI CTYRAG 5 cut(s) 580, 1433, 3984, 5031, 5268
SmoI CTYRAG 5 cut(s) 580, 1433, 3984, 5031, 5268
SpeI ACTAGT 1 cut(s) 953
SphI GCATGC 2 cut(s) 2723, 4555
SsiI CCGC 5 cut(s) 1018, 1778, 3561, 3563, 5278
SspDI GGCGCC 1 cut(s) 812
SspI AATATT 4 cut(s) 625, 739, 3919, 4417
SwaI ATTTAAAT 1 cut(s) 3774
TaiI ACGT 4 cut(s) 3060, 3402, 5809, 6118
TaqII GACCGA 1 cut(s) 3465
TatI WGTACW 1 cut(s) 6165
TseFI GTSAC 4 cut(s) 536, 2951, 3092, 3400
Tsp45I GTSAC 4 cut(s) 536, 2951, 3092, 3400
TspGWI ACGGA 1 cut(s) 4903
TspMI CCCGGG 1 cut(s) 6340
Van91I CCANNNNNTGG 2 cut(s) 1345, 3038
VneI GTGCAC 1 cut(s) 1530
VpaK11BI GGWCC 3 cut(s) 1772, 1894, 3412
VspI ATTAAT 1 cut(s) 5898
XagI CCTNNNNNAGG 3 cut(s) 521, 2285, 3031
XbaI TCTAGA 3 cut(s) 614, 683, 2794
XceI RCATGY 7 cut(s) 209, 1024, 2212, 2723, 4555, 6038, 6225
XcmI CCANNNNNNNNNTGG 3 cut(s) 1937, 2005, 3208
XhoI CTCGAG 2 cut(s) 580, 3984
XmaI CCCGGG 1 cut(s) 6340
XmiI GTMKAC 4 cut(s) 2416, 2505, 5566, 6018
XmnI GAANNNNTTC 4 cut(s) 738, 1588, 2446, 5686
ZraI GACGTC 1 cut(s) 3058
Zsp2I ATGCAT 2 cut(s) 1954, 2983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.