Rroxscaffold_7G00170690

Flotillin-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
11089858 .. 11091285
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170690.1

Sequence Viewer

Length: 1428 bp
ATGTATAAAGTAGCTAGCGCTTCCGAGTATCTGGTGATCACAGGGGCCGGAATCCCCGACCTGAAGATCGCAAAGAAGGCATGGGTACTCCCTGGCCAGTCCTACACGGTCATTGACCTCTCTCCGGTGAACTACACATTCGAAGTCCAGGCAATGAGCGCCGAGAAGCTCCCATTTGTTCTCCCTGCCGTCTTTACCATCGGCCCTCGAGCCGACGACATGGATGCCATTGAGAAATACGCCAGGCTCCTCGCCAGCTGCGACAAGAACTCGAAACACGTCGAGGAGCTTGTCCAGGGCATCATCGAGGGTGAGACTCGCGTCCTTGTGGCGTCGATGACCATGGAGGAGGTGTTCAAGGGGACCAAAGAGTTCAAGGAGGAGGTTTTCGACAAGGTTCAGATCGAGCTCAATCAGTTCGGGCTTTTTATCTACAATGCAAATGTTAAGCAGTTGGTGGACGTCCCTGGACACGAGTATTTCAGTTACTTGGGGCAGAAGACTCAGATGGAGGCTGCCAACCAGGCCAAGATCGACGTGGCCGAGGCGAAAATGAAAGGTGCTGTTGGCTCCAAGATGAGGGAGGGGCAGACATTGCAAAACGCTGCCAAGATTGATTCCGAGACGAAGATCATAGCGACTCAGAGGGAAGGGGAGGGGAAGAAGGAGGAGGTTAAGGTGAAGACGGAGGTCAAGGTTTACGAGAACCAAAGAGAAGCTGAGGTGGCTAAAGCAAATGCTGAGCTGGCAATGAAGAAGGCAGGGTGGGCTAAGGAGGCGCAGGTGGCCGAGGTTGAGGCGCAGAAGGCGGTGGCGATGAAGGAGGCCCAGTTGCAAAAGGAGGTGGAGAGGATGAATGCACTGACTATGACCGAAAAGCTCAAGGCCGAGTTTTTGAGTAAGGCAAGTGTTGAGGCCGAAACTAAAGCTCAAGAGGCAAATTGGAAGCTCTACCAAGAACAAAAAGCGGCGGATGCGATTCTTTACCAGAGGGGGAAAGAGGCAGAAGCAATGAGAGCAGCTGCCGAGGCTCAGTTCTTTGCTAAGCAGAGGGCTGCTGATGGAGAGTTTTATGCTAAGAAGAAAGAGGCCGAGGGACTTGTGGAACTTGGAAAAGCGCAAGGTGTTTATCTATGCACTCTTATGGACTCGTTGGGTGGCAACTATGGGGCAATGAGGGACTTCTTGATGATCAATGGTGGGATGTTTCAAGAGATTGCTAGGATCAATGCCGGGGCGGTGCGTGGGCTTCAGCCCAAGATTAGTATATGGACTAATGGCGGAGAGGCTTCCGGTGGTGGCGGCAATGCGGCTATGAAGGAGGCCGCTGGGGTTTATAAAATGTTGCCACCGTTATTCAAGACGGTGCAGGAACAGACGGGAATGCTGCCGCCAAATTGGATGGGCACTTTGCCTGCTGATAATTGA

Protein Analysis

475

Amino Acids

52.14

Weight (kDa)

5.62

Isoelectric Point (pI)

