RchiOBHm_Chr4g0425611

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004222
Physical Location & Seq
Forward (+)
51206334 .. 51207029
696 bp
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UTR
Exon/CDS
Intron
PRQ39474

Sequence Viewer

Length: 309 bp
ATGTTGGGAGAGATTGTGGGGCAACATGTTGCTGATAAAAGGGAAAATGAATATCAATCTGGAAAAAAGCTTCAGTACAAGAGCGCATGCTACATTTTCAGGATAGACAAAGAGCACATCATTGATGCTACATGCAAAGGAGGGATTGCTCGATTTGTTAACCATTCCTGCTCGGTTGTATTTCTTGCAGAGAGGGACATTTTCCCGGGAGAAGAGATAACATATGACTACCATTTTAACCATGAGGATGAAGGTAAGAAGATTCCATGTTTTTGTAACTCAAAGAATTGCAGGCGCTACTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

102

Amino Acids

11.88

Weight (kDa)

6.94

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 5 - 77 6.1e-10 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 304
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 205
AspLEI GCGC 2 cut(s) 86, 297
AsuC2I CCSGG 2 cut(s) 206, 207
AvaI CYCGRG 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 117
BcnI CCSGG 2 cut(s) 206, 207
BfoI RGCGCY 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 206, 207
BmeT110I CYCGRG 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 206, 207
BmsI GCATC 1 cut(s) 115
BpuMI CCSGG 2 cut(s) 206, 207
BsaJI CCNNGG 1 cut(s) 205
BsaXI ACNNNNNCTCC 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 206
BslFI GGGAC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 205
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 88, 293
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 2 cut(s) 86, 297
BstNSI RCATGY 3 cut(s) 29, 90, 135
BstSCI CCNGG 2 cut(s) 204, 205
BtsCI GGATG 1 cut(s) 253
Cac8I GCNNGC 2 cut(s) 88, 293
CfoI GCGC 2 cut(s) 86, 297
Cfr9I CCCGGG 1 cut(s) 205
Csp6I GTAC 1 cut(s) 76
CviAII CATG 5 cut(s) 26, 87, 132, 242, 267
CviJI RGCY 1 cut(s) 70
CviKI_1 RGCY 1 cut(s) 70
CviQI GTAC 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 205
FaeI CATG 5 cut(s) 29, 90, 135, 245, 270
FaiI YATR 7 cut(s) 27, 88, 133, 223, 225, 243, 268
FaqI GGGAC 1 cut(s) 209
FatI CATG 5 cut(s) 25, 86, 131, 241, 266
FauNDI CATATG 1 cut(s) 223
FokI GGATG 1 cut(s) 260
GlaI GCGC 2 cut(s) 85, 296
HaeII RGCGCY 1 cut(s) 298
HapII CCGG 1 cut(s) 206
HhaI GCGC 2 cut(s) 86, 297
Hin1II CATG 5 cut(s) 29, 90, 135, 245, 270
Hin6I GCGC 2 cut(s) 84, 295
HinP1I GCGC 2 cut(s) 84, 295
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 1 cut(s) 262
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 160
Hpy188III TCNNGA 2 cut(s) 60, 100
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 245
HpyCH4V TGCA 3 cut(s) 135, 188, 291
Hsp92II CATG 5 cut(s) 29, 90, 135, 245, 270
HspAI GCGC 2 cut(s) 84, 295
KspAI GTTAAC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 45, 85, 181, 219, 277
LweI GCATC 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 275
MboII GAAGA 2 cut(s) 224, 271
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 286, 304
MnlI CCTC 3 cut(s) 134, 186, 238
MseI TTAA 2 cut(s) 159, 237
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 206, 207
NciI CCSGG 2 cut(s) 206, 207
NdeI CATATG 1 cut(s) 223
NlaIII CATG 5 cut(s) 29, 90, 135, 245, 270
NspI RCATGY 3 cut(s) 29, 90, 135
PaeI GCATGC 1 cut(s) 90
PciI ACATGT 1 cut(s) 25
PfeI GAWTC 1 cut(s) 262
PscI ACATGT 1 cut(s) 25
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 2 cut(s) 159, 237
ScrFI CCNGG 2 cut(s) 206, 207
SduI GDGCHC 1 cut(s) 117
SetI ASST 2 cut(s) 72, 256
SfaNI GCATC 1 cut(s) 115
SmaI CCCGGG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 246
SphI GCATGC 1 cut(s) 90
Sse9I AATT 2 cut(s) 286, 304
StyD4I CCNGG 2 cut(s) 204, 205
TaqI TCGA 1 cut(s) 151
TasI AATT 2 cut(s) 286, 304
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 159, 237
Tru9I TTAA 2 cut(s) 159, 237
TspDTI ATGAA 2 cut(s) 63, 264
TspMI CCCGGG 1 cut(s) 205
XceI RCATGY 3 cut(s) 29, 90, 135
XmaI CCCGGG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.