RchiOBHm_Chr1g0356281

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004222
Physical Location & Seq
Reverse (-)
48794054 .. 48795220
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58167

Sequence Viewer

Length: 582 bp
ATGAGAGCCGAGAAGCTTCCTTTCGTCCTCCTCGCGGTCTTCACCATCGGTCCACGCGCCAACGACATGGAGGCCGTCCAGAAGTACGCCAAGCTCATTTCCAACCACGACAAGAACTCCAACCATGTCAAGGAGCTCGTCCAGACCATCATCGAGGGCGATACATGTGTGCTCGCAGCCTCGATGACGATGAAGGAGGTCTTCAAAGGGACCAAAGAATTCAAGAAGGAGGTGTTTGAGAACGTTCAGCTGGAGTTGGATCAGTTGTTGAGTATGTTGGAGAGATTGTGGGGCGATCGACGTGTTGCTGATAAAAGGAAAAATGAATATCAATTTGGAAAAAAGCTTCAGTACAAGAGCGCATGCTACTTTTTCAGGATAGACAAAGAGCACATCATTGATGCTACATGCAAAGGAGGGATTGCTCGATTTGTTAACCATTCCTGCTCGGTTGCATTTCTTGCAGAGAGGGACATTTTCCCGGGAGAAGAGATAACATATGACCACCACTTTAACCATGAGGATGAAGGTAAGAAGATTCCATATGTTTTTGTATCTCAAAGAATTGCAGGTGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

193

Amino Acids

22.25

Weight (kDa)

7.69

Isoelectric Point (pI)

