FvH4_6g10190

Flotillin-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
6059432 .. 6061445
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10190.t1

Sequence Viewer

Length: 1440 bp
ATGTATAAAGTAGCAAGCGCCAATGAGTATCTAGTGATCACTGGTATCGGAATCGACGACATTAAGATCAGAAAGAAGGCATGGGTGCTTCCGGGGCAGTCCTACACCTTCATCGACCTCTCCCCTGTCAACTACACCTTCGAAGTTCAAGCCATGAGCGCCGAGAAGCTCCCCTTCATCCTCCCCGCCGTCTTCACCATCGGCCCTTTTGACGCTAGGGACTCCCTTAAGAAGTACGCCAAGCTCATTTCTTCTCATGACAAGAACTCCAGCCACGTCAAGGAGCTCGTCCAGGGGATCATCGAGGGAGAGACTCGTGTCCTCGCAGCCTCGATGACCATGGAGCAGATCTTCAAAGGTACAAAAGAGTTCAAAAAGGAGGTGTTCGACAAGGTTCAGCTGGAGTTGGATCAGTTCGGGCTTTATATTTATAATGCAAATGTGAAGCAGTTGGTGGACGTAGTAGGGCATGAGTATTTCAGTTACTTGGGGCAGAAGACACAGATGGAAGCGGCCAACCAGGCCAAGGTGGACGTGGCGGAGGCCAAAATGAAGGGAGAGGTAGGCTCTAAGCTGAGGCAAGGGAAGACATTGCAGAATGCTGCAAAGATCGATGCGGAGACGAAGATCATATCAACCCAAAGGCAAGGGGAGGGAAAGAAGGAGGAGGTTAGGGTTAACACTGAGGTTAAAATTTATGAAAACCAAAGAGAAGCTGATGTGGCAAAGGCGAATGCTGAGCTGGCGATGAAGAAGGCCGGGTGGGAGAGGGAGGCGGAGGTGGCGCAAGTGGAGGCAGCGAAGGCGGTGGCGTTGAAAGAAGCTGAGCTGCAAAGGGAGGTGGAAATGATGAATGCGATGACTATGACTGAGAAGCTAAAGGCTGAGTTCTTGAGCAAGGCAAGTGTTGAGGCCGAGACCAAGGCGCAAGAGGCGAATTGGAATCTCTACCAAAAGCAGAAGGCAGCGGATGCGGTTCTCTACCAAAAGGAGAAAGAGGCTGAGGCGCAGAGAGCAATGGCCGAGGCCAAGTTTTATGCTCAGGCAAAAGCTGCGGATGGAGAGCTTTATGCAAAGAAGACACAGGCCGAGGGACTTATGGTGCTTGGACAAGCAGAAGGTGTCTACCTGCGCACTCTTATGGAATCATTGGGAGGCAACTATGAAGCGGTGAGAGACTACTTGATGATCAATCGTGGGATGTACCAAGAGGTTGCTAGGATTAACGGCGAGGCGGTGCGGGGACTTGAGCCGAAAATTAGCATCTGGACCAACGGCGGTGAGGGTGGTGCTGGCGGCGGCAATGCAGCTATGAAGGAGGTTGCGGGAGTTTACAAGATGTTGCCACCATTGTTCAAGACTGTTCAGGACCAAACAGGAATGCTGCCTCCTACTTGGATGGGCAATCTACCAGTTGCTGATGGTTCTAAACGTAATTGA

Protein Analysis

480

Amino Acids

53.08

Weight (kDa)

6.48

Isoelectric Point (pI)

