PHD-finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 FvH4_2g28350 |
| malus_domestica | MD15G1130200.v1.1 |
| prunus_persica | Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 Prupe.1G485700_v2.0.a1 |
| pyrus_communis | pycom15g11740 |
| rosa_chinensis | RchiOBHm_Chr1g0356281 RchiOBHm_Chr4g0425611 RchiOBHm_Chr6g0297291 |
| rosa_laevigata | RLG00000011614 |
| rosa_multiflora | Rmu_co8471549.1_g000001 Rmu_sc0004535.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00306840 Rroxscaffold_7G00170680 |
| rosa_rugosa | Rorug06G0270300 Rorug06G0270400 Rorug06G0270500 |
| rosa_samantha | Rh6AG381800 Rh6BG389800 Rh6CG395000 Rh6DG381700 |
| rosa_wichuraiana | Rw6G033260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 426, 2452, 2774 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 40 |
| AatII | GACGTC | 1 cut(s) | 876 |
| Acc16I | TGCGCA | 1 cut(s) | 3971 |
| Acc36I | ACCTGC | 3 cut(s) | 426, 2452, 2774 |
| Acc65I | GGTACC | 2 cut(s) | 305, 353 |
| AccB1I | GGYRCC | 7 cut(s) | 305, 353, 1484, 4034, 4761, 4976, 5253 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 706, 4031 |
| AccBSI | CCGCTC | 2 cut(s) | 585, 6109 |
| AccI | GTMKAC | 1 cut(s) | 5353 |
| AccII | CGCG | 1 cut(s) | 6104 |
| AclI | AACGTT | 1 cut(s) | 1455 |
| AclWI | GGATC | 5 cut(s) | 155, 2174, 2362, 4616, 4629 |
| AcoI | YGGCCR | 4 cut(s) | 519, 1687, 2967, 5509 |
| AcyI | GRCGYC | 1 cut(s) | 873 |
| AfeI | AGCGCT | 3 cut(s) | 607, 4992, 5956 |
| AflII | CTTAAG | 2 cut(s) | 1489, 3623 |
| AflIII | ACRYGT | 5 cut(s) | 533, 816, 2028, 3752, 5832 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3481 |
| AhlI | ACTAGT | 3 cut(s) | 749, 1982, 3293 |
| AjiI | CACGTC | 2 cut(s) | 3753, 5835 |
| AjnI | CCWGG | 9 cut(s) | 516, 1824, 1830, 2547, 2704, 3393, 4270, 4384, 5242 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2574, 2606, 4698, 4730 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 5628, 5660 |
| Alw21I | GWGCWC | 5 cut(s) | 11, 1980, 4451, 5299, 5404 |
| Alw44I | GTGCAC | 1 cut(s) | 5295 |
| AlwI | GGATC | 5 cut(s) | 155, 2174, 2362, 4616, 4629 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 995 |
| Ama87I | CYCGRG | 1 cut(s) | 865 |
| Aor51HI | AGCGCT | 3 cut(s) | 607, 4992, 5956 |
| ApaLI | GTGCAC | 1 cut(s) | 5295 |
| AseI | ATTAAT | 1 cut(s) | 5679 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2266 |
| Asp718I | GGTACC | 2 cut(s) | 305, 353 |
| AspLEI | GCGC | 7 cut(s) | 608, 1111, 3972, 4993, 5558, 5957, 6213 |
| AsuC2I | CCSGG | 5 cut(s) | 866, 867, 951, 1993, 6123 |
