Rroxscaffold_7G00170680

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004222
Physical Location & Seq
Reverse (-)
11070343 .. 11082649
12307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170680.1

Sequence Viewer

Length: 2610 bp
ATGGAGAACTGGTGGATGAACAAATGTAATTCGACATTGCCTTCAATAGCTTCGTCGTCTTCTCAGGAGCTTCGGAATCAGATGGAGAATGCAGGCTATTTTCCTTGTCCGCATGGCTCACAAGATTTGAGACCGGCGATGCTTGGTAGGTTGCAGGATCCTCTGCTTTCCAGCATCCACAGATCAGAACATGTTAATTTGGGAAATTCTTTTCTGTCTCTCCTATCTGGGTCGCCATCACTATTGCAGCGTGATTTTCAAGATTTCTCAAATTCCCAACCTATTGGTACCTCTGGTAAAATTCTACCCGAGGGTAATAATTCCATTCTAAACGGTACTCAAAATGCCATCCCATTGTCATCCACCGGGCTACCATCAGAAAAGTTGAGTTGGAAAAATCTGCAAAGTGGAGCAGACTTCTGTCCCAATGGATCATCAAAGGTAGTGCCAAGTTCCATTTGTGCCAGCAATTCTGTATTGCATGATCTGCAGAGTTCAGACCTGGCCAAGGTAGTCATCTGTCACATGGGTCCTGGTAATGAGAAACTAAAGACTTCTTATGCCTCGAGTGGGGAATGGCACAGTGCTGCTCCTGCATCTAGAGGAAATATTCAAATTTCCGAAAAAATGCCACTGGAAGCAAACACCTTCGTATCTAATCAGGCATCTAGAGTATGTCATAGCACTAGTCCTGCAGATTCTTGGAAGGCTTGTAGAGAAAATATTCATACTTCACAAAAAATACCACTGGAAGCAAACTCTTTTGTTTCTTATCAGGCATCTAGTTTATGGCATGGCGCCAGTCCTGCAGACACTGGGAAGGCTTGTAGAGCTAACATTGAATCACCAAAAATGCCAGTGGAAGCATACTCCTTTATATCTAACCAGCCACCCAGTTTTATGAATGGCTGCCCTCGTGTTTTCTGCTCAACTACTAGTGGCTATCTACTTCTTAGCAATACAGGACTTCTTGGTATTGTTTGCTCTTGCCATTCTTTCCGCATGTCTGCGTTTAAGTTTTGTGAGCATTCAGGATTATATGGTGTTAACCCAGGGGATGCCATTCACATGGACAGTGGAGAGACCATTGCTCAATGGTGCAAGCTCTATCTCTTGAAGTTTGGGATTAGGATCCCTGCAGATAAGAATGAATGGGACTGGCCTGAAGAATTATCAGCAACTGCCTGTTTGATGAAATCTAGTGTGCCTATGCCAAAGATATCCAATAGCTCGTCTGATTTGGTCTTTTCACCTGGAGGTTCAGTAAGTTCTAAACAGTCTTTTGATGGTGTTTCGCTATCAAAGAATTTTATTCCAAGCCAGAGTTTGGTTATTAGTGCTGTATCAAATAAACCTGAAAGGGCATCAGATAGACCCGAAAGGAACATTCAGGGTACTAACAACCTGTTTCTCAAGGCTTTGACTGGTACTTCACAGAGCAATTTGCATATGGCAGATAACCTGTTAATGGAGCGTGCCATGTCAACATCAAAGTTAGTTGGTAATGGAACACAAGATGGTTGTCAGTCTATTTCTGCTTATAGTGGATCTATGCACAATAGAACCTCTTCCATTGCCCACCCCACTTTACAGGAACGAAGAATCATTGGTAAAGAATCAGACTTTTGCAGAATTGAAAACACAAAGGATGGTGCCTTCCGAGATGCTGCGATTTCAAATATAGAGCTGAGGCTTGGTCAACCTTACCAGTTGGCTCAAACTTCAGGAACTCCTGATCTGTCAGCTGTAGGACCACCGCTCTTGGGCACTGTTGTAAATCCAATGAAATCTCTCTTCCCTCAACAGATGATTGCTAACAGAGCGAATTGCAGGGAAGAGGTGGAATTGGGGCAATGTGATCATTTTTCTGTGGACCCATCCAATCCCAGCAGAAATAGAGATCGGAACCAGTTAAACCATGGAATCAATGCATTTGTAATCAGGAATGCCATAGATGATGAAAGGGTAGAGAAATCCAGTAGCAGCAACCTGGGCCAGAATTCTGTGATTTCAGTTCTTACCAATCTCAAATCTCCATCTAACGAAAATAGACAATCAAAAGCCAATAACTATATGTTCAATGACAGTGGGAATACTATGAGAAATGCACTACATTCTGAACCTCTACCTGTCAAGTATGACCTGGCTACTGTCCTGCGGAGTGCAGGTAATAGTGAAAGGCAACAGGACATGTCGCACTTTGGCTCCTATAAACTAAAAGACAATGATAAAGGGCTGGGTTTTGCAGCTGATGGCTCTTACCTTGCAAAGGATTTGGGGTATAGAATACGTAAGGAAATGGAAGTTTCTAGCTCTTGCAACAGGTTGAGTGGTAATGGTGAACCTAATTTTTTAACGGCATATAGAAACAGCTGCTACTCACAGCAGTTGTCTGGTATACCACTGGGTACACCTGATTCCAGAATAAGTTCCAACTATCCGGAGAAGGTTATTTCTTTTGCAAATAGTGGGCAAGTTGATCATGTCTGCCTTCAACCCTTGGCTTCATCTATGGGATCTGGGATGAAAGGTCCTACTCAGGCAGTCTCAAAAAGGTGTTCCTGTGAGTGCATCAACCTCTTTAGCAGATCTGATACCACCTTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD_2 SET zf-HC5HC2H_2