23.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 5 - 183 2.8e-21 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
Acc16I TGCGCA 1 cut(s) 1133
Acc36I ACCTGC 1 cut(s) 1137
AccI GTMKAC 1 cut(s) 1125
AclWI GGATC 2 cut(s) 305, 417
AcoI YGGCCR 2 cut(s) 513, 1020
AcsI RAATTY 1 cut(s) 693
AfaI GTAC 3 cut(s) 236, 361, 1205
AfiI CCNNNNNNNGG 2 cut(s) 280, 526
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 5 cut(s) 149, 355, 373, 817, 1357
AjiI CACGTC 2 cut(s) 277, 535
AjnI CCWGG 2 cut(s) 291, 519
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 4 cut(s) 305, 614, 911, 1170
AlwI GGATC 2 cut(s) 305, 417
AlwNI CAGNNNCTG 1 cut(s) 1418
AoxI GGCC 9 cut(s) 202, 513, 522, 543, 756, 912, 1020, 1026, 1086
ApeKI GCWGC 8 cut(s) 326, 602, 797, 829, 965, 1052, 1307, 1384
ApoI RAATTY 1 cut(s) 693
AspLEI GCGC 6 cut(s) 20, 161, 787, 928, 1009, 1134
AspS9I GGNCC 3 cut(s) 203, 1269, 1369
AsuC2I CCSGG 2 cut(s) 93, 760
AsuHPI GGTGA 3 cut(s) 187, 1183, 1292
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 2 cut(s) 1269, 1369
BanII GRGCYC 1 cut(s) 288
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 4 cut(s) 184, 503, 593, 1085
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 2 cut(s) 575, 1002
BbvI GCAGC 8 cut(s) 338, 589, 809, 816, 977, 1039, 1319, 1371
BccI CCATC 5 cut(s) 206, 499, 1052, 1393, 1415
BceAI ACGGC 3 cut(s) 173, 1243, 1291
BciT130I CCWGG 2 cut(s) 293, 521
BclI TGATCA 2 cut(s) 36, 1188
BcnI CCSGG 2 cut(s) 93, 760
BcoDI GTCTC 4 cut(s) 305, 614, 911, 1170
BfaI CTAG 3 cut(s) 32, 216, 1218
BfoI RGCGCY 2 cut(s) 21, 162
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 1137
BglI GCCNNNNNGGC 1 cut(s) 521
BglII AGATCT 1 cut(s) 348
BlpI GCTNAGC 2 cut(s) 738, 825
Bme1390I CCNGG 4 cut(s) 93, 293, 521, 760
Bme18I GGWCC 2 cut(s) 1269, 1369
BmgBI CACGTC 2 cut(s) 277, 535
BmgT120I GGNCC 3 cut(s) 203, 1269, 1369
BmrFI CCNGG 4 cut(s) 93, 293, 521, 760
BmsI GCATC 3 cut(s) 604, 961, 1272
BoxI GACNNNNGTC 1 cut(s) 317
BpiI GAAGAC 4 cut(s) 184, 503, 593, 1085
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 2 cut(s) 253, 422
Bpu10I CCTNAGC 3 cut(s) 575, 1002, 1041
Bpu1102I GCTNAGC 2 cut(s) 738, 825
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 913, 1268
BpuMI CCSGG 2 cut(s) 93, 760
Bsa29I ATCGAT 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 911
BsaJI CCNNGG 7 cut(s) 92, 292, 339, 525, 921, 1023, 1089
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 526
Bse1I ACTGG 2 cut(s) 46, 1412
Bse3DI GCAATG 3 cut(s) 590, 1023, 1309
BseBI CCWGG 2 cut(s) 293, 521
BseCI ATCGAT 1 cut(s) 612
BseDI CCNNGG 7 cut(s) 92, 292, 339, 525, 921, 1023, 1089
BseGI GGATG 5 cut(s) 177, 976, 1063, 1206, 1404
BseLI CCNNNNNNNGG 2 cut(s) 280, 526
BseMI GCAATG 3 cut(s) 590, 1023, 1309
BseMII CTCAG 8 cut(s) 566, 675, 729, 816, 861, 876, 993, 1055