| AsuII | TTCGAA | 1 cut(s) | 3338 |
| AsuNHI | GCTAGC | 1 cut(s) | 2711 |
| AvaI | CYCGRG | 1 cut(s) | 865 |
| AvaII | GGWCC | 7 cut(s) | 514, 1828, 2249, 3235, 3767, 4342, 4929 |
| AxyI | CCTNAGG | 1 cut(s) | 5649 |
| BaeGI | GKGCMC | 3 cut(s) | 1274, 5258, 5299 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2403, 2436, 3282, 3315 |
| BalI | TGGCCA | 3 cut(s) | 521, 1689, 5511 |
| BamHI | GGATCC | 1 cut(s) | 4621 |
| BanI | GGYRCC | 7 cut(s) | 305, 353, 1484, 4034, 4761, 4976, 5253 |
| BanII | GRGCYC | 3 cut(s) | 11, 572, 1980 |
| BauI | CACGAG | 2 cut(s) | 10, 729 |
| BbsI | GAAGAC | 2 cut(s) | 3271, 3927 |
| Bbv12I | GWGCWC | 5 cut(s) | 11, 1980, 4451, 5299, 5404 |
| BbvCI | CCTCAGC | 3 cut(s) | 1520, 5122, 5433 |
| BccI | CCATC | 9 cut(s) | 76, 1094, 1307, 1475, 1733, 2372, 3319, 3865, 5585 |
| BceAI | ACGGC | 1 cut(s) | 5565 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5726, 5760 |
| BciT130I | CCWGG | 9 cut(s) | 518, 1826, 1832, 2549, 2706, 3395, 4272, 4386, 5244 |
| BcnI | CCSGG | 5 cut(s) | 866, 867, 951, 1993, 6123 |
| BcuI | ACTAGT | 3 cut(s) | 749, 1982, 3293 |
| BfmI | CTRYAG | 7 cut(s) | 503, 609, 1666, 2047, 2716, 2956, 4164 |
| BfoI | RGCGCY | 4 cut(s) | 609, 4994, 5958, 6214 |
| BfrI | CTTAAG | 2 cut(s) | 1489, 3623 |
| BfuAI | ACCTGC | 3 cut(s) | 426, 2452, 2774 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1004 |
| Bme18I | GGWCC | 7 cut(s) | 514, 1828, 2249, 3235, 3767, 4342, 4929 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3481 |
| BmeT110I | CYCGRG | 1 cut(s) | 865 |
| BmgBI | CACGTC | 2 cut(s) | 3753, 5835 |
| BmrI | ACTGGG | 2 cut(s) | 901, 3729 |
| BmtI | GCTAGC | 1 cut(s) | 2715 |
| BmuI | ACTGGG | 2 cut(s) | 901, 3729 |
| BpiI | GAAGAC | 2 cut(s) | 3271, 3927 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2852, 2884, 3695, 3727, 4469, 4501 |
| BpmI | CTGGAG | 6 cut(s) | 454, 1089, 2490, 2549, 4293, 4859 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1520, 4307, 5122, 5433 |
| Bpu14I | TTCGAA | 1 cut(s) | 3338 |
| BpuEI | CTTGAG | 5 cut(s) | 601, 1190, 2131, 3583, 4971 |
| BpuMI | CCSGG | 5 cut(s) | 866, 867, 951, 1993, 6123 |
| BsaAI | YACGTR | 1 cut(s) | 3956 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2826, 4356 |
| BsaHI | GRCGYC | 1 cut(s) | 873 |
| BsaI | GGTCTC | 2 cut(s) | 550, 890 |
| BsaWI | WCCGGW | 1 cut(s) | 356 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 26, 3640, 3670, 5871, 5901 |
| Bse118I | RCCGGY | 1 cut(s) | 3382 |
| Bse21I | CCTNAGG | 1 cut(s) | 5649 |