Protein Analysis

869

Amino Acids

94.34

Weight (kDa)

7.91

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 322 - 368 5.6e-14 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2156
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 3 cut(s) 287, 797, 1652
AccB7I CCANNNNNTGG 1 cut(s) 1327
AccBSI CCGCTC 1 cut(s) 1759
AccI GTMKAC 1 cut(s) 2398
AccIII TCCGGA 1 cut(s) 2440
AciI CCGC 4 cut(s) 110, 1000, 1757, 2158
AclWI GGATC 7 cut(s) 152, 165, 439, 1126, 1139, 1555, 2524
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 6 cut(s) 205, 271, 300, 615, 1306, 1999
AcuI CTGAAG 2 cut(s) 1185, 1707
AcyI GRCGYC 1 cut(s) 798
AfaI GTAC 5 cut(s) 289, 337, 1396, 1429, 2410
AfiI CCNNNNNNNGG 6 cut(s) 508, 570, 1327, 1468, 1763, 2269
AflIII ACRYGT 2 cut(s) 190, 2190
AgsI TTSAA 9 cut(s) 45, 260, 614, 842, 1117, 1637, 1677, 2080, 2495
AhlI ACTAGT 2 cut(s) 686, 935
AjnI CCWGG 6 cut(s) 501, 532, 1051, 1252, 1989, 2142
Alw26I GTCTC 4 cut(s) 124, 222, 1076, 2551
AlwI GGATC 7 cut(s) 152, 165, 439, 1126, 1139, 1555, 2524
AlwNI CAGNNNCTG 2 cut(s) 815, 1181
Ama87I CYCGRG 2 cut(s) 308, 565
Aor13HI TCCGGA 1 cut(s) 2440
AoxI GGCC 3 cut(s) 504, 1160, 1993
ApeKI GCWGC 7 cut(s) 247, 587, 909, 1667, 1983, 2246, 2373
ApoI RAATTY 6 cut(s) 205, 271, 300, 615, 1306, 1999
Asp700I GAANNNNTTC 3 cut(s) 723, 1567, 2428
Asp718I GGTACC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 800
AspS9I GGNCC 5 cut(s) 530, 1751, 1873, 1993, 2531
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 3 cut(s) 837, 1242, 2351
AvaI CYCGRG 2 cut(s) 308, 565
AvaII GGWCC 4 cut(s) 530, 1751, 1873, 2531
BaeGI GKGCMC 1 cut(s) 1769
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BalI TGGCCA 1 cut(s) 506
BamHI GGATCC 2 cut(s) 157, 1131
BanI GGYRCC 3 cut(s) 287, 797, 1652
BauI CACGAG 1 cut(s) 915
BbsI GAAGAC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 1688
BbvI GCAGC 7 cut(s) 259, 574, 896, 1654, 1995, 2258, 2360
BceAI ACGGC 1 cut(s) 2373
BciT130I CCWGG 6 cut(s) 503, 534, 1053, 1254, 1991, 2144
BclI TGATCA 2 cut(s) 1858, 2479
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 4 cut(s) 124, 222, 1076, 2551
BcuI ACTAGT 2 cut(s) 686, 935
BfaI CTAG 7 cut(s) 600, 669, 687, 783, 936, 1200, 2310
BfmI CTRYAG 6 cut(s) 488, 693, 807, 1137, 1746, 2606
BfoI RGCGCY 1 cut(s) 801