BseNI ACTGG 2 cut(s) 46, 1412
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 8 cut(s) 338, 589, 809, 816, 977, 1039, 1319, 1371
BshFI GGCC 9 cut(s) 204, 515, 524, 545, 758, 914, 1022, 1028, 1088
BshVI ATCGAT 1 cut(s) 612
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 2 cut(s) 92, 759
BslFI GGGAC 3 cut(s) 233, 1107, 1257
BslI CCNNNNNNNGG 2 cut(s) 280, 526
BsmAI GTCTC 4 cut(s) 305, 614, 911, 1170
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 3 cut(s) 233, 1107, 1257
BsmI GAATGC 4 cut(s) 604, 739, 859, 1386
BsnI GGCC 9 cut(s) 204, 515, 524, 545, 758, 914, 1022, 1028, 1088
Bso31I GGTCTC 1 cut(s) 911
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
Bsp1720I GCTNAGC 2 cut(s) 738, 825
Bsp19I CCATGG 1 cut(s) 339
BspANI GGCC 9 cut(s) 204, 515, 524, 545, 758, 914, 1022, 1028, 1088
BspCNI CTCAG 8 cut(s) 567, 676, 730, 817, 862, 877, 994, 1054
BspDI ATCGAT 1 cut(s) 612
BspHI TCATGA 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 1137
BspPI GGATC 2 cut(s) 305, 417
BspT104I TTCGAA 1 cut(s) 141
BspTI CTTAAG 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 911
BsrDI GCAATG 3 cut(s) 590, 1023, 1309
BsrI ACTGG 2 cut(s) 46, 1412
BssECI CCNNGG 7 cut(s) 92, 292, 339, 525, 921, 1023, 1089
BssMI GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 3 cut(s) 339, 525, 921
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 293, 521
Bst4CI ACNGT 1 cut(s) 1363
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 2 cut(s) 971, 1052
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 16, 744, 1294
BstDEI CTNAG 9 cut(s) 570, 575, 684, 738, 825, 870, 885, 1002, 1041
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 5 cut(s) 177, 976, 1063, 1206, 1404
BstH2I RGCGCY 2 cut(s) 21, 162
BstHHI GCGC 6 cut(s) 20, 161, 787, 928, 1009, 1134
BstKTI GATC 8 cut(s) 39, 69, 300, 351, 412, 612, 630, 1191
BstMAI GTCTC 4 cut(s) 305, 614, 911, 1170
BstMBI GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
BstNI CCWGG 2 cut(s) 293, 521
BstPAI GACNNNNGTC 1 cut(s) 317
BstSCI CCNGG 4 cut(s) 91, 291, 519, 758
BstV1I GCAGC 8 cut(s) 338, 589, 809, 816, 977, 1039, 1319, 1371
BstV2I GAAGAC 4 cut(s) 184, 503, 593, 1085
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
Bsu15I ATCGAT 1 cut(s) 612
BsuRI GGCC 9 cut(s) 204, 515, 524, 545, 758, 914, 1022, 1028, 1088
BsuTUI ATCGAT 1 cut(s) 612
BtgI CCRYGG 1 cut(s) 339
BtgZI GCGATG 2 cut(s) 761, 872
BtrI CACGTC 2 cut(s) 277, 535
BtsCI GGATG 5 cut(s) 177, 976, 1063, 1206, 1404
BtsIMutI CAGTG 2 cut(s) 39, 681
BveI ACCTGC 1 cut(s) 1137
Cac8I GCNNGC 3 cut(s) 16, 744, 1294
CaiI CAGNNNCTG 1 cut(s) 1418
CciI TCATGA 1 cut(s) 256
CfoI GCGC 6 cut(s) 20, 161, 787, 928, 1009, 1134
Cfr13I GGNCC 3 cut(s) 203, 1269, 1369
ClaI ATCGAT 1 cut(s) 612
CseI GACGC 1 cut(s) 221
Csp6I GTAC 3 cut(s) 235, 360, 1204
