Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000793

Physical Location & Seq

Genomic Coordinates Reverse (-)

41739392 .. 41743108

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0270500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTCCAATTTCTGGACTTCGTCTCACTACAAACAGCTTTCGGACCAGGAAGATGTGGATGTTGTGCTCCCACTTGATAAAGAGAAGGGCATCACTCTTGAAGACTTCAAGCTCATCAAGATGCATATGGCCAATTATATATCCAAAGTGGCACAACATGTGAAAGTGAGACAAAGGGTTGTAGCTACTGCAGTTACATATATGAGGCGTGTGTATACCAGGAAGACTATGTCTGAGTATGATCCACGCCTTGTGGCTCCAACCTGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTTCAGGCTAAACTTCTTGTATTTTACATCAGGAAATTATATTCTGATGAAAAGTATAGGTGCGAGATCAAAGACATACTTGAAATGGAGATGAAGATTTTAGAAGCTCTCAACTATTATCTAGTTATATACCATCCTTACCGTTCATTGTCTCAGTTGCTTCAGGATACAGGCTTGAATGATATAACTATGACACAAGTAACCTGGGGAATTGTGAATGACACATACAAGATGGACCTTGCACTTGTACATCCTCCACACCTTATTGCTCTAGCTTGCATATACATTGCCAGCGTACTCAGAGAGAAAGACACCACGGCATGGTTTGAGGAGCTCCGTGTGGATATGAATGTGGTGAAAAACATATCGATGGAGATATTAGATTTCTACGAAAACCACAGAATGATCACGGAAGAGCGGTGTAATGCTGCTCTCAACAAGCTACCCTCCAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009877 GO:0016020 GO:0016324 GO:0022622 GO:0032501 GO:0032502 GO:0044403 GO:0044419 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048364 GO:0048731 GO:0048856 GO:0051704 GO:0071944 GO:0098590 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Band_7

Protein Analysis

253

Amino Acids

29.64

Weight (kDa)

6.66

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	43 - 142	1.2e-19	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25250 AT5G25260 AT5G64870
fragaria_vesca	FvH4_2g28360 FvH4_2g28361 FvH4_2g28363 FvH4_6g10190
malus_domestica	MD08G1153100.v1.1 MD15G1129900.v1.1 MD15G1130000.v1.1 MD15G1130100.v1.1
prunus_persica	Prupe.1G485400_v2.0.a1 Prupe.1G485500_v2.0.a1 Prupe.1G485600_v2.0.a1 Prupe.1G485600_v2.0.a1
pyrus_communis	pycom08g13240
rosa_chinensis	RchiOBHm_Chr3g0460921 RchiOBHm_Chr4g0425621 RchiOBHm_Chr4g0425631 RchiOBHm_Chr6g0297281 RchiOBHm_Chr6g0297301 RchiOBHm_Chr6g0297311
rosa_laevigata	RLG00000007352 RLG00000011612 RLG00000011613 RLG00000011615 RLG00000024965
rosa_multiflora	Rmu_co8465209.1_g000001 Rmu_sc0003958.1_g000017 Rmu_sc0004535.1_g000003 Rmu_sc0004535.1_g000007 Rmu_sc0004535.1_g000008 Rmu_sc0013249.1_g000009 Rmu_sc0021377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00306830 Rroxscaffold_6G00419030 Rroxscaffold_7G00170670 Rroxscaffold_7G00170690
rosa_rugosa	Rorug03G0047100 Rorug04G0204200 Rorug04G0204400 Rorug06G0270200 Rorug06G0270500 Rorug06G0270600
rosa_samantha	Rh3AG104500 Rh3BG108200 Rh3CG109900 Rh3DG110000 Rh4AG261700 Rh4BG267600 Rh4CG278500 Rh4CG278700 Rh4DG263500 Rh6AG381700 Rh6AG381900 Rh6AG382000 Rh6BG389700 Rh6BG389900 Rh6BG390000 Rh6CG394900 Rh6CG395100 Rh6CG395200 Rh6DG381600 Rh6DG381900 Rh6DG382000
rosa_wichuraiana	Rw3G008900 Rw4G022620 Rw6G033250 Rw6G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	15, 624
AccBSI	CCGCTC	1 cut(s)	721
AccI	GTMKAC	1 cut(s)	218
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	3 cut(s)	275, 552, 600
AfiI	CCNNNNNNNGG	2 cut(s)	15, 624
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	104, 112, 386, 481
AjnI	CCWGG	4 cut(s)	48, 221, 276, 506
AluBI	AGCT	7 cut(s)	40, 115, 188, 410, 578, 637, 745
AluI	AGCT	7 cut(s)	40, 115, 188, 410, 578, 637, 745
Alw21I	GWGCWC	2 cut(s)	72, 639
Alw26I	GTCTC	3 cut(s)	30, 166, 459
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	731
AspS9I	GGNCC	2 cut(s)	46, 538
AsuHPI	GGTGA	1 cut(s)	670
AvaII	GGWCC	2 cut(s)	46, 538
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	111, 233
Bbv12I	GWGCWC	2 cut(s)	72, 639
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	3 cut(s)	444, 529, 667
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	4 cut(s)	50, 223, 278, 508
BciVI	GTATCC	1 cut(s)	463
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	30, 166, 459
BfaI	CTAG	2 cut(s)	425, 575
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
Bme1390I	CCNGG	4 cut(s)	50, 223, 278, 508
Bme18I	GGWCC	2 cut(s)	46, 538
BmgT120I	GGNCC	2 cut(s)	46, 538
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	4 cut(s)	50, 223, 278, 508
BmsI	GCATC	3 cut(s)	102, 114, 290
BpiI	GAAGAC	2 cut(s)	111, 233
BpmI	CTGGAG	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	671
BsaJI	CCNNGG	2 cut(s)	507, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 624
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	4 cut(s)	50, 223, 278, 508
BseCI	ATCGAT	1 cut(s)	671
BseDI	CCNNGG	2 cut(s)	507, 618
BseGI	GGATG	3 cut(s)	67, 436, 553
BseLI	CCNNNNNNNGG	2 cut(s)	15, 624
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	228, 470, 616
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	718
BshFI	GGCC	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	671
BsiHKAI	GWGCWC	2 cut(s)	72, 639
BslI	CCNNNNNNNGG	2 cut(s)	15, 624
BsmAI	GTCTC	3 cut(s)	30, 166, 459
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	72, 639
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	244, 369, 708
BspACI	CCGC	1 cut(s)	721
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	3 cut(s)	229, 469, 615
BspDI	ATCGAT	1 cut(s)	671
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	711
BsrBI	CCGCTC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	588
BsrGI	TGTACA	1 cut(s)	550
BssECI	CCNNGG	2 cut(s)	507, 618
BssMI	GATC	3 cut(s)	244, 369, 708
BssNAI	GTATAC	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	219
Bst2UI	CCWGG	4 cut(s)	50, 223, 278, 508
Bst4CI	ACNGT	2 cut(s)	304, 446
Bst6I	CTCTTC	1 cut(s)	711
BstAUI	TGTACA	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	580, 595
BstDEI	CTNAG	3 cut(s)	237, 456, 602
BstDSI	CCRYGG	1 cut(s)	618
BstF5I	GGATG	3 cut(s)	67, 436, 553
BstKTI	GATC	3 cut(s)	247, 372, 711
BstMAI	GTCTC	3 cut(s)	30, 166, 459
BstMBI	GATC	3 cut(s)	244, 369, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	4 cut(s)	50, 223, 278, 508
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	4 cut(s)	48, 221, 276, 506
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	718
BstV2I	GAAGAC	2 cut(s)	111, 233
BstZ17I	GTATAC	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	671
BtgI	CCRYGG	1 cut(s)	618
BtsCI	GGATG	3 cut(s)	67, 436, 553
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	580, 595
Cfr13I	GGNCC	2 cut(s)	46, 538
ClaI	ATCGAT	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	274, 551, 599
CviAII	CATG	2 cut(s)	161, 624
CviQI	GTAC	3 cut(s)	274, 551, 599
DdeI	CTNAG	3 cut(s)	237, 456, 602
DpnI	GATC	3 cut(s)	246, 371, 710
DpnII	GATC	3 cut(s)	244, 369, 708
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	46, 538
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	4 cut(s)	48, 221, 276, 506
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	2 cut(s)	164, 627
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	2 cut(s)	160, 623
FauNDI	CATATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	708
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	3 cut(s)	74, 423, 540
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	732
FspBI	CTAG	2 cut(s)	425, 575
GluI	GCNGC	1 cut(s)	732
GsuI	CTGGAG	1 cut(s)	736
HaeIII	GGCC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	164, 627
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	4 cut(s)	46, 238, 349, 605
Hpy188III	TCNNGA	6 cut(s)	16, 101, 121, 334, 467, 753
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	304, 446
HpyCH4V	TGCA	4 cut(s)	127, 194, 545, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	237, 456, 602
Hsp92II	CATG	2 cut(s)	164, 627
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	3 cut(s)	244, 369, 708
LguI	GCTCTTC	1 cut(s)	711
LmnI	GCTCC	4 cut(s)	75, 265, 634, 642
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	3 cut(s)	102, 114, 290
MaeI	CTAG	2 cut(s)	425, 575
MaeIII	GTNAC	2 cut(s)	196, 502
MalI	GATC	3 cut(s)	246, 371, 710
MbiI	CCGCTC	1 cut(s)	721
MboI	GATC	3 cut(s)	244, 369, 708
MboII	GAAGA	6 cut(s)	65, 116, 238, 305, 409, 728
MhlI	GDGCHC	2 cut(s)	72, 639
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	4 cut(s)	10, 136, 338, 513
MluNI	TGGCCA	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	201, 567, 625, 760
Mox20I	TGGCCA	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	134
MslI	CAYNNNNRTG	2 cut(s)	122, 671
Msp20I	TGGCCA	1 cut(s)	134
MspR9I	CCNGG	4 cut(s)	50, 223, 278, 508
MvaI	CCWGG	4 cut(s)	50, 223, 278, 508
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	3 cut(s)	244, 369, 708
NlaIII	CATG	2 cut(s)	164, 627
NlaIV	GGNNCC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	1 cut(s)	164
PciI	ACATGT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	711
PflFI	GACNNNGTC	2 cut(s)	22, 232
PflMI	CCANNNNNTGG	2 cut(s)	15, 624
PkrI	GCNGC	1 cut(s)	733
PscI	ACATGT	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	4 cut(s)	48, 221, 276, 506
PspGI	CCWGG	4 cut(s)	48, 221, 276, 506
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	46, 538
PstI	CTGCAG	1 cut(s)	196
PsyI	GACNNNGTC	2 cut(s)	22, 232
RsaI	GTAC	3 cut(s)	275, 552, 600
RsaNI	GTAC	3 cut(s)	274, 551, 599
RseI	CAYNNNNRTG	2 cut(s)	122, 671
SacI	GAGCTC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	711
SatI	GCNGC	1 cut(s)	732
Sau3AI	GATC	3 cut(s)	244, 369, 708
Sau96I	GGNCC	2 cut(s)	46, 538
ScrFI	CCNGG	4 cut(s)	50, 223, 278, 508
SduI	GDGCHC	2 cut(s)	72, 639
SfaNI	GCATC	3 cut(s)	102, 114, 290
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	46, 538
SmiMI	CAYNNNNRTG	2 cut(s)	122, 671
Sse9I	AATT	4 cut(s)	10, 136, 338, 513
SsiI	CCGC	1 cut(s)	721
SspMI	CTAG	2 cut(s)	425, 575
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	4 cut(s)	48, 221, 276, 506
TaaI	ACNGT	2 cut(s)	304, 446
TaqI	TCGA	1 cut(s)	671
TasI	AATT	4 cut(s)	10, 136, 338, 513
TatI	WGTACW	1 cut(s)	550
TseI	GCWGC	1 cut(s)	731
TspDTI	ATGAA	4 cut(s)	366, 410, 438, 665
TspGWI	ACGGA	2 cut(s)	629, 728
Tth111I	GACNNNGTC	2 cut(s)	22, 232
Van91I	CCANNNNNTGG	2 cut(s)	15, 624
VpaK11BI	GGWCC	2 cut(s)	46, 538
XceI	RCATGY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	2 cut(s)	425, 575
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.