23.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 99 - 169 1.1e-07 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
AccII CGCG 2 cut(s) 35, 57
AciI CCGC 1 cut(s) 35
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 2 cut(s) 86, 353
AfiI CCNNNNNNNGG 2 cut(s) 34, 130
AflIII ACRYGT 2 cut(s) 164, 301
AgsI TTSAA 2 cut(s) 205, 223
AjiI CACGTC 1 cut(s) 302
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 5 cut(s) 16, 94, 136, 250, 346
AluI AGCT 5 cut(s) 16, 94, 136, 250, 346
Alw21I GWGCWC 3 cut(s) 138, 174, 393
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 2 cut(s) 59, 362
AspS9I GGNCC 2 cut(s) 50, 210
AsuC2I CCSGG 2 cut(s) 482, 483
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 481
AvaII GGWCC 2 cut(s) 50, 210
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 2 cut(s) 31, 193
Bbv12I GWGCWC 3 cut(s) 138, 174, 393
BbvI GCAGC 1 cut(s) 188
BccI CCATC 2 cut(s) 53, 155
BceAI ACGGC 1 cut(s) 59
BcnI CCSGG 2 cut(s) 482, 483
BfuAI ACCTGC 1 cut(s) 560
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
Bme1390I CCNGG 2 cut(s) 482, 483
Bme18I GGWCC 2 cut(s) 50, 210
BmeT110I CYCGRG 1 cut(s) 481
BmgBI CACGTC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 50, 210
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 482, 483
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 2 cut(s) 31, 193
BpmI CTGGAG 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 482, 483
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 272, 302
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 130
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 2 cut(s) 34, 130
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 2 cut(s) 35, 57
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 3 cut(s) 138, 174, 393
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 2 cut(s) 223, 485
BslI CCNNNNNNNGG 2 cut(s) 34, 130
BsmFI GGGAC 2 cut(s) 223, 485
BsnI GGCC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 138, 174, 393
Bsp143I GATC 2 cut(s) 259, 295
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 74
BspFNI CGCG 2 cut(s) 35, 57
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 259, 295
Bst6I CTCTTC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 2 cut(s) 174, 364
BstF5I GGATG 1 cut(s) 529
BstFNI CGCG 2 cut(s) 35, 57
BstHHI GCGC 2 cut(s) 59, 362
BstKTI GATC 2 cut(s) 262, 298
BstMBI GATC 2 cut(s) 259, 295
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNSI RCATGY 3 cut(s) 168, 366, 411
BstSCI CCNGG 2 cut(s) 480, 481
BstUI CGCG 2 cut(s) 35, 57
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 2 cut(s) 31, 193
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 1 cut(s) 74
BtrI CACGTC 1 cut(s) 302
BtsCI GGATG 1 cut(s) 529
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 2 cut(s) 174, 364
CfoI GCGC 2 cut(s) 59, 362
Cfr13I GGNCC 2 cut(s) 50, 210
Cfr9I CCCGGG 1 cut(s) 481
Csp6I GTAC 2 cut(s) 85, 352
CviAII CATG 6 cut(s) 67, 125, 165, 363, 408, 518
CviJI RGCY 8 cut(s) 8, 16, 74, 94, 136, 179, 250, 346
CviKI_1 RGCY 8 cut(s) 8, 16, 74, 94, 136, 179, 250, 346
CviQI GTAC 2 cut(s) 85, 352
DpnI GATC 2 cut(s) 261, 297
DpnII GATC 2 cut(s) 259, 295
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 50, 210
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 481
EcoICRI GAGCTC 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 138
FaeI CATG 6 cut(s) 70, 128, 168, 366, 411, 521
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FaqI GGGAC 2 cut(s) 223, 485
FatI CATG 6 cut(s) 66, 124, 164, 362, 407, 517
FauNDI CATATG 2 cut(s) 499, 544
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 536
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 177
GlaI GCGC 2 cut(s) 58, 361
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 482
HhaI GCGC 2 cut(s) 59, 362
Hin1II CATG 6 cut(s) 70, 128, 168, 366, 411, 521
Hin6I GCGC 2 cut(s) 57, 360
HinP1I GCGC 2 cut(s) 57, 360
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HindIII AAGCTT 2 cut(s) 14, 344
HinfI GANTC 1 cut(s) 538
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 1 cut(s) 482
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 53, 436
Hpy188III TCNNGA 4 cut(s) 79, 142, 223, 376
Hpy8I GTNNAC 2 cut(s) 53, 436
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 3 cut(s) 187, 220, 521
HpyCH4IV ACGT 2 cut(s) 243, 301
HpyCH4V TGCA 4 cut(s) 411, 455, 464, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpySE526I ACGT 2 cut(s) 243, 301
Hsp92II CATG 6 cut(s) 70, 128, 168, 366, 411, 521
HspAI GCGC 2 cut(s) 57, 360
KspAI GTTAAC 1 cut(s) 436
Kzo9I GATC 2 cut(s) 259, 295
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 7 cut(s) 92, 155, 236, 361, 457, 495, 555
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 1 cut(s) 391
MaeII ACGT 2 cut(s) 243, 301
MalI GATC 2 cut(s) 261, 297
MboI GATC 2 cut(s) 259, 295
MboII GAAGA 4 cut(s) 31, 193, 500, 547
MhlI GDGCHC 3 cut(s) 138, 174, 393
MluCI AATT 3 cut(s) 218, 332, 564
MmeI TCCRAC 4 cut(s) 126, 144, 237, 258
MseI TTAA 2 cut(s) 435, 513
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 250
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 482, 483
MvnI CGCG 2 cut(s) 35, 57
MwoI GCNNNNNNNGC 1 cut(s) 461
NciI CCSGG 2 cut(s) 482, 483
NdeI CATATG 2 cut(s) 499, 544
NdeII GATC 2 cut(s) 259, 295
NlaIII CATG 6 cut(s) 70, 128, 168, 366, 411, 521
NlaIV GGNNCC 1 cut(s) 211
NmeAIII GCCGAG 1 cut(s) 34
NspI RCATGY 3 cut(s) 168, 366, 411
PaeI GCATGC 1 cut(s) 366
PaqCI CACCTGC 1 cut(s) 560
PciI ACATGT 1 cut(s) 164
PfeI GAWTC 1 cut(s) 538
PkrI GCNGC 1 cut(s) 178
Ple19I CGATCG 1 cut(s) 298
PscI ACATGT 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 138
Psp1406I AACGTT 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 50, 210
PvuI CGATCG 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 250
RsaI GTAC 2 cut(s) 86, 353
RsaNI GTAC 2 cut(s) 85, 352
RseI CAYNNNNRTG 1 cut(s) 522
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 2 cut(s) 435, 513
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 259, 295
Sau96I GGNCC 2 cut(s) 50, 210
ScrFI CCNGG 2 cut(s) 482, 483
SduI GDGCHC 3 cut(s) 138, 174, 393
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 2 cut(s) 50, 210
SmaI CCCGGG 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 522
SphI GCATGC 1 cut(s) 366
Sse9I AATT 3 cut(s) 218, 332, 564
SsiI CCGC 1 cut(s) 35
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 2 cut(s) 480, 481
TaiI ACGT 2 cut(s) 246, 304
TaqI TCGA 4 cut(s) 153, 182, 298, 427
TaqII GACCGA 1 cut(s) 38
TasI AATT 3 cut(s) 218, 332, 564
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 2 cut(s) 435, 513
Tru9I TTAA 2 cut(s) 435, 513
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 206, 339, 540
TspMI CCCGGG 1 cut(s) 481
VpaK11BI GGWCC 2 cut(s) 50, 210
XapI RAATTY 1 cut(s) 218
XceI RCATGY 3 cut(s) 168, 366, 411
XmaI CCCGGG 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.