BfuAI ACCTGC 1 cut(s) 2156
BglII AGATCT 1 cut(s) 2588
BisI GCNGC 7 cut(s) 248, 588, 910, 1668, 1984, 2247, 2374
BlsI GCNGC 7 cut(s) 249, 589, 911, 1669, 1985, 2248, 2375
Bme1390I CCNGG 7 cut(s) 367, 503, 534, 1053, 1254, 1991, 2144
Bme18I GGWCC 4 cut(s) 530, 1751, 1873, 2531
BmeT110I CYCGRG 2 cut(s) 308, 565
BmgT120I GGNCC 5 cut(s) 530, 1751, 1873, 1993, 2531
BmiI GGNNCC 9 cut(s) 159, 289, 531, 799, 1133, 1654, 1875, 1907, 2206
BmrFI CCNGG 7 cut(s) 367, 503, 534, 1053, 1254, 1991, 2144
BmrI ACTGGG 3 cut(s) 825, 888, 2414
BmsI GCATC 9 cut(s) 129, 183, 605, 674, 788, 1048, 1373, 1654, 2580
BmuI ACTGGG 3 cut(s) 825, 888, 2414
BoxI GACNNNNGTC 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 51
BpmI CTGGAG 1 cut(s) 1275
Bpu10I CCTNAGC 1 cut(s) 1688
BpuEI CTTGAG 1 cut(s) 1397
BpuMI CCSGG 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 2291
BsaBI GATNNNNATC 1 cut(s) 1130
BsaHI GRCGYC 1 cut(s) 798
BsaI GGTCTC 2 cut(s) 124, 1076
BsaJI CCNNGG 7 cut(s) 309, 507, 1051, 1052, 1918, 1990, 2499
BsaWI WCCGGW 1 cut(s) 2440
BsaXI ACNNNNNCTCC 7 cut(s) 26, 1248, 1278, 2152, 2182, 2189, 2219
Bsc4I CCNNNNNNNGG 6 cut(s) 508, 570, 1327, 1468, 1763, 2269
Bse118I RCCGGY 1 cut(s) 133
Bse3DI GCAATG 4 cut(s) 35, 1086, 1572, 1859
Bse8I GATNNNNATC 1 cut(s) 1130
BseAI TCCGGA 1 cut(s) 2440
BseBI CCWGG 6 cut(s) 503, 534, 1053, 1254, 1991, 2144
BseDI CCNNGG 7 cut(s) 309, 507, 1051, 1052, 1918, 1990, 2499
BseGI GGATG 8 cut(s) 21, 174, 348, 359, 1063, 1654, 1877, 2529
BseJI GATNNNNATC 1 cut(s) 1130
BseLI CCNNNNNNNGG 6 cut(s) 508, 570, 1327, 1468, 1763, 2269
BseMI GCAATG 4 cut(s) 35, 1086, 1572, 1859
BseMII CTCAG 3 cut(s) 77, 1679, 2552
BseSI GKGCMC 1 cut(s) 1769
BseXI GCAGC 7 cut(s) 259, 574, 896, 1654, 1995, 2258, 2360
BseYI CCCAGC 2 cut(s) 1886, 2236
BsgI GTGCAG 1 cut(s) 2184
BshFI GGCC 3 cut(s) 506, 1162, 1995
BshNI GGYRCC 3 cut(s) 287, 797, 1652
BsiHKCI CYCGRG 2 cut(s) 308, 565
BsiSI CCGG 3 cut(s) 134, 366, 2441
BslFI GGGAC 2 cut(s) 408, 1169
BslI CCNNNNNNNGG 6 cut(s) 508, 570, 1327, 1468, 1763, 2269
BsmAI GTCTC 4 cut(s) 124, 222, 1076, 2551
BsmFI GGGAC 2 cut(s) 408, 1169
BsmI GAATGC 3 cut(s) 94, 1027, 1951
BsnI GGCC 3 cut(s) 506, 1162, 1995
Bso31I GGTCTC 2 cut(s) 124, 1076
BsoBI CYCGRG 2 cut(s) 308, 565
Bsp1286I GDGCHC 1 cut(s) 1769
Bsp13I TCCGGA 1 cut(s) 2440