| Bse3DI | GCAATG | 5 cut(s) | 97, 900, 4763, 5110, 5216 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2826, 4356 |
| BseBI | CCWGG | 9 cut(s) | 518, 1826, 1832, 2549, 2706, 3395, 4272, 4386, 5244 |
| BseJI | GATNNNNATC | 2 cut(s) | 2826, 4356 |
| BseMI | GCAATG | 5 cut(s) | 97, 900, 4763, 5110, 5216 |
| BseSI | GKGCMC | 3 cut(s) | 1274, 5258, 5299 |
| BseYI | CCCAGC | 5 cut(s) | 1724, 3440, 3670, 3674, 4625 |
| BsgI | GTGCAG | 1 cut(s) | 5380 |
| Bsh1236I | CGCG | 1 cut(s) | 6104 |
| BshNI | GGYRCC | 7 cut(s) | 305, 353, 1484, 4034, 4761, 4976, 5253 |
| BsiHKAI | GWGCWC | 5 cut(s) | 11, 1980, 4451, 5299, 5404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 865 |
| BsiSI | CCGG | 7 cut(s) | 357, 866, 950, 1993, 3383, 4927, 6123 |
| BslFI | GGGAC | 7 cut(s) | 446, 884, 983, 3741, 4328, 5501, 6125 |
| BsmBI | CGTCTC | 1 cut(s) | 5841 |
| BsmFI | GGGAC | 7 cut(s) | 446, 884, 983, 3741, 4328, 5501, 6125 |
| BsmI | GAATGC | 4 cut(s) | 177, 841, 2394, 4787 |
| Bso31I | GGTCTC | 2 cut(s) | 550, 890 |
| BsoBI | CYCGRG | 1 cut(s) | 865 |
| Bsp119I | TTCGAA | 1 cut(s) | 3338 |
| Bsp1286I | GDGCHC | 8 cut(s) | 11, 572, 1274, 1980, 4451, 5258, 5299, 5404 |
| Bsp1407I | TGTACA | 2 cut(s) | 1156, 5799 |
| Bsp19I | CCATGG | 2 cut(s) | 3049, 4425 |
| BspFNI | CGCG | 1 cut(s) | 6104 |
| BspMAI | CTGCAG | 4 cut(s) | 507, 613, 1670, 2960 |
| BspMI | ACCTGC | 3 cut(s) | 426, 2452, 2774 |
| BspOI | GCTAGC | 1 cut(s) | 2715 |
| BspPI | GGATC | 5 cut(s) | 155, 2174, 2362, 4616, 4629 |
| BspQI | GCTCTTC | 1 cut(s) | 2605 |
| BspT104I | TTCGAA | 1 cut(s) | 3338 |
| BspT107I | GGYRCC | 7 cut(s) | 305, 353, 1484, 4034, 4761, 4976, 5253 |
| BspTI | CTTAAG | 2 cut(s) | 1489, 3623 |
| BspTNI | GGTCTC | 2 cut(s) | 550, 890 |
| BsrBI | CCGCTC | 2 cut(s) | 585, 6109 |
| BsrDI | GCAATG | 5 cut(s) | 97, 900, 4763, 5110, 5216 |
| BsrFI | RCCGGY | 1 cut(s) | 3382 |
| BsrGI | TGTACA | 2 cut(s) | 1156, 5799 |
| BssAI | RCCGGY | 1 cut(s) | 3382 |
| BssNAI | GTATAC | 1 cut(s) | 5354 |
| BssNI | GRCGYC | 1 cut(s) | 873 |
| BssSI | CACGAG | 2 cut(s) | 10, 729 |
| BssT1I | CCWWGG | 5 cut(s) | 522, 3049, 4425, 5393, 5821 |
| Bst1107I | GTATAC | 1 cut(s) | 5354 |
| Bst2BI | CACGAG | 2 cut(s) | 10, 729 |
| Bst2UI | CCWGG | 9 cut(s) | 518, 1826, 1832, 2549, 2706, 3395, 4272, 4386, 5244 |
| Bst6I | CTCTTC | 3 cut(s) | 1701, 2605, 6123 |
| BstACI | GRCGYC | 1 cut(s) | 873 |
| BstAFI | CTTAAG | 2 cut(s) | 1489, 3623 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 418, 1933, 4923 |
| BstAUI | TGTACA | 2 cut(s) | 1156, 5799 |
| BstBAI | YACGTR | 1 cut(s) | 3956 |
