AT5G25250

Flotillin-like protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
8749680 .. 8751636
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25250.1

Sequence Viewer

Length: 1413 bp
ATGTTCAAAGTTGCAAGAGCGTCACAGTATTTGGCGATCACCGGTGCTGGTATCGAAGACATCAAGCTTTCCAAGAAGTCATGGGTGTTTCCATGGCAATCTTGCACCGTCTTCGACGTTTCTCCGGTGAACTATACTTTCAAAGTCCAAGCCATGAGCGCAGAGAAGCTTCCTTTTGTTCTTCCCGCTGTTTTTACGATTGGTCCTCGCGTTGATGACGATGACGCGCTGATTTTGTATGCTAGGTTGATTTCTCCTCATGATAAAGATTCAAATCATGTCCATGAGCTTGTTGAAGGTGTTATTGAAGGAGAGACTCGTGTTCTTGCTGCTTCCATGACTATGGAAGAGATCTTTAAAGGGACAAAGGAGTTTAAGAAGGAGGTGTTTGATAAGGTTCAACTAGAATTAAACCAGTTTGGTCTTGTGATATACAATGCCAATGTGAAGCAGCTCGTTGATGTGCCTGGACATGAATACTTCTCTTACTTGGGTCAGAAGACTCAAATGGAAGCAGCAAATCAGGCTAGGATCGATGTCTCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACTGGTCTTACTCTCCAGAACGCAGCCAAAATTGACGCTGAGTCAAAGATCATATCGATGCAGAGGCAAGGAGAAGGAACAAAAGAAGAAATCAAAGTGAGGACTGAGGTTAAAGTGTTTGAGAATCAGAAGGAGGCTGATGTAGCTAAGGCCAATGCCGAGCTTGCGATGAAAAAAGCTGCTTGGACTAAGGATGCTCAGGTGGCTGAGGTTGAAGCAACCAAGGCCGTGGCTTTGAGAGAAGCTGAGCTTCAGACTCAGGTCGAGAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAGGCTGAGTTCCTTAGCAAAGCTAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAACTATACAACAAGCAGAAACAAGCAGAGGCGGTTCTATACGAGAAACAAAAGCAAGCCGAGGCACAGAAAGCGCAAGCGGATGCGGCTTTCTACTCAAAGCAGAAAGAAGCAGAGGGACTTGTTGCCTTAGCTAGTGCGCAAGGGACTTATCTAAGAACCCTCTTAGACGCTGTTCAGAATGACTATTCTTGTCTTAGAGACTTCTTGATGATTAACAATGGTATTTATCAAGAGATCGCTAAGACTAATGCGATGGCGGTTAGAGACTTGCAGCCCAAGATTAGTGTTTGGAACCATGGTGGAGAACAGGGTGGTGGTAGTGGGAATGCTATGAAGGATATAGCTGGACTTTACAAGATGTTGCCTCCGGTTCTTGATACGGTTTATGAGCAGACTGGGATGCAGCCACCTGCTTGGATCGGTACTCTACGTGGTGCGGAACCGAAGCAAGTGACTCGCAGCTAA

Protein Analysis

470

Amino Acids

52.31

Weight (kDa)

