Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000793

Physical Location & Seq

Genomic Coordinates Reverse (-)

35586329 .. 35587123

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0204400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCTTTGCAGGCGAAGCGGTACTAGGTGGACTCCTACTACAGATCAGATAAGAATCCTGAAGGAGCTTTACTACGACAAGGGAGTTAAGTCCCCAACTACAGAGCAGATTCAGAGGATCTGTCTCCAGTTGAAACAGTACGGAAAGATTGAGGGCAAGAACGTCTTTTATTGGTTCCAGAACCACAAGGCTCGGGAGAGGCAGAAGAAGATGTTCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTTAGATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGAGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAAAGTTTTATGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTGGTGTTGGTGGATCCATTAATCTCAATTTTGGGTCATGGGTCGGCTGCAGTGTTGACCCATATTCCTCCTCATCCTTCACTACTAGTACTAGTACTACTTTCTTTGACAGGAATGAAGAACAAACTTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCACGGTGAGGACATCTTTGGCAACATGAAAACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTATTCCGGTGGCTGGGGCGGCTACAACGGTGGCTCTTGCATTTCCCTTGAGCTCATCCTCAACTCCTCCGGAGCTGCTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009877 GO:0016020 GO:0016324 GO:0022622 GO:0032501 GO:0032502 GO:0044403 GO:0044419 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048364 GO:0048731 GO:0048856 GO:0051704 GO:0071944 GO:0098590 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04910 map04910

Pfam Domains

Protein Families

Band_7

Protein Analysis

264

Amino Acids

28.98

Weight (kDa)