| BstBI | TTCGAA | 1 cut(s) | 3338 |
| BstDSI | CCRYGG | 3 cut(s) | 1756, 3049, 4425 |
| BstENI | CCTNNNNNAGG | 4 cut(s) | 521, 1829, 2105, 4310 |
| BstFNI | CGCG | 1 cut(s) | 6104 |
| BstH2I | RGCGCY | 4 cut(s) | 609, 4994, 5958, 6214 |
| BstHHI | GCGC | 7 cut(s) | 608, 1111, 3972, 4993, 5558, 5957, 6213 |
| BstNI | CCWGG | 9 cut(s) | 518, 1826, 1832, 2549, 2706, 3395, 4272, 4386, 5244 |
| BstSFI | CTRYAG | 7 cut(s) | 503, 609, 1666, 2047, 2716, 2956, 4164 |
| BstSLI | GKGCMC | 3 cut(s) | 1274, 5258, 5299 |
| BstUI | CGCG | 1 cut(s) | 6104 |
| BstV2I | GAAGAC | 2 cut(s) | 3271, 3927 |
| BstX2I | RGATCY | 3 cut(s) | 160, 2354, 4621 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2231, 4700 |
| BstYI | RGATCY | 3 cut(s) | 160, 2354, 4621 |
| BstZ17I | GTATAC | 1 cut(s) | 5354 |
| Bsu36I | CCTNAGG | 1 cut(s) | 5649 |
| BtgI | CCRYGG | 3 cut(s) | 1756, 3049, 4425 |
| BtrI | CACGTC | 2 cut(s) | 3753, 5835 |
| BtsI | GCAGTG | 4 cut(s) | 1675, 2182, 5635, 5860 |
| BveI | ACCTGC | 3 cut(s) | 426, 2452, 2774 |
| CaiI | CAGNNNCTG | 1 cut(s) | 995 |
| CfoI | GCGC | 7 cut(s) | 608, 1111, 3972, 4993, 5558, 5957, 6213 |
| Cfr10I | RCCGGY | 1 cut(s) | 3382 |
| Cfr9I | CCCGGG | 1 cut(s) | 865 |
| CseI | GACGC | 2 cut(s) | 308, 6043 |
| CsiI | ACCWGGT | 2 cut(s) | 1824, 2704 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 127, 162, 1581, 1616 |
| DraI | TTTAAA | 1 cut(s) | 3591 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 40 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3481 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 40 |
| EaeI | YGGCCR | 4 cut(s) | 519, 1687, 2967, 5509 |
| Eam1104I | CTCTTC | 3 cut(s) | 1701, 2605, 6123 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3481 |
| EarI | CTCTTC | 3 cut(s) | 1701, 2605, 6123 |
| EciI | GGCGGA | 1 cut(s) | 441 |
| Ecl136II | GAGCTC | 2 cut(s) | 9, 1978 |
| Eco130I | CCWWGG | 5 cut(s) | 522, 3049, 4425, 5393, 5821 |
| Eco24I | GRGCYC | 3 cut(s) | 11, 572, 1980 |
| Eco31I | GGTCTC | 2 cut(s) | 550, 890 |
| Eco47I | GGWCC | 7 cut(s) | 514, 1828, 2249, 3235, 3767, 4342, 4929 |
| Eco47III | AGCGCT | 3 cut(s) | 607, 4992, 5956 |
| Eco53kI | GAGCTC | 2 cut(s) | 9, 1978 |
| Eco81I | CCTNAGG | 1 cut(s) | 5649 |
| Eco88I | CYCGRG | 1 cut(s) | 865 |
| EcoICRI | GAGCTC | 2 cut(s) | 9, 1978 |
| EcoNI | CCTNNNNNAGG | 4 cut(s) | 521, 1829, 2105, 4310 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3767, 3888, 4342 |
| EcoRI | GAATTC | 5 cut(s) | 508, 931, 1138, 2124, 2614 |
| EcoRII | CCWGG | 9 cut(s) | 516, 1824, 1830, 2547, 2704, 3393, 4270, 4384, 5242 |