Bsp19I CCATGG 1 cut(s) 1918
BspACI CCGC 4 cut(s) 110, 1000, 1757, 2158
BspANI GGCC 3 cut(s) 506, 1162, 1995
BspCNI CTCAG 3 cut(s) 76, 1680, 2551
BspEI TCCGGA 1 cut(s) 2440
BspLI GGNNCC 9 cut(s) 159, 289, 531, 799, 1133, 1654, 1875, 1907, 2206
BspMAI CTGCAG 4 cut(s) 492, 697, 811, 1141
BspMI ACCTGC 1 cut(s) 2156
BspPI GGATC 7 cut(s) 152, 165, 439, 1126, 1139, 1555, 2524
BspT107I GGYRCC 3 cut(s) 287, 797, 1652
BspTNI GGTCTC 2 cut(s) 124, 1076
BsrBI CCGCTC 1 cut(s) 1759
BsrDI GCAATG 4 cut(s) 35, 1086, 1572, 1859
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 7 cut(s) 309, 507, 1051, 1052, 1918, 1990, 2499
BssNAI GTATAC 1 cut(s) 2399
BssNI GRCGYC 1 cut(s) 798
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 3 cut(s) 507, 1918, 2499
Bst1107I GTATAC 1 cut(s) 2399
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 6 cut(s) 503, 534, 1053, 1254, 1991, 2144
Bst4CI ACNGT 7 cut(s) 335, 584, 1076, 1278, 1771, 2087, 2152
Bst6I CTCTTC 3 cut(s) 1573, 1799, 1830
BstACI GRCGYC 1 cut(s) 798
BstAPI GCANNNNNTGC 1 cut(s) 487
BstBAI YACGTR 1 cut(s) 2291
BstC8I GCNNGC 4 cut(s) 94, 466, 1103, 1476
BstDEI CTNAG 4 cut(s) 63, 953, 1688, 2538
BstDSI CCRYGG 1 cut(s) 1918
BstENI CCTNNNNNAGG 2 cut(s) 506, 2267
BstF5I GGATG 8 cut(s) 21, 174, 348, 359, 1063, 1654, 1877, 2529
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 1 cut(s) 800
BstMAI GTCTC 4 cut(s) 124, 222, 1076, 2551
BstMWI GCNNNNNNNGC 6 cut(s) 487, 593, 806, 830, 1820, 1992
BstNI CCWGG 6 cut(s) 503, 534, 1053, 1254, 1991, 2144
BstNSI RCATGY 3 cut(s) 194, 1006, 2194
BstPAI GACNNNNGTC 1 cut(s) 420
BstSCI CCNGG 7 cut(s) 365, 501, 532, 1051, 1252, 1989, 2142
BstSFI CTRYAG 6 cut(s) 488, 693, 807, 1137, 1746, 2606
BstSLI GKGCMC 1 cut(s) 1769
BstSNI TACGTA 1 cut(s) 2291
BstV1I GCAGC 7 cut(s) 259, 574, 896, 1654, 1995, 2258, 2360
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 5 cut(s) 157, 1131, 1547, 2516, 2588
BstXI CCANNNNNNTGG 2 cut(s) 284, 1069
BstYI RGATCY 5 cut(s) 157, 1131, 1547, 2516, 2588
BstZ17I GTATAC 1 cut(s) 2399
BsuRI GGCC 3 cut(s) 506, 1162, 1995
BtgI CCRYGG 1 cut(s) 1918
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 8 cut(s) 21, 174, 348, 359, 1063, 1654, 1877, 2529
BtsIMutI CAGTG 9 cut(s) 589, 632, 746, 813, 864, 1081, 1767, 2092, 2402
BveI ACCTGC 1 cut(s) 2156
