Rh4CG278700

Flotillin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000793
Physical Location & Seq
Reverse (-)
53565863 .. 53566144
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG278700.1

Sequence Viewer

Length: 282 bp
ATGGAGGAGGTCTTCAAAGGGACCAAAGAGTTCAAGAAGGAGGTGTTTGAGAAGGTTCAGCTGGAGTTGGATCAGTTCGGGCTTTTGATAGACAATGCCAATGTTAAACAATTGGTGGGCGTTAGGGGACATGAGTATTTTGGTTACTTGGGACAGAAGATTCAGATGGAGGCTGCCAACCAGGCCAAGGTTGACATGGCCGAGGCCAAAATGAAGGGAGAGGTTGGCTCTAAGCTGAGGGAGGGGCAGACATTGCAAAACGGAGGCAAGATCGACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Band_7

Protein Analysis

93

Amino Acids

10.42

Weight (kDa)

5.85

Isoelectric Point (pI)

8.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 16, 34
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 61, 235
AluI AGCT 2 cut(s) 61, 235
AlwI GGATC 1 cut(s) 78
AoxI GGCC 3 cut(s) 183, 198, 204
ApeKI GCWGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 4
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 182
BfaI CTAG 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 182
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 4
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 186, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 186, 201
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 227
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 3 cut(s) 185, 200, 206
BslFI GGGAC 3 cut(s) 34, 141, 165
BslI CCNNNNNNNGG 1 cut(s) 187
BsmFI GGGAC 3 cut(s) 34, 141, 165
BsnI GGCC 3 cut(s) 185, 200, 206
Bsp143I GATC 2 cut(s) 70, 270
BspANI GGCC 3 cut(s) 185, 200, 206
BspCNI CTCAG 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 186, 201
BssMI GATC 2 cut(s) 70, 270
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 231, 236
BstKTI GATC 2 cut(s) 73, 273
BstMBI GATC 2 cut(s) 70, 270
BstMWI GCNNNNNNNGC 2 cut(s) 182, 253
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 4
BsuRI GGCC 3 cut(s) 185, 200, 206
Cfr13I GGNCC 1 cut(s) 21
CviAII CATG 2 cut(s) 131, 196
CviJI RGCY 8 cut(s) 61, 82, 173, 185, 200, 206, 228, 235
CviKI_1 RGCY 8 cut(s) 61, 82, 173, 185, 200, 206, 228, 235
DdeI CTNAG 2 cut(s) 231, 236
DpnI GATC 2 cut(s) 72, 272
DpnII GATC 2 cut(s) 70, 270
EaeI YGGCCR 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 134, 199
FaiI YATR 2 cut(s) 132, 197
FaqI GGGAC 3 cut(s) 34, 141, 165
FatI CATG 2 cut(s) 130, 195
Fnu4HI GCNGC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 174
FspBI CTAG 1 cut(s) 280
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 3 cut(s) 185, 200, 206
Hin1II CATG 2 cut(s) 134, 199
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 160, 275
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 31, 46, 208
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 253
HpyF3I CTNAG 2 cut(s) 231, 236
Hsp92II CATG 2 cut(s) 134, 199
Kzo9I GATC 2 cut(s) 70, 270
LpnPI CCDG 3 cut(s) 47, 167, 194
Lsp1109I GCAGC 1 cut(s) 160
MaeI CTAG 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 143
MalI GATC 2 cut(s) 72, 272
MboI GATC 2 cut(s) 70, 270
MboII GAAGA 2 cut(s) 4, 169
MfeI CAATTG 1 cut(s) 110
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 34, 163, 196, 214, 231, 235, 257
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 182
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 182, 253
NdeII GATC 2 cut(s) 70, 270
NlaIII CATG 2 cut(s) 134, 199
NlaIV GGNNCC 1 cut(s) 22
NmeAIII GCCGAG 1 cut(s) 226
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 1 cut(s) 175
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 61
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 2 cut(s) 70, 270
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 182
SetI ASST 7 cut(s) 12, 45, 57, 63, 192, 225, 237
SinI GGWCC 1 cut(s) 21
Sse9I AATT 1 cut(s) 110
SspMI CTAG 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 186
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 110
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.