| EcoT14I | CCWWGG | 5 cut(s) | 522, 3049, 4425, 5393, 5821 |
| EcoT22I | ATGCAT | 3 cut(s) | 1771, 2396, 4789 |
| EcoT38I | GRGCYC | 3 cut(s) | 11, 572, 1980 |
| ErhI | CCWWGG | 5 cut(s) | 522, 3049, 4425, 5393, 5821 |
| Esp3I | CGTCTC | 1 cut(s) | 5841 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 556, 588, 908, 940, 1616, 1648 |
| FaqI | GGGAC | 7 cut(s) | 446, 884, 983, 3741, 4328, 5501, 6125 |
| FauI | CCCGC | 5 cut(s) | 578, 3494, 5176, 5858, 6102 |
| FauNDI | CATATG | 3 cut(s) | 1053, 5220, 6139 |
| FblI | GTMKAC | 1 cut(s) | 5353 |
| FriOI | GRGCYC | 3 cut(s) | 11, 572, 1980 |
| FspI | TGCGCA | 1 cut(s) | 3971 |
| GlaI | GCGC | 7 cut(s) | 607, 1110, 3971, 4992, 5557, 5956, 6212 |
| GsaI | CCCAGC | 5 cut(s) | 1728, 3444, 3674, 3678, 4629 |
| GsuI | CTGGAG | 6 cut(s) | 454, 1089, 2490, 2549, 4293, 4859 |
| HaeII | RGCGCY | 4 cut(s) | 609, 4994, 5958, 6214 |
| HapII | CCGG | 7 cut(s) | 357, 866, 950, 1993, 3383, 4927, 6123 |
| HgaI | GACGC | 2 cut(s) | 308, 6043 |
| HhaI | GCGC | 7 cut(s) | 608, 1111, 3972, 4993, 5558, 5957, 6213 |
| Hin1I | GRCGYC | 1 cut(s) | 873 |
| Hin6I | GCGC | 7 cut(s) | 606, 1109, 3970, 4991, 5556, 5955, 6211 |
| HinP1I | GCGC | 7 cut(s) | 606, 1109, 3970, 4991, 5556, 5955, 6211 |
| HindIII | AAGCTT | 4 cut(s) | 3947, 4712, 5028, 5939 |
| HpaI | GTTAAC | 3 cut(s) | 2466, 2761, 3412 |
| HpaII | CCGG | 7 cut(s) | 357, 866, 950, 1993, 3383, 4927, 6123 |
| Hpy99I | CGWCG | 2 cut(s) | 878, 6059 |
| HpyCH4IV | ACGT | 9 cut(s) | 873, 1338, 1455, 1588, 3752, 3955, 4513, 5587, 5834 |
| HpySE526I | ACGT | 9 cut(s) | 873, 1338, 1455, 1588, 3752, 3955, 4513, 5587, 5834 |
| Hsp92I | GRCGYC | 1 cut(s) | 873 |
| HspAI | GCGC | 7 cut(s) | 606, 1109, 3970, 4991, 5556, 5955, 6211 |
| KpnI | GGTACC | 2 cut(s) | 309, 357 |
| KroI | GCCGGC | 1 cut(s) | 3382 |
| KroNI | GCCGGC | 1 cut(s) | 3384 |
| KspAI | GTTAAC | 3 cut(s) | 2466, 2761, 3412 |
| LguI | GCTCTTC | 1 cut(s) | 2605 |
| LmnI | GCTCC | 9 cut(s) | 67, 428, 473, 641, 1873, 3633, 4454, 5653, 6106 |
| MabI | ACCWGGT | 2 cut(s) | 1824, 2704 |
| MaeII | ACGT | 9 cut(s) | 873, 1338, 1455, 1588, 3752, 3955, 4513, 5587, 5834 |
| MbiI | CCGCTC | 2 cut(s) | 585, 6109 |
| MfeI | CAATTG | 4 cut(s) | 1816, 2021, 3402, 4556 |
| MflI | RGATCY | 3 cut(s) | 160, 2354, 4621 |
| MhlI | GDGCHC | 8 cut(s) | 11, 572, 1274, 1980, 4451, 5258, 5299, 5404 |
| MlsI | TGGCCA | 3 cut(s) | 521, 1689, 5511 |
| MluNI | TGGCCA | 3 cut(s) | 521, 1689, 5511 |
| MlyI | GAGTC | 8 cut(s) | 1352, 2391, 2440, 3704, 3892, 4713, 4978, 5233 |