5.83

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 18 - 184 2.1e-26 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1366
Acc16I TGCGCA 1 cut(s) 1086
Acc36I ACCTGC 1 cut(s) 1366
AccB1I GGYRCC 1 cut(s) 569
AccII CGCG 2 cut(s) 210, 227
AciI CCGC 6 cut(s) 186, 977, 1025, 1031, 1205, 1385
AclWI GGATC 2 cut(s) 539, 1373
AcuI CTGAAG 1 cut(s) 818
AfaI GTAC 1 cut(s) 1372
AfiI CCNNNNNNNGG 1 cut(s) 579
AgeI ACCGGT 1 cut(s) 41
AgsI TTSAA 8 cut(s) 7, 142, 273, 296, 308, 401, 797, 932
AhdI GACNNNNNGTC 1 cut(s) 622
AjnI CCWGG 1 cut(s) 466
Alw26I GTCTC 4 cut(s) 308, 544, 1140, 1206
AlwI GGATC 2 cut(s) 539, 1373
AoxI GGCC 3 cut(s) 546, 732, 807
ApeKI GCWGC 8 cut(s) 329, 451, 515, 605, 761, 1219, 1351, 1407
AsiGI ACCGGT 1 cut(s) 41
AspLEI GCGC 4 cut(s) 161, 229, 1021, 1087
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 31, 139
AvaII GGWCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 569
BauI CACGAG 1 cut(s) 318
BbsI GAAGAC 3 cut(s) 63, 103, 506
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 7 cut(s) 316, 463, 527, 617, 748, 1231, 1363
BccI CCATC 1 cut(s) 1195
BceAI ACGGC 1 cut(s) 794
BcgI CGANNNNNNTGC 3 cut(s) 94, 128, 1385
BciT130I CCWGG 1 cut(s) 468
BcoDI GTCTC 4 cut(s) 308, 544, 1140, 1206
BfaI CTAG 5 cut(s) 243, 404, 528, 906, 1080
BfuAI ACCTGC 1 cut(s) 1366
BglII AGATCT 1 cut(s) 351
BisI GCNGC 9 cut(s) 330, 452, 516, 606, 762, 1032, 1220, 1352, 1408
BlpI GCTNAGC 1 cut(s) 828
BlsI GCNGC 9 cut(s) 331, 453, 517, 607, 763, 1033, 1221, 1353, 1409
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 203
BmeRI GACNNNNNGTC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 3 cut(s) 571, 1241, 1389
BmrFI CCNGG 1 cut(s) 468
BmrI ACTGGG 1 cut(s) 1353
BmsI GCATC 4 cut(s) 630, 766, 1018, 1338
BmuI ACTGGG 1 cut(s) 1353
BoxI GACNNNNGTC 1 cut(s) 842
BpiI GAAGAC 3 cut(s) 63, 103, 506
BpmI CTGGAG 1 cut(s) 581
Bpu10I CCTNAGC 5 cut(s) 729, 780, 789, 896, 1075
Bpu1102I GCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 866
Bsa29I ATCGAT 2 cut(s) 534, 638
BsaAI YACGTR 1 cut(s) 1379
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 7 cut(s) 92, 573, 804, 810, 924, 1005, 1243
BsaWI WCCGGW 3 cut(s) 41, 124, 1315
Bsc4I CCNNNNNNNGG 1 cut(s) 579
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 3 cut(s) 415, 589, 1348
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 468
BseCI ATCGAT 2 cut(s) 534, 638
BseDI CCNNGG 7 cut(s) 92, 573, 804, 810, 924, 1005, 1243
BseGI GGATG 3 cut(s) 781, 1033, 1353
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 579
BseMII CTCAG 8 cut(s) 534, 612, 678, 780, 794, 819, 854, 879
BseNI ACTGG 3 cut(s) 415, 589, 1348
BseRI GAGGAG 1 cut(s) 246
BseXI GCAGC 7 cut(s) 316, 463, 527, 617, 748, 1231, 1363
Bsh1236I CGCG 2 cut(s) 210, 227
BshFI GGCC 3 cut(s) 548, 734, 809
BshNI GGYRCC 1 cut(s) 569
BshTI ACCGGT 1 cut(s) 41
BshVI ATCGAT 2 cut(s) 534, 638
BsiSI CCGG 3 cut(s) 42, 125, 1316
BslFI GGGAC 3 cut(s) 376, 1077, 1105
BslI CCNNNNNNNGG 1 cut(s) 579
BsmAI GTCTC 4 cut(s) 308, 544, 1140, 1206
BsmFI GGGAC 3 cut(s) 376, 1077, 1105
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 3 cut(s) 548, 734, 809
Bsp143I GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
Bsp1720I GCTNAGC 1 cut(s) 828
Bsp19I CCATGG 2 cut(s) 92, 1243
BspACI CCGC 6 cut(s) 186, 977, 1025, 1031, 1205, 1385
BspANI GGCC 3 cut(s) 548, 734, 809
BspCNI CTCAG 8 cut(s) 535, 613, 679, 781, 793, 820, 853, 880
BspDI ATCGAT 2 cut(s) 534, 638
BspFNI CGCG 2 cut(s) 210, 227
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 571, 1241, 1389
BspMI ACCTGC 1 cut(s) 1366
BspPI GGATC 2 cut(s) 539, 1373
BspT107I GGYRCC 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 3 cut(s) 415, 589, 1348
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 7 cut(s) 92, 573, 804, 810, 924, 1005, 1243
BssMI GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 5 cut(s) 92, 573, 804, 924, 1243
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 27, 109, 1330
Bst6I CTCTTC 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 1379
BstC8I GCNNGC 3 cut(s) 747, 1002, 1023
BstDSI CCRYGG 3 cut(s) 92, 810, 1243
BstF5I GGATG 3 cut(s) 781, 1033, 1353
BstFNI CGCG 2 cut(s) 210, 227
BstHHI GCGC 4 cut(s) 161, 229, 1021, 1087
BstKTI GATC 7 cut(s) 39, 354, 534, 567, 633, 1185, 1368
BstMAI GTCTC 4 cut(s) 308, 544, 1140, 1206
BstMBI GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
BstMWI GCNNNNNNNGC 8 cut(s) 158, 524, 725, 746, 785, 806, 1016, 1031
BstNI CCWGG 1 cut(s) 468
BstPAI GACNNNNGTC 1 cut(s) 842
BstSCI CCNGG 1 cut(s) 466
BstUI CGCG 2 cut(s) 210, 227
BstV1I GCAGC 7 cut(s) 316, 463, 527, 617, 748, 1231, 1363
BstV2I GAAGAC 3 cut(s) 63, 103, 506
BstX2I RGATCY 1 cut(s) 351
BstXI CCANNNNNNTGG 3 cut(s) 343, 811, 1362
BstYI RGATCY 1 cut(s) 351
Bsu15I ATCGAT 2 cut(s) 534, 638
BsuRI GGCC 3 cut(s) 548, 734, 809
BsuTUI ATCGAT 2 cut(s) 534, 638
BtgI CCRYGG 3 cut(s) 92, 810, 1243
BtgZI GCGATG 2 cut(s) 764, 1214
BtsCI GGATG 3 cut(s) 781, 1033, 1353
BveI ACCTGC 1 cut(s) 1366
Cac8I GCNNGC 3 cut(s) 747, 1002, 1023
CciI TCATGA 1 cut(s) 259
CfoI GCGC 4 cut(s) 161, 229, 1021, 1087
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 203
ClaI ATCGAT 2 cut(s) 534, 638
CseI GACGC 4 cut(s) 9, 233, 626, 1124
Csp6I GTAC 1 cut(s) 1371
CspAI ACCGGT 1 cut(s) 41
CviAII CATG 9 cut(s) 81, 93, 154, 260, 278, 284, 337, 473, 1244
CviQI GTAC 1 cut(s) 1371
DpnI GATC 7 cut(s) 38, 353, 533, 566, 632, 1184, 1367
DpnII GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
DraI TTTAAA 1 cut(s) 358
DriI GACNNNNNGTC 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 342
Eam1105I GACNNNNNGTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 342
Eco130I CCWWGG 5 cut(s) 92, 573, 804, 924, 1243
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 818
EcoRII CCWGG 1 cut(s) 466
EcoT14I CCWWGG 5 cut(s) 92, 573, 804, 924, 1243
ErhI CCWWGG 5 cut(s) 92, 573, 804, 924, 1243
FaeI CATG 9 cut(s) 84, 96, 157, 263, 281, 287, 340, 476, 1247
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 3 cut(s) 376, 1077, 1105
FatI CATG 9 cut(s) 80, 92, 153, 259, 277, 283, 336, 472, 1243
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 9 cut(s) 330, 452, 516, 606, 762, 1032, 1220, 1352, 1408
FokI GGATG 3 cut(s) 788, 1040, 1360
Fsp4HI GCNGC 9 cut(s) 330, 452, 516, 606, 762, 1032, 1220, 1352, 1408
FspBI CTAG 5 cut(s) 243, 404, 528, 906, 1080
FspI TGCGCA 1 cut(s) 1086
GlaI GCGC 4 cut(s) 160, 228, 1020, 1086
GluI GCNGC 9 cut(s) 330, 452, 516, 606, 762, 1032, 1220, 1352, 1408
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 3 cut(s) 548, 734, 809
HapII CCGG 3 cut(s) 42, 125, 1316
HgaI GACGC 4 cut(s) 9, 233, 626, 1124
HhaI GCGC 4 cut(s) 161, 229, 1021, 1087
Hin1II CATG 9 cut(s) 84, 96, 157, 263, 281, 287, 340, 476, 1247
Hin6I GCGC 4 cut(s) 159, 227, 1019, 1085
HinP1I GCGC 4 cut(s) 159, 227, 1019, 1085
HindIII AAGCTT 2 cut(s) 65, 167
HinfI GANTC 8 cut(s) 269, 316, 502, 623, 706, 838, 865, 1402
HpaII CCGG 3 cut(s) 42, 125, 1316
HphI GGTGA 2 cut(s) 31, 139
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 5 cut(s) 498, 544, 711, 837, 1125
Hpy188III TCNNGA 7 cut(s) 260, 598, 847, 932, 1153, 1178, 1322
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 7 cut(s) 290, 302, 373, 550, 650, 706, 1276
HpyCH4III ACNGT 3 cut(s) 27, 109, 1330
HpyCH4IV ACGT 2 cut(s) 117, 1378
HpyCH4V TGCA 5 cut(s) 14, 105, 643, 1219, 1351
HpyF10VI GCNNNNNNNGC 8 cut(s) 158, 524, 725, 746, 785, 806, 1016, 1031
HpySE526I ACGT 2 cut(s) 117, 1378
Hsp92II CATG 9 cut(s) 84, 96, 157, 263, 281, 287, 340, 476, 1247
HspAI GCGC 4 cut(s) 159, 227, 1019, 1085
Kzo9I GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
Lsp1109I GCAGC 7 cut(s) 316, 463, 527, 617, 748, 1231, 1363
LweI GCATC 4 cut(s) 630, 766, 1018, 1338
MaeI CTAG 5 cut(s) 243, 404, 528, 906, 1080
MaeII ACGT 2 cut(s) 117, 1378
MaeIII GTNAC 2 cut(s) 21, 1399
MalI GATC 7 cut(s) 38, 353, 533, 566, 632, 1184, 1367
MboI GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
MboII GAAGA 6 cut(s) 68, 103, 173, 359, 511, 680
MflI RGATCY 1 cut(s) 351
MluCI AATT 3 cut(s) 407, 612, 940
MlyI GAGTC 6 cut(s) 310, 496, 632, 832, 859, 1396
MseI TTAA 5 cut(s) 357, 375, 410, 693, 1161
MslI CAYNNNNRTG 3 cut(s) 282, 341, 638
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 3 cut(s) 42, 125, 1316
MspR9I CCNGG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 2 cut(s) 210, 227
MwoI GCNNNNNNNGC 8 cut(s) 158, 524, 725, 746, 785, 806, 1016, 1031
NcoI CCATGG 2 cut(s) 92, 1243
NdeII GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
NlaIII CATG 9 cut(s) 84, 96, 157, 263, 281, 287, 340, 476, 1247
NlaIV GGNNCC 3 cut(s) 571, 1241, 1389
NmeAIII GCCGAG 2 cut(s) 766, 1030
NmuCI GTSAC 2 cut(s) 21, 1399
NsbI TGCGCA 1 cut(s) 1086
PagI TCATGA 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 1366
PctI GAATGC 1 cut(s) 1279
PfeI GAWTC 2 cut(s) 269, 706
PinAI ACCGGT 1 cut(s) 41
PkrI GCNGC 9 cut(s) 331, 453, 517, 607, 763, 1033, 1221, 1353, 1409
PleI GAGTC 6 cut(s) 310, 496, 631, 832, 859, 1396
PpsI GAGTC 6 cut(s) 310, 496, 631, 832, 859, 1396
Ppu21I YACGTR 1 cut(s) 1379
PshAI GACNNNNGTC 1 cut(s) 842
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 571, 1241, 1389
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 1 cut(s) 1372
RsaNI GTAC 1 cut(s) 1371
RseI CAYNNNNRTG 3 cut(s) 282, 341, 638
SaqAI TTAA 5 cut(s) 357, 375, 410, 693, 1161
SatI GCNGC 9 cut(s) 330, 452, 516, 606, 762, 1032, 1220, 1352, 1408
Sau3AI GATC 7 cut(s) 36, 351, 531, 564, 630, 1182, 1365
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 6 cut(s) 310, 496, 632, 832, 859, 1396
ScrFI CCNGG 1 cut(s) 468
SfaNI GCATC 4 cut(s) 630, 766, 1018, 1338
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 3 cut(s) 282, 341, 638
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
Sse9I AATT 3 cut(s) 407, 612, 940
SsiI CCGC 6 cut(s) 186, 977, 1025, 1031, 1205, 1385
SspMI CTAG 5 cut(s) 243, 404, 528, 906, 1080
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 5 cut(s) 92, 573, 804, 924, 1243
TaaI ACNGT 3 cut(s) 27, 109, 1330
TaiI ACGT 2 cut(s) 120, 1381
TaqI TCGA 6 cut(s) 54, 114, 534, 638, 846, 868
TasI AATT 3 cut(s) 407, 612, 940
TauI GCSGC 1 cut(s) 1034
TfiI GAWTC 2 cut(s) 269, 706
Tru1I TTAA 5 cut(s) 357, 375, 410, 693, 1161
Tru9I TTAA 5 cut(s) 357, 375, 410, 693, 1161
TseFI GTSAC 2 cut(s) 21, 1399
TseI GCWGC 8 cut(s) 329, 451, 515, 605, 761, 1219, 1351, 1407
Tsp45I GTSAC 2 cut(s) 21, 1399
TspDTI ATGAA 6 cut(s) 489, 569, 767, 869, 933, 1295
TspGWI ACGGA 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 203
XspI CTAG 5 cut(s) 243, 404, 528, 906, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.