CviAII CATG 5 cut(s) 81, 154, 257, 340, 470
CviQI GTAC 3 cut(s) 235, 360, 1204
DdeI CTNAG 9 cut(s) 570, 575, 684, 738, 825, 870, 885, 1002, 1041
DpnI GATC 8 cut(s) 38, 68, 299, 350, 411, 611, 629, 1190
DpnII GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
EaeI YGGCCR 2 cut(s) 513, 1020
EciI GGCGGA 2 cut(s) 554, 791
Ecl136II GAGCTC 1 cut(s) 286
Eco130I CCWWGG 3 cut(s) 339, 525, 921
Eco24I GRGCYC 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 911
Eco47I GGWCC 2 cut(s) 1269, 1369
Eco53kI GAGCTC 1 cut(s) 286
EcoICRI GAGCTC 1 cut(s) 286
EcoRII CCWGG 2 cut(s) 291, 519
EcoT14I CCWWGG 3 cut(s) 339, 525, 921
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 3 cut(s) 339, 525, 921
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 5 cut(s) 84, 157, 260, 343, 473
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 3 cut(s) 233, 1107, 1257
FatI CATG 5 cut(s) 80, 153, 256, 339, 469
FauI CCCGC 3 cut(s) 193, 1233, 1318
FbaI TGATCA 2 cut(s) 36, 1188
FblI GTMKAC 1 cut(s) 1125
FokI GGATG 5 cut(s) 164, 983, 1070, 1213, 1411
FriOI GRGCYC 1 cut(s) 288
FspBI CTAG 3 cut(s) 32, 216, 1218
FspI TGCGCA 1 cut(s) 1133
GlaI GCGC 6 cut(s) 19, 160, 786, 927, 1008, 1133
GsuI CTGGAG 2 cut(s) 253, 422
HaeII RGCGCY 2 cut(s) 21, 162
HaeIII GGCC 9 cut(s) 204, 515, 524, 545, 758, 914, 1022, 1028, 1088
HapII CCGG 2 cut(s) 92, 759
HgaI GACGC 1 cut(s) 221
HhaI GCGC 6 cut(s) 20, 161, 787, 928, 1009, 1134
Hin1II CATG 5 cut(s) 84, 157, 260, 343, 473
Hin6I GCGC 6 cut(s) 18, 159, 785, 926, 1007, 1132
HinP1I GCGC 6 cut(s) 18, 159, 785, 926, 1007, 1132
HincII GTYRAC 2 cut(s) 130, 679
HindII GTYRAC 2 cut(s) 130, 679
HinfI GANTC 5 cut(s) 51, 221, 313, 943, 1145
HpaI GTTAAC 1 cut(s) 679
HpaII CCGG 2 cut(s) 92, 759
HphI GGTGA 3 cut(s) 187, 1183, 1292
Hpy166II GTNNAC 6 cut(s) 130, 457, 532, 679, 1126, 1333
Hpy188I TCNGA 2 cut(s) 50, 71
Hpy188III TCNNGA 5 cut(s) 257, 892, 1267, 1357, 1367
Hpy8I GTNNAC 6 cut(s) 130, 457, 532, 679, 1126, 1333
Hpy99I CGWCG 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 1363
HpyCH4IV ACGT 4 cut(s) 276, 459, 534, 1432
HpyCH4V TGCA 6 cut(s) 437, 595, 605, 832, 1073, 1307
HpyF3I CTNAG 9 cut(s) 570, 575, 684, 738, 825, 870, 885, 1002, 1041
HpySE526I ACGT 4 cut(s) 276, 459, 534, 1432
Hsp92II CATG 5 cut(s) 84, 157, 260, 343, 473
HspAI GCGC 6 cut(s) 18, 159, 785, 926, 1007, 1132
Ksp22I TGATCA 2 cut(s) 36, 1188
KspAI GTTAAC 1 cut(s) 679
Kzo9I GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
LmnI GCTCC 3 cut(s) 174, 283, 343
Lsp1109I GCAGC 8 cut(s) 338, 589, 809, 816, 977, 1039, 1319, 1371
LweI GCATC 3 cut(s) 604, 961, 1272
MaeI CTAG 3 cut(s) 32, 216, 1218
MaeII ACGT 4 cut(s) 276, 459, 534, 1432
MaeIII GTNAC 1 cut(s) 482
MalI GATC 8 cut(s) 38, 68, 299, 350, 411, 611, 629, 1190
MboI GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