26.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 8 - 184 2.4e-21 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1338
AarI CACCTGC 1 cut(s) 772
AatII GACGTC 1 cut(s) 465
Acc36I ACCTGC 1 cut(s) 772
AccII CGCG 1 cut(s) 321
AciI CCGC 9 cut(s) 809, 968, 971, 1238, 1281, 1302, 1310, 1326, 1391
AclWI GGATC 1 cut(s) 1232
AcoI YGGCCR 3 cut(s) 94, 540, 786
AcuI CTGAAG 2 cut(s) 83, 1235
AcyI GRCGYC 2 cut(s) 332, 462
AfaI GTAC 1 cut(s) 87
AfeI AGCGCT 1 cut(s) 19
AfiI CCNNNNNNNGG 2 cut(s) 124, 579
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 4 cut(s) 358, 376, 1211, 1360
AjiI CACGTC 2 cut(s) 280, 538
AjnI CCWGG 6 cut(s) 91, 147, 242, 294, 466, 522
AloI GAACNNNNNNTCC 2 cut(s) 338, 370
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 308, 617
AlwI GGATC 1 cut(s) 1232
Ama87I CYCGRG 1 cut(s) 207
Aor51HI AGCGCT 1 cut(s) 19
ApeKI GCWGC 7 cut(s) 258, 515, 605, 1019, 1022, 1055, 1387
AspLEI GCGC 5 cut(s) 20, 161, 781, 802, 1120
AspS9I GGNCC 4 cut(s) 45, 203, 363, 826
AsuC2I CCSGG 1 cut(s) 1234
AsuHPI GGTGA 4 cut(s) 46, 139, 323, 691
AsuII TTCGAA 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 1409
BalI TGGCCA 1 cut(s) 96
BanII GRGCYC 1 cut(s) 411
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 2 cut(s) 506, 689
Bbv12I GWGCWC 1 cut(s) 411
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 7 cut(s) 245, 502, 592, 1009, 1031, 1042, 1374
BccI CCATC 4 cut(s) 206, 502, 1055, 1396
BceAI ACGGC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 6 cut(s) 93, 149, 244, 296, 468, 524
BclI TGATCA 2 cut(s) 36, 1191
BcnI CCSGG 1 cut(s) 1234
BcoDI GTCTC 2 cut(s) 308, 617
BfaI CTAG 2 cut(s) 15, 1221
BfoI RGCGCY 2 cut(s) 21, 162
BfuAI ACCTGC 1 cut(s) 772
BglI GCCNNNNNGGC 1 cut(s) 524
BlpI GCTNAGC 2 cut(s) 741, 1044
Bme1390I CCNGG 7 cut(s) 93, 149, 244, 296, 468, 524, 1234
Bme18I GGWCC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 207
BmgBI CACGTC 2 cut(s) 280, 538
BmgT120I GGNCC 4 cut(s) 45, 203, 363, 826
BmiI GGNNCC 4 cut(s) 46, 248, 364, 571
BmrFI CCNGG 7 cut(s) 93, 149, 244, 296, 468, 524, 1234
BmrI ACTGGG 1 cut(s) 823
BmsI GCATC 3 cut(s) 214, 309, 964
BmtI GCTAGC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 823
BoxI GACNNNNGTC 2 cut(s) 320, 689
BpiI GAAGAC 2 cut(s) 506, 689
Bpu10I CCTNAGC 2 cut(s) 720, 771
Bpu1102I GCTNAGC 2 cut(s) 741, 1044
Bpu14I TTCGAA 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 866, 915
BpuMI CCSGG 1 cut(s) 1234
BsaHI GRCGYC 2 cut(s) 332, 462
BsaJI CCNNGG 9 cut(s) 91, 295, 342, 466, 543, 789, 1026, 1092, 1233
BsaWI WCCGGW 2 cut(s) 124, 1292
BsaXI ACNNNNNCTCC 4 cut(s) 338, 368, 815, 845
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 579
Bse1I ACTGG 2 cut(s) 97, 829
Bse3DI GCAATG 6 cut(s) 159, 593, 756, 1017, 1179, 1312
BseBI CCWGG 6 cut(s) 93, 149, 244, 296, 468, 524