5.85

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	8 - 68	1e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25250 AT5G25260 AT5G64870
fragaria_vesca	FvH4_2g28360 FvH4_2g28361 FvH4_2g28363 FvH4_6g10190
malus_domestica	MD08G1153100.v1.1 MD15G1129900.v1.1 MD15G1130000.v1.1 MD15G1130100.v1.1
prunus_persica	Prupe.1G485400_v2.0.a1 Prupe.1G485500_v2.0.a1 Prupe.1G485600_v2.0.a1 Prupe.1G485600_v2.0.a1
pyrus_communis	pycom08g13240
rosa_chinensis	RchiOBHm_Chr3g0460921 RchiOBHm_Chr4g0425621 RchiOBHm_Chr4g0425631 RchiOBHm_Chr6g0297281 RchiOBHm_Chr6g0297301 RchiOBHm_Chr6g0297311
rosa_laevigata	RLG00000007352 RLG00000011612 RLG00000011613 RLG00000011615 RLG00000024965
rosa_multiflora	Rmu_co8465209.1_g000001 Rmu_sc0003958.1_g000017 Rmu_sc0004535.1_g000003 Rmu_sc0004535.1_g000007 Rmu_sc0004535.1_g000008 Rmu_sc0013249.1_g000009 Rmu_sc0021377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00306830 Rroxscaffold_6G00419030 Rroxscaffold_7G00170670 Rroxscaffold_7G00170690
rosa_rugosa	Rorug03G0047100 Rorug04G0204200 Rorug04G0204400 Rorug06G0270200 Rorug06G0270500 Rorug06G0270600
rosa_samantha	Rh3AG104500 Rh3BG108200 Rh3CG109900 Rh3DG110000 Rh4AG261700 Rh4BG267600 Rh4CG278500 Rh4CG278700 Rh4DG263500 Rh6AG381700 Rh6AG381900 Rh6AG382000 Rh6BG389700 Rh6BG389900 Rh6BG390000 Rh6CG394900 Rh6CG395100 Rh6CG395200 Rh6DG381600 Rh6DG381900 Rh6DG382000
rosa_wichuraiana	Rw3G008900 Rw4G022620 Rw6G033250 Rw6G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	773
AciI	CCGC	3 cut(s)	18, 693, 723
AclWI	GGATC	5 cut(s)	125, 300, 397, 462, 475
AcuI	CTGAAG	2 cut(s)	80, 321
AfaI	GTAC	5 cut(s)	22, 140, 274, 544, 550
AfiI	CCNNNNNNNGG	2 cut(s)	644, 717
AgsI	TTSAA	3 cut(s)	133, 426, 620
AhlI	ACTAGT	3 cut(s)	446, 539, 545
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	5 cut(s)	67, 341, 434, 757, 779
AluI	AGCT	5 cut(s)	67, 341, 434, 757, 779
Alw21I	GWGCWC	1 cut(s)	759
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	5 cut(s)	125, 300, 397, 462, 475
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	773
ApeKI	GCWGC	2 cut(s)	501, 779
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	3 cut(s)	212, 448, 624
Asp718I	GGTACC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	599, 659
AvaI	CYCGRG	1 cut(s)	192
AxyI	CCTNAGG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	759
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	1 cut(s)	759
BbvI	GCAGC	2 cut(s)	488, 766
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	3 cut(s)	446, 539, 545
BfaI	CTAG	4 cut(s)	24, 447, 540, 546
BfmI	CTRYAG	3 cut(s)	39, 99, 502
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	4 cut(s)	502, 694, 724, 780
BlsI	GCNGC	4 cut(s)	503, 695, 725, 781
BmcAI	AGTACT	2 cut(s)	544, 550
Bme1390I	CCNGG	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	192
BmiI	GGNNCC	3 cut(s)	176, 274, 469
BmrFI	CCNGG	1 cut(s)	611
BmsI	GCATC	1 cut(s)	329
BpmI	CTGGAG	2 cut(s)	110, 456
BpuEI	CTTGAG	1 cut(s)	773
BsaBI	GATNNNNATC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	681
BsaWI	WCCGGW	2 cut(s)	710, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	644, 717
Bse1I	ACTGG	2 cut(s)	127, 460
Bse21I	CCTNAGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	53
BseAI	TCCGGA	1 cut(s)	773
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	3 cut(s)	229, 527, 759
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	644, 717
BseMII	CTCAG	2 cut(s)	279, 444
BseNI	ACTGG	2 cut(s)	127, 460
BseRI	GAGGAG	3 cut(s)	514, 612, 760
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	488, 766
BseYI	CCCAGC	1 cut(s)	717
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	711, 774
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	644, 717
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	237, 759
Bsp13I	TCCGGA	1 cut(s)	773
Bsp143I	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
BspACI	CCGC	3 cut(s)	18, 693, 723
BspCNI	CTCAG	2 cut(s)	280, 443
BspEI	TCCGGA	1 cut(s)	773
BspLI	GGNNCC	3 cut(s)	176, 274, 469
BspMAI	CTGCAG	1 cut(s)	506
BspPI	GGATC	5 cut(s)	125, 300, 397, 462, 475
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	127, 460
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	4 cut(s)	138, 633, 647, 734
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	288, 430, 792
BstF5I	GGATG	3 cut(s)	229, 527, 759
BstKTI	GATC	8 cut(s)	46, 120, 248, 295, 314, 392, 470, 607
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 15, 338, 699, 723, 788
BstNI	CCWGG	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	3 cut(s)	39, 99, 502
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	488, 766
BstX2I	RGATCY	4 cut(s)	117, 311, 389, 467
BstYI	RGATCY	4 cut(s)	117, 311, 389, 467