| MmeI | TCCRAC | 4 cut(s) | 766, 2677, 2986, 5726 |
| Mox20I | TGGCCA | 3 cut(s) | 521, 1689, 5511 |
| Mph1103I | ATGCAT | 3 cut(s) | 1771, 2396, 4789 |
| MroNI | GCCGGC | 1 cut(s) | 3382 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2266 |
| MscI | TGGCCA | 3 cut(s) | 521, 1689, 5511 |
| MslI | CAYNNNNRTG | 4 cut(s) | 3081, 3309, 5679, 6162 |
| Msp20I | TGGCCA | 3 cut(s) | 521, 1689, 5511 |
| MspA1I | CMGCKG | 8 cut(s) | 1090, 1583, 2211, 2955, 3674, 4195, 5126, 5183 |
| MspCI | CTTAAG | 2 cut(s) | 1489, 3623 |
| MspI | CCGG | 7 cut(s) | 357, 866, 950, 1993, 3383, 4927, 6123 |
| MunI | CAATTG | 4 cut(s) | 1816, 2021, 3402, 4556 |
| Mva1269I | GAATGC | 4 cut(s) | 177, 841, 2394, 4787 |
| MvaI | CCWGG | 9 cut(s) | 518, 1826, 1832, 2549, 2706, 3395, 4272, 4386, 5244 |
| MvnI | CGCG | 1 cut(s) | 6104 |
| NaeI | GCCGGC | 1 cut(s) | 3384 |
| NciI | CCSGG | 5 cut(s) | 866, 867, 951, 1993, 6123 |
| NcoI | CCATGG | 2 cut(s) | 3049, 4425 |
| NdeI | CATATG | 3 cut(s) | 1053, 5220, 6139 |
| NgoMIV | GCCGGC | 1 cut(s) | 3382 |
| NheI | GCTAGC | 1 cut(s) | 2711 |
| NmuCI | GTSAC | 7 cut(s) | 249, 373, 529, 536, 1018, 2683, 5000 |
| NsbI | TGCGCA | 1 cut(s) | 3971 |
| NsiI | ATGCAT | 3 cut(s) | 1771, 2396, 4789 |
| NspV | TTCGAA | 1 cut(s) | 3338 |
| PaeI | GCATGC | 2 cut(s) | 1931, 5056 |
| PaqCI | CACCTGC | 3 cut(s) | 426, 2452, 2774 |
| PciI | ACATGT | 3 cut(s) | 533, 816, 2028 |
| PciSI | GCTCTTC | 1 cut(s) | 2605 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 38 |
| PctI | GAATGC | 4 cut(s) | 177, 841, 2394, 4787 |
| PdiI | GCCGGC | 1 cut(s) | 3384 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2266 |
| PflFI | GACNNNGTC | 2 cut(s) | 542, 3901 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 706, 4031 |
| PfoI | TCCNGGA | 3 cut(s) | 949, 1830, 5242 |
| PleI | GAGTC | 8 cut(s) | 1351, 2390, 2439, 3704, 3892, 4713, 4978, 5233 |
| PpsI | GAGTC | 8 cut(s) | 1351, 2390, 2439, 3704, 3892, 4713, 4978, 5233 |
| Ppu21I | YACGTR | 1 cut(s) | 3956 |
| PpuMI | RGGWCCY | 2 cut(s) | 3767, 4342 |
| PscI | ACATGT | 3 cut(s) | 533, 816, 2028 |
| PshBI | ATTAAT | 1 cut(s) | 5679 |
| Psp124BI | GAGCTC | 2 cut(s) | 11, 1980 |
| Psp1406I | AACGTT | 1 cut(s) | 1455 |
| Psp5II | RGGWCCY | 2 cut(s) | 3767, 4342 |
| Psp6I | CCWGG | 9 cut(s) | 516, 1824, 1830, 2547, 2704, 3393, 4270, 4384, 5242 |
| PspFI | CCCAGC | 5 cut(s) | 1724, 3440, 3670, 3674, 4625 |
| PspGI | CCWGG | 9 cut(s) | 516, 1824, 1830, 2547, 2704, 3393, 4270, 4384, 5242 |
| PspPPI | RGGWCCY | 2 cut(s) | 3767, 4342 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4837, 4869 |