BseDI CCNNGG 9 cut(s) 91, 295, 342, 466, 543, 789, 1026, 1092, 1233
BseGI GGATG 5 cut(s) 229, 858, 979, 1209, 1407
BseLI CCNNNNNNNGG 2 cut(s) 124, 579
BseMI GCAATG 6 cut(s) 159, 593, 756, 1017, 1179, 1312
BseMII CTCAG 5 cut(s) 518, 656, 711, 732, 1046
BseNI ACTGG 2 cut(s) 97, 829
BseRI GAGGAG 5 cut(s) 239, 299, 362, 395, 683
BseSI GKGCMC 1 cut(s) 1409
BseXI GCAGC 7 cut(s) 245, 502, 592, 1009, 1031, 1042, 1374
BseYI CCCAGC 1 cut(s) 1328
BsgI GTGCAG 1 cut(s) 1388
Bsh1236I CGCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 4 cut(s) 48, 125, 1233, 1293
BslFI GGGAC 4 cut(s) 376, 449, 1110, 1193
BslI CCNNNNNNNGG 2 cut(s) 124, 579
BsmAI GTCTC 2 cut(s) 308, 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 4 cut(s) 376, 449, 1110, 1193
BsmI GAATGC 2 cut(s) 862, 1389
BsoBI CYCGRG 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 411, 1409
Bsp143I GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
Bsp1720I GCTNAGC 2 cut(s) 741, 1044
Bsp19I CCATGG 1 cut(s) 342
BspACI CCGC 9 cut(s) 809, 968, 971, 1238, 1281, 1302, 1310, 1326, 1391
BspCNI CTCAG 5 cut(s) 517, 655, 712, 733, 1045
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 4 cut(s) 46, 248, 364, 571
BspMI ACCTGC 1 cut(s) 772
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 1 cut(s) 1232
BspT104I TTCGAA 1 cut(s) 141
BsrDI GCAATG 6 cut(s) 159, 593, 756, 1017, 1179, 1312
BsrI ACTGG 2 cut(s) 97, 829
BssECI CCNNGG 9 cut(s) 91, 295, 342, 466, 543, 789, 1026, 1092, 1233
BssMI GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
BssNI GRCGYC 2 cut(s) 332, 462
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 6 cut(s) 93, 149, 244, 296, 468, 524
Bst4CI ACNGT 3 cut(s) 109, 1353, 1366
BstACI GRCGYC 2 cut(s) 332, 462
BstAPI GCANNNNNTGC 1 cut(s) 595
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 16, 256, 747, 1416
BstDEI CTNAG 8 cut(s) 504, 642, 720, 741, 771, 1032, 1044, 1077
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 5 cut(s) 229, 858, 979, 1209, 1407
BstFNI CGCG 1 cut(s) 321
BstH2I RGCGCY 2 cut(s) 21, 162
BstHHI GCGC 5 cut(s) 20, 161, 781, 802, 1120
BstKTI GATC 7 cut(s) 39, 69, 405, 534, 633, 1194, 1227
BstMAI GTCTC 2 cut(s) 308, 617
BstMBI GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
BstNI CCWGG 6 cut(s) 93, 149, 244, 296, 468, 524
BstPAI GACNNNNGTC 2 cut(s) 320, 689
BstSCI CCNGG 7 cut(s) 91, 147, 242, 294, 466, 522, 1232
BstSLI GKGCMC 1 cut(s) 1409
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 7 cut(s) 245, 502, 592, 1009, 1031, 1042, 1374
BstV2I GAAGAC 2 cut(s) 506, 689
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 830
BtrI CACGTC 2 cut(s) 280, 538
BtsCI GGATG 5 cut(s) 229, 858, 979, 1209, 1407
BtsIMutI CAGTG 1 cut(s) 860
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 4 cut(s) 16, 256, 747, 1416
CfoI GCGC 5 cut(s) 20, 161, 781, 802, 1120
Cfr13I GGNCC 4 cut(s) 45, 203, 363, 826
CseI GACGC 2 cut(s) 310, 321
Csp6I GTAC 1 cut(s) 86
CviAII CATG 3 cut(s) 81, 220, 343
CviQI GTAC 1 cut(s) 86
DdeI CTNAG 8 cut(s) 504, 642, 720, 741, 771, 1032, 1044, 1077
DpnI GATC 7 cut(s) 38, 68, 404, 533, 632, 1193, 1226
DpnII GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
EaeI YGGCCR 3 cut(s) 94, 540, 786
EciI GGCGGA 2 cut(s) 986, 1296
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 363
Eco47III AGCGCT 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 83, 1235
Eco88I CYCGRG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 409
EcoRII CCWGG 6 cut(s) 91, 147, 242, 294, 466, 522
EcoT14I CCWWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 3 cut(s) 84, 223, 346
FaqI GGGAC 4 cut(s) 376, 449, 1110, 1193
FatI CATG 3 cut(s) 80, 219, 342
FbaI TGATCA 2 cut(s) 36, 1191
FokI GGATG 5 cut(s) 236, 865, 986, 1216, 1414
FriOI GRGCYC 1 cut(s) 411
FspBI CTAG 2 cut(s) 15, 1221
GlaI GCGC 5 cut(s) 19, 160, 780, 801, 1119
GsaI CCCAGC 1 cut(s) 1332
HaeII RGCGCY 2 cut(s) 21, 162
HapII CCGG 4 cut(s) 48, 125, 1233, 1293
HgaI GACGC 2 cut(s) 310, 321
HhaI GCGC 5 cut(s) 20, 161, 781, 802, 1120
Hin1I GRCGYC 2 cut(s) 332, 462
Hin1II CATG 3 cut(s) 84, 223, 346
Hin6I GCGC 5 cut(s) 18, 159, 779, 800, 1118
HinP1I GCGC 5 cut(s) 18, 159, 779, 800, 1118
HinfI GANTC 7 cut(s) 51, 316, 502, 617, 640, 979, 1148
HpaII CCGG 4 cut(s) 48, 125, 1233, 1293
HphI GGTGA 4 cut(s) 46, 139, 323, 691
Hpy166II GTNNAC 3 cut(s) 130, 460, 700
Hpy188I TCNGA 5 cut(s) 25, 402, 507, 622, 645
Hpy188III TCNNGA 4 cut(s) 932, 1186, 1211, 1360
Hpy8I GTNNAC 3 cut(s) 130, 460, 700
Hpy99I CGWCG 4 cut(s) 218, 284, 337, 539
HpyAV CCTTC 7 cut(s) 70, 644, 658, 751, 799, 814, 1312
HpyCH4III ACNGT 3 cut(s) 109, 1353, 1366
HpyCH4IV ACGT 3 cut(s) 279, 462, 537
HpyCH4V TGCA 6 cut(s) 440, 598, 835, 860, 1137, 1369
HpyF3I CTNAG 8 cut(s) 504, 642, 720, 741, 771, 1032, 1044, 1077
HpySE526I ACGT 3 cut(s) 279, 462, 537
Hsp92I GRCGYC 2 cut(s) 332, 462
Hsp92II CATG 3 cut(s) 84, 223, 346
HspAI GCGC 5 cut(s) 18, 159, 779, 800, 1118
Ksp22I TGATCA 2 cut(s) 36, 1191
Kzo9I GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
LmnI GCTCC 4 cut(s) 174, 252, 286, 575
Lsp1109I GCAGC 7 cut(s) 245, 502, 592, 1009, 1031, 1042, 1374
LweI GCATC 3 cut(s) 214, 309, 964
MaeI CTAG 2 cut(s) 15, 1221
MaeII ACGT 3 cut(s) 279, 462, 537
MaeIII GTNAC 1 cut(s) 485
MalI GATC 7 cut(s) 38, 68, 404, 533, 632, 1193, 1226
MboI GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
MboII GAAGA 7 cut(s) 76, 511, 640, 673, 694, 766, 1093
MhlI GDGCHC 2 cut(s) 411, 1409
MlsI TGGCCA 1 cut(s) 96
MluCI AATT 3 cut(s) 940, 1396, 1423
MluNI TGGCCA 1 cut(s) 96
MlyI GAGTC 4 cut(s) 310, 496, 634, 1142
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MseI TTAA 2 cut(s) 447, 675
MslI CAYNNNNRTG 1 cut(s) 1142
Msp20I TGGCCA 1 cut(s) 96
MspA1I CMGCKG 3 cut(s) 258, 1022, 1328
MspI CCGG 4 cut(s) 48, 125, 1233, 1293
MspR9I CCNGG 7 cut(s) 93, 149, 244, 296, 468, 524, 1234
Mva1269I GAATGC 2 cut(s) 862, 1389
MvaI CCWGG 6 cut(s) 93, 149, 244, 296, 468, 524
MvnI CGCG 1 cut(s) 321
NciI CCSGG 1 cut(s) 1234
NcoI CCATGG 1 cut(s) 342
NdeII GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
NheI GCTAGC 1 cut(s) 14
NlaIII CATG 3 cut(s) 84, 223, 346
NlaIV GGNNCC 4 cut(s) 46, 248, 364, 571
NmeAIII GCCGAG 6 cut(s) 187, 568, 814, 913, 1051, 1117
NspV TTCGAA 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 207
PaqCI CACCTGC 1 cut(s) 772
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 540
PctI GAATGC 2 cut(s) 862, 1389
PfeI GAWTC 3 cut(s) 51, 617, 979
PleI GAGTC 4 cut(s) 310, 496, 634, 1142
PpsI GAGTC 4 cut(s) 310, 496, 634, 1142
PshAI GACNNNNGTC 2 cut(s) 320, 689
PsiI TTATAA 1 cut(s) 1338
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 6 cut(s) 91, 147, 242, 294, 466, 522
PspFI CCCAGC 1 cut(s) 1328
PspGI CCWGG 6 cut(s) 91, 147, 242, 294, 466, 522
PspN4I GGNNCC 4 cut(s) 46, 248, 364, 571
PspPI GGNCC 4 cut(s) 45, 203, 363, 826
PspXI VCTCGAGB 1 cut(s) 207
PvuII CAGCTG 2 cut(s) 258, 1022
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 1142
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 2 cut(s) 447, 675
Sau3AI GATC 7 cut(s) 36, 66, 402, 531, 630, 1191, 1224
Sau96I GGNCC 4 cut(s) 45, 203, 363, 826
SchI GAGTC 4 cut(s) 310, 496, 634, 1142
ScrFI CCNGG 7 cut(s) 93, 149, 244, 296, 468, 524, 1234
SduI GDGCHC 2 cut(s) 411, 1409
SfaNI GCATC 3 cut(s) 214, 309, 964
Sfr274I CTCGAG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 363
SlaI CTCGAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 1142
SmlI CTYRAG 3 cut(s) 207, 881, 930
SmoI CTYRAG 3 cut(s) 207, 881, 930
Sse9I AATT 3 cut(s) 940, 1396, 1423
SsiI CCGC 9 cut(s) 809, 968, 971, 1238, 1281, 1302, 1310, 1326, 1391
SspMI CTAG 2 cut(s) 15, 1221
SstI GAGCTC 1 cut(s) 411
StyD4I CCNGG 7 cut(s) 91, 147, 242, 294, 466, 522, 1232
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 3 cut(s) 109, 1353, 1366
TaiI ACGT 3 cut(s) 282, 465, 540
TaqI TCGA 9 cut(s) 141, 208, 272, 282, 306, 335, 390, 405, 534
TaqII GACCGA 1 cut(s) 887
TasI AATT 3 cut(s) 940, 1396, 1423
TauI GCSGC 5 cut(s) 971, 1305, 1313, 1328, 1393
TfiI GAWTC 3 cut(s) 51, 617, 979
Tru1I TTAA 2 cut(s) 447, 675
Tru9I TTAA 2 cut(s) 447, 675
TscAI CASTG 1 cut(s) 867
TseI GCWGC 7 cut(s) 258, 515, 605, 1019, 1022, 1055, 1387
TspDTI ATGAA 5 cut(s) 569, 767, 833, 869, 1331
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 1 cut(s) 867
VpaK11BI GGWCC 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 207
XspI CTAG 2 cut(s) 15, 1221
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.