MboII GAAGA 8 cut(s) 184, 243, 343, 508, 598, 637, 763, 1090
MflI RGATCY 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 4 cut(s) 693, 937, 1257, 1435
MlyI GAGTC 2 cut(s) 215, 307
MmeI TCCRAC 1 cut(s) 387
MseI TTAA 5 cut(s) 63, 228, 678, 690, 1224
MslI CAYNNNNRTG 1 cut(s) 1139
MspA1I CMGCKG 2 cut(s) 400, 968
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 2 cut(s) 92, 759
MspR9I CCNGG 4 cut(s) 93, 293, 521, 760
Mva1269I GAATGC 4 cut(s) 604, 739, 859, 1386
MvaI CCWGG 2 cut(s) 293, 521
NciI CCSGG 2 cut(s) 93, 760
NcoI CCATGG 1 cut(s) 339
NdeII GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
NlaIII CATG 5 cut(s) 84, 157, 260, 343, 473
NmeAIII GCCGAG 4 cut(s) 187, 940, 1048, 1114
NsbI TGCGCA 1 cut(s) 1133
NspV TTCGAA 1 cut(s) 141
PagI TCATGA 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PctI GAATGC 4 cut(s) 604, 739, 859, 1386
PfeI GAWTC 3 cut(s) 51, 943, 1145
PleI GAGTC 2 cut(s) 215, 307
PpsI GAGTC 2 cut(s) 215, 307
PshAI GACNNNNGTC 1 cut(s) 317
PsiI TTATAA 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 291, 519
PspGI CCWGG 2 cut(s) 291, 519
PspPI GGNCC 3 cut(s) 203, 1269, 1369
PstNI CAGNNNCTG 1 cut(s) 1418
PsuI RGATCY 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 3 cut(s) 236, 361, 1205
RsaNI GTAC 3 cut(s) 235, 360, 1204
RseI CAYNNNNRTG 1 cut(s) 1139
SacI GAGCTC 1 cut(s) 288
SaqAI TTAA 5 cut(s) 63, 228, 678, 690, 1224
Sau3AI GATC 8 cut(s) 36, 66, 297, 348, 409, 609, 627, 1188
Sau96I GGNCC 3 cut(s) 203, 1269, 1369
SchI GAGTC 2 cut(s) 215, 307
ScrFI CCNGG 4 cut(s) 93, 293, 521, 760
SduI GDGCHC 1 cut(s) 288
SfaNI GCATC 3 cut(s) 604, 961, 1272
SfiI GGCCNNNNNGGCC 1 cut(s) 521
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 2 cut(s) 1269, 1369
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 3 cut(s) 227, 892, 1247
SmoI CTYRAG 3 cut(s) 227, 892, 1247
Sse9I AATT 4 cut(s) 693, 937, 1257, 1435
SspMI CTAG 3 cut(s) 32, 216, 1218
SstI GAGCTC 1 cut(s) 288
StyD4I CCNGG 4 cut(s) 91, 291, 519, 758
StyI CCWWGG 3 cut(s) 339, 525, 921
TaaI ACNGT 1 cut(s) 1363
TaiI ACGT 4 cut(s) 279, 462, 537, 1435
TaqI TCGA 7 cut(s) 54, 114, 141, 303, 332, 387, 612
TasI AATT 4 cut(s) 693, 937, 1257, 1435
TauI GCSGC 3 cut(s) 515, 1299, 1302
TfiI GAWTC 3 cut(s) 51, 943, 1145
Tru1I TTAA 5 cut(s) 63, 228, 678, 690, 1224
Tru9I TTAA 5 cut(s) 63, 228, 678, 690, 1224
TscAI CASTG 2 cut(s) 46, 688
TseI GCWGC 8 cut(s) 326, 602, 797, 829, 965, 1052, 1307, 1384
TspDTI ATGAA 8 cut(s) 100, 166, 566, 714, 764, 866, 1179, 1328
TspRI CASTG 2 cut(s) 46, 688
Vha464I CTTAAG 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 1269, 1369
XapI RAATTY 1 cut(s) 693
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XmiI GTMKAC 1 cut(s) 1125
XspI CTAG 3 cut(s) 32, 216, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.