Bsu36I	CCTNAGG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	229, 527, 759
BtsI	GCAGTG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	511, 629
Cac8I	GCNNGC	1 cut(s)	11
Csp6I	GTAC	5 cut(s)	21, 139, 273, 543, 549
CviAII	CATG	7 cut(s)	230, 238, 400, 492, 586, 640, 667
CviQI	GTAC	5 cut(s)	21, 139, 273, 543, 549
DdeI	CTNAG	3 cut(s)	288, 430, 792
DpnI	GATC	8 cut(s)	45, 119, 247, 294, 313, 391, 469, 606
DpnII	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
Ecl136II	GAGCTC	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	759
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	2 cut(s)	80, 321
Eco81I	CCTNAGG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	7 cut(s)	233, 241, 403, 495, 589, 643, 670
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	7 cut(s)	229, 237, 399, 491, 585, 639, 666
Fnu4HI	GCNGC	4 cut(s)	502, 694, 724, 780
FokI	GGATG	3 cut(s)	236, 514, 746
FriOI	GRGCYC	1 cut(s)	759
Fsp4HI	GCNGC	4 cut(s)	502, 694, 724, 780
FspBI	CTAG	4 cut(s)	24, 447, 540, 546
GluI	GCNGC	4 cut(s)	502, 694, 724, 780
GsaI	CCCAGC	1 cut(s)	721
GsuI	CTGGAG	2 cut(s)	110, 456
HapII	CCGG	2 cut(s)	711, 774
Hin1II	CATG	7 cut(s)	233, 241, 403, 495, 589, 643, 670
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HinfI	GANTC	3 cut(s)	31, 54, 109
HpaII	CCGG	2 cut(s)	711, 774
HphI	GGTGA	2 cut(s)	599, 659
Hpy166II	GTNNAC	3 cut(s)	30, 216, 511
Hpy188I	TCNGA	4 cut(s)	48, 114, 223, 682
Hpy188III	TCNNGA	4 cut(s)	58, 178, 194, 774
Hpy8I	GTNNAC	3 cut(s)	30, 216, 511
HpyAV	CCTTC	3 cut(s)	55, 541, 635
HpyCH4III	ACNGT	4 cut(s)	138, 633, 647, 734
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	6 cut(s)	9, 241, 320, 504, 643, 744
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 15, 338, 699, 723, 788
HpyF3I	CTNAG	3 cut(s)	288, 430, 792
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	7 cut(s)	233, 241, 403, 495, 589, 643, 670
Kpn2I	TCCGGA	1 cut(s)	773
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
LmnI	GCTCC	2 cut(s)	64, 776
Lsp1109I	GCAGC	2 cut(s)	488, 766
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	4 cut(s)	24, 447, 540, 546
MaeII	ACGT	1 cut(s)	162
MalI	GATC	8 cut(s)	45, 119, 247, 294, 313, 391, 469, 606
MboI	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
MboII	GAAGA	6 cut(s)	217, 220, 306, 327, 584, 614
MfeI	CAATTG	1 cut(s)	277
MflI	RGATCY	4 cut(s)	117, 311, 389, 467
MhlI	GDGCHC	2 cut(s)	237, 759
MluCI	AATT	2 cut(s)	277, 481
MlyI	GAGTC	1 cut(s)	25
MroI	TCCGGA	1 cut(s)	773
MroXI	GAANNNNTTC	3 cut(s)	212, 448, 624
MseI	TTAA	4 cut(s)	87, 303, 357, 474
MspA1I	CMGCKG	2 cut(s)	341, 434
MspI	CCGG	2 cut(s)	711, 774
MspR9I	CCNGG	1 cut(s)	611
MunI	CAATTG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	6 cut(s)	10, 15, 338, 699, 723, 788
NdeII	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
NlaIII	CATG	7 cut(s)	233, 241, 403, 495, 589, 643, 670
NlaIV	GGNNCC	3 cut(s)	176, 274, 469
PdmI	GAANNNNTTC	3 cut(s)	212, 448, 624
PfeI	GAWTC	2 cut(s)	54, 109
PkrI	GCNGC	4 cut(s)	503, 695, 725, 781
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	474
Psp124BI	GAGCTC	1 cut(s)	759
Psp6I	CCWGG	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	176, 274, 469
PsrI	GAACNNNNNNTAC	2 cut(s)	436, 468
PstI	CTGCAG	1 cut(s)	506
PsuI	RGATCY	4 cut(s)	117, 311, 389, 467
PvuII	CAGCTG	2 cut(s)	341, 434
RsaI	GTAC	5 cut(s)	22, 140, 274, 544, 550
RsaNI	GTAC	5 cut(s)	21, 139, 273, 543, 549
SacI	GAGCTC	1 cut(s)	759
SaqAI	TTAA	4 cut(s)	87, 303, 357, 474
SatI	GCNGC	4 cut(s)	502, 694, 724, 780
Sau3AI	GATC	8 cut(s)	43, 117, 245, 292, 311, 389, 467, 604
ScaI	AGTACT	2 cut(s)	544, 550
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	2 cut(s)	237, 759
SetI	ASST	9 cut(s)	29, 69, 165, 289, 343, 436, 691, 759, 781
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	3 cut(s)	39, 99, 502
SmlI	CTYRAG	1 cut(s)	752
SmoI	CTYRAG	1 cut(s)	752
SpeI	ACTAGT	3 cut(s)	446, 539, 545
Sse9I	AATT	2 cut(s)	277, 481
SsiI	CCGC	3 cut(s)	18, 693, 723
SspMI	CTAG	4 cut(s)	24, 447, 540, 546
SstI	GAGCTC	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	4 cut(s)	138, 633, 647, 734
TaiI	ACGT	1 cut(s)	165
TasI	AATT	2 cut(s)	277, 481
TatI	WGTACW	2 cut(s)	542, 548
TauI	GCSGC	2 cut(s)	696, 726
TfiI	GAWTC	2 cut(s)	54, 109
Tru1I	TTAA	4 cut(s)	87, 303, 357, 474
Tru9I	TTAA	4 cut(s)	87, 303, 357, 474
TscAI	CASTG	2 cut(s)	511, 636
TseI	GCWGC	2 cut(s)	501, 779
TspDTI	ATGAA	5 cut(s)	218, 410, 574, 585, 683
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	511, 636
VspI	ATTAAT	1 cut(s)	474
XmnI	GAANNNNTTC	3 cut(s)	212, 448, 624
XspI	CTAG	4 cut(s)	24, 447, 540, 546
ZrmI	AGTACT	2 cut(s)	544, 550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.