Cac8I GCNNGC 4 cut(s) 94, 466, 1103, 1476
CaiI CAGNNNCTG 2 cut(s) 815, 1181
CfoI GCGC 1 cut(s) 800
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 5 cut(s) 530, 1751, 1873, 1993, 2531
Csp6I GTAC 5 cut(s) 288, 336, 1395, 1428, 2409
CspCI CAANNNNNGTGG 4 cut(s) 1743, 1778, 2068, 2103
CviQI GTAC 5 cut(s) 288, 336, 1395, 1428, 2409
DdeI CTNAG 4 cut(s) 63, 953, 1688, 2538
DinI GGCGCC 1 cut(s) 799
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 3 cut(s) 1573, 1799, 1830
EarI CTCTTC 3 cut(s) 1573, 1799, 1830
Eco105I TACGTA 1 cut(s) 2291
Eco130I CCWWGG 3 cut(s) 507, 1918, 2499
Eco31I GGTCTC 2 cut(s) 124, 1076
Eco32I GATATC 1 cut(s) 1221
Eco47I GGWCC 4 cut(s) 530, 1751, 1873, 2531
Eco57I CTGAAG 2 cut(s) 1185, 1707
Eco88I CYCGRG 2 cut(s) 308, 565
EcoNI CCTNNNNNAGG 2 cut(s) 506, 2267
EcoO109I RGGNCCY 2 cut(s) 530, 2531
EcoRI GAATTC 1 cut(s) 1999
EcoRII CCWGG 6 cut(s) 501, 532, 1051, 1252, 1989, 2142
EcoRV GATATC 1 cut(s) 1221
EcoT14I CCWWGG 3 cut(s) 507, 1918, 2499
EcoT22I ATGCAT 1 cut(s) 1933
EgeI GGCGCC 1 cut(s) 799
EheI GGCGCC 1 cut(s) 799
ErhI CCWWGG 3 cut(s) 507, 1918, 2499
FaqI GGGAC 2 cut(s) 408, 1169
FauNDI CATATG 1 cut(s) 1449
FbaI TGATCA 2 cut(s) 1858, 2479
FblI GTMKAC 1 cut(s) 2398
Fnu4HI GCNGC 7 cut(s) 248, 588, 910, 1668, 1984, 2247, 2374
FokI GGATG 8 cut(s) 28, 161, 335, 346, 1070, 1661, 1864, 2536
Fsp4HI GCNGC 7 cut(s) 248, 588, 910, 1668, 1984, 2247, 2374
FspBI CTAG 7 cut(s) 600, 669, 687, 783, 936, 1200, 2310
GlaI GCGC 1 cut(s) 799
GluI GCNGC 7 cut(s) 248, 588, 910, 1668, 1984, 2247, 2374
GsaI CCCAGC 2 cut(s) 1890, 2240
GsuI CTGGAG 1 cut(s) 1275
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 3 cut(s) 506, 1162, 1995
HapII CCGG 3 cut(s) 134, 366, 2441
HhaI GCGC 1 cut(s) 800
Hin1I GRCGYC 1 cut(s) 798
Hin6I GCGC 1 cut(s) 798
HinP1I GCGC 1 cut(s) 798
HincII GTYRAC 3 cut(s) 1048, 1485, 1700
HindII GTYRAC 3 cut(s) 1048, 1485, 1700
HinfI GANTC 7 cut(s) 76, 698, 842, 1602, 1616, 1923, 2417
HpaI GTTAAC 1 cut(s) 1048
HpaII CCGG 3 cut(s) 134, 366, 2441
HphI GGTGA 3 cut(s) 837, 1242, 2351
Hpy166II GTNNAC 7 cut(s) 1048, 1485, 1700, 1873, 2342, 2399, 2411
Hpy8I GTNNAC 7 cut(s) 1048, 1485, 1700, 1873, 2342, 2399, 2411
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 7 cut(s) 51, 658, 700, 814, 1666, 2440, 2501
HpