Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000793

Physical Location & Seq

Genomic Coordinates Reverse (-)

22303756 .. 22304243

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g28363.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGCGCCGAAAAGCTTCCTTTCGTCCTCCCCGCAGTCTTCACAGTCGGTCCACGCACCGAAGACATGGAGGCCCTTAACAGTTACGCCAAGCTCATTTCCAACCACGACAAGAACTCCACGCTCGTCCAGGGCATCATCGAGGGCGAGACACGTGTGCTCGCAGCCTCAATGACGATGGAGGAGGTCTTCAAAGGGACTGAAGAGTTCAAGAAGGAGGGTGTTTGTCTGTTTGAAAAGAAGATTCAGATGGATGCTGCCAACCAGGGCAAGGTTGACGTCGCCGAGGCCAAAATGAAGGGAGAGGTTGGCTCTAAGCTGAGGGACGGGCAGACATTGCAAAATGCTGCGAATACCGACTTGGAGACGAAGATCATTTCTACTCAGAGGCAAGGGGAGGGGAAGAAGGAGGAGATTAAGGTGAAGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006950 GO:0008150 GO:0009506 GO:0009628 GO:0009987 GO:0010324 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055044 GO:0061024 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098657 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Band_7

Protein Analysis

144

Amino Acids

15.72

Weight (kDa)

5.59

Isoelectric Point (pI)