| PstI | CTGCAG | 4 cut(s) | 507, 613, 1670, 2960 |
| PstNI | CAGNNNCTG | 1 cut(s) | 995 |
| PsuI | RGATCY | 3 cut(s) | 160, 2354, 4621 |
| PsyI | GACNNNGTC | 2 cut(s) | 542, 3901 |
| PvuII | CAGCTG | 6 cut(s) | 1583, 2211, 2955, 3674, 4195, 5126 |
| RseI | CAYNNNNRTG | 4 cut(s) | 3081, 3309, 5679, 6162 |
| SacI | GAGCTC | 2 cut(s) | 11, 1980 |
| SapI | GCTCTTC | 1 cut(s) | 2605 |
| SchI | GAGTC | 8 cut(s) | 1352, 2391, 2440, 3704, 3892, 4713, 4978, 5233 |
| SduI | GDGCHC | 8 cut(s) | 11, 572, 1274, 1980, 4451, 5258, 5299, 5404 |
| SexAI | ACCWGGT | 2 cut(s) | 1824, 2704 |
| SfcI | CTRYAG | 7 cut(s) | 503, 609, 1666, 2047, 2716, 2956, 4164 |
| SfuI | TTCGAA | 1 cut(s) | 3338 |
| SinI | GGWCC | 7 cut(s) | 514, 1828, 2249, 3235, 3767, 4342, 4929 |
| SmaI | CCCGGG | 1 cut(s) | 867 |
| SmiI | ATTTAAAT | 1 cut(s) | 3591 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 3081, 3309, 5679, 6162 |
| SmlI | CTYRAG | 7 cut(s) | 580, 1205, 1489, 2146, 3562, 3623, 4986 |
| SmoI | CTYRAG | 7 cut(s) | 580, 1205, 1489, 2146, 3562, 3623, 4986 |
| SpeI | ACTAGT | 3 cut(s) | 749, 1982, 3293 |
| SphI | GCATGC | 2 cut(s) | 1931, 5056 |
| SspI | AATATT | 5 cut(s) | 649, 1513, 3361, 4945, 5455 |
| SstI | GAGCTC | 2 cut(s) | 11, 1980 |
| StyI | CCWWGG | 5 cut(s) | 522, 3049, 4425, 5393, 5821 |
| SwaI | ATTTAAAT | 1 cut(s) | 3591 |
| TaiI | ACGT | 9 cut(s) | 876, 1341, 1458, 1591, 3755, 3958, 4516, 5590, 5837 |
| TaqI | TCGA | 5 cut(s) | 32, 2537, 2575, 3338, 4103 |
| TaqII | GACCGA | 1 cut(s) | 4240 |
| TatI | WGTACW | 6 cut(s) | 166, 1156, 1940, 2197, 5799, 5946 |
| TauI | GCSGC | 1 cut(s) | 2969 |
| TseFI | GTSAC | 7 cut(s) | 249, 373, 529, 536, 1018, 2683, 5000 |
| Tsp45I | GTSAC | 7 cut(s) | 249, 373, 529, 536, 1018, 2683, 5000 |
| TspGWI | ACGGA | 2 cut(s) | 171, 3819 |
| TspMI | CCCGGG | 1 cut(s) | 865 |
| Tth111I | GACNNNGTC | 2 cut(s) | 542, 3901 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 706, 4031 |
| Vha464I | CTTAAG | 2 cut(s) | 1489, 3623 |
| VneI | GTGCAC | 1 cut(s) | 5295 |
| VpaK11BI | GGWCC | 7 cut(s) | 514, 1828, 2249, 3235, 3767, 4342, 4929 |
| VspI | ATTAAT | 1 cut(s) | 5679 |
| XagI | CCTNNNNNAGG | 4 cut(s) | 521, 1829, 2105, 4310 |
| XbaI | TCTAGA | 4 cut(s) | 2258, 2453, 4328, 4750 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1822 |
| XmaI | CCCGGG | 1 cut(s) | 865 |
| XmiI | GTMKAC | 1 cut(s) | 5353 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2266 |
| ZraI | GACGTC | 1 cut(s) | 874 |
| Zsp2I | ATGCAT | 3 cut(s) | 1771, 2396, 4789 |