26.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25250 AT5G25260 AT5G64870
fragaria_vesca	FvH4_2g28360 FvH4_2g28361 FvH4_2g28363 FvH4_6g10190
malus_domestica	MD08G1153100.v1.1 MD15G1129900.v1.1 MD15G1130000.v1.1 MD15G1130100.v1.1
prunus_persica	Prupe.1G485400_v2.0.a1 Prupe.1G485500_v2.0.a1 Prupe.1G485600_v2.0.a1 Prupe.1G485600_v2.0.a1
pyrus_communis	pycom08g13240
rosa_chinensis	RchiOBHm_Chr3g0460921 RchiOBHm_Chr4g0425621 RchiOBHm_Chr4g0425631 RchiOBHm_Chr6g0297281 RchiOBHm_Chr6g0297301 RchiOBHm_Chr6g0297311
rosa_laevigata	RLG00000007352 RLG00000011612 RLG00000011613 RLG00000011615 RLG00000024965
rosa_multiflora	Rmu_co8465209.1_g000001 Rmu_sc0003958.1_g000017 Rmu_sc0004535.1_g000003 Rmu_sc0004535.1_g000007 Rmu_sc0004535.1_g000008 Rmu_sc0013249.1_g000009 Rmu_sc0021377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00306830 Rroxscaffold_6G00419030 Rroxscaffold_7G00170670 Rroxscaffold_7G00170690
rosa_rugosa	Rorug03G0047100 Rorug04G0204200 Rorug04G0204400 Rorug06G0270200 Rorug06G0270500 Rorug06G0270600
rosa_samantha	Rh3AG104500 Rh3BG108200 Rh3CG109900 Rh3DG110000 Rh4AG261700 Rh4BG267600 Rh4CG278500 Rh4CG278700 Rh4DG263500 Rh6AG381700 Rh6AG381900 Rh6AG382000 Rh6BG389700 Rh6BG389900 Rh6BG390000 Rh6CG394900 Rh6CG395100 Rh6CG395200 Rh6DG381600 Rh6DG381900 Rh6DG382000
rosa_wichuraiana	Rw3G008900 Rw4G022620 Rw6G033250 Rw6G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	282
AciI	CCGC	1 cut(s)	33
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	2 cut(s)	152, 154
AgsI	TTSAA	3 cut(s)	193, 211, 236
AjnI	CCWGG	2 cut(s)	129, 264
AjuI	GAANNNNNNNTTGG	2 cut(s)	344, 376
AluBI	AGCT	3 cut(s)	16, 94, 319
AluI	AGCT	3 cut(s)	16, 94, 319
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	143, 359
AoxI	GGCC	2 cut(s)	72, 288
ApeKI	GCWGC	3 cut(s)	164, 257, 347
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	50, 73
AvaII	GGWCC	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	155
BbsI	GAAGAC	3 cut(s)	31, 69, 181
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	320
BbvI	GCAGC	3 cut(s)	176, 244, 334
BccI	CCATC	2 cut(s)	172, 244
BciT130I	CCWGG	2 cut(s)	131, 266
BcoDI	GTCTC	2 cut(s)	143, 359
BfoI	RGCGCY	1 cut(s)	9
BisI	GCNGC	3 cut(s)	165, 258, 348
BlsI	GCNGC	3 cut(s)	166, 259, 349
Bme1390I	CCNGG	2 cut(s)	131, 266
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 73
BmrFI	CCNGG	2 cut(s)	131, 266
BmsI	GCATC	2 cut(s)	144, 244
BpiI	GAAGAC	3 cut(s)	31, 69, 181
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
Bpu10I	CCTNAGC	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	3 cut(s)	130, 265, 285
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse3DI	GCAATG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	131, 266
BseDI	CCNNGG	3 cut(s)	130, 265, 285
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	311, 398
BseRI	GAGGAG	2 cut(s)	197, 425
BseXI	GCAGC	3 cut(s)	176, 244, 334
BshFI	GGCC	2 cut(s)	74, 290
BsiHKAI	GWGCWC	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	211, 338
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	143, 359
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	211, 338
BsnI	GGCC	2 cut(s)	74, 290
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	372
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	74, 290
BspCNI	CTCAG	2 cut(s)	312, 397
BsrDI	GCAATG	1 cut(s)	335
BssECI	CCNNGG	3 cut(s)	130, 265, 285
BssMI	GATC	1 cut(s)	372
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	131, 266
Bst4CI	ACNGT	2 cut(s)	46, 83
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	315, 320, 384
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	375
BstMAI	GTCTC	2 cut(s)	143, 359
BstMBI	GATC	1 cut(s)	372
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	2 cut(s)	131, 266
BstSCI	CCNGG	2 cut(s)	129, 264
BstV1I	GCAGC	3 cut(s)	176, 244, 334
BstV2I	GAAGAC	3 cut(s)	31, 69, 181
BsuRI	GGCC	2 cut(s)	74, 290
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	50, 73
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	7 cut(s)	16, 74, 94, 167, 290, 312, 319
CviKI_1	RGCY	7 cut(s)	16, 74, 94, 167, 290, 312, 319
DdeI	CTNAG	3 cut(s)	315, 320, 384
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	2 cut(s)	129, 264
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	1 cut(s)	70
FaiI	YATR	1 cut(s)	68
FaqI	GGGAC	2 cut(s)	211, 338
FatI	CATG	1 cut(s)	66
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	3 cut(s)	165, 258, 348
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	165, 258, 348
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	3 cut(s)	165, 258, 348
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	74, 290
HhaI	GCGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	53, 277
Hpy188I	TCNGA	2 cut(s)	249, 387
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	53, 277
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	208, 292, 400
HpyCH4III	ACNGT	2 cut(s)	46, 83
HpyCH4IV	ACGT	3 cut(s)	154, 279, 428
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	3 cut(s)	315, 320, 384
HpySE526I	ACGT	3 cut(s)	154, 279, 428
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	70
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	372
LpnPI	CCDG	4 cut(s)	116, 143, 251, 278
Lsp1109I	GCAGC	3 cut(s)	176, 244, 334
LweI	GCATC	2 cut(s)	144, 244
MaeII	ACGT	3 cut(s)	154, 279, 428
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	7 cut(s)	31, 74, 181, 215, 253, 382, 415
MhlI	GDGCHC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	78, 417
MspR9I	CCNGG	2 cut(s)	131, 266
MvaI	CCWGG	2 cut(s)	131, 266
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	1 cut(s)	70
NmeAIII	GCCGAG	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	166, 259, 349
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	129, 264
PspCI	CACGTG	1 cut(s)	155
PspGI	CCWGG	2 cut(s)	129, 264
PspPI	GGNCC	2 cut(s)	50, 73
SaqAI	TTAA	2 cut(s)	78, 417
SatI	GCNGC	3 cut(s)	165, 258, 348
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	2 cut(s)	50, 73
ScrFI	CCNGG	2 cut(s)	131, 266
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	2 cut(s)	144, 244
SinI	GGWCC	1 cut(s)	50
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	129, 264
TaaI	ACNGT	2 cut(s)	46, 83
TaiI	ACGT	3 cut(s)	157, 282, 431
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	78, 417
Tru9I	TTAA	2 cut(s)	78, 417
TseI	GCWGC	3 cut(s)	164, 257, 347
TspDTI	ATGAA	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	15
ZraI	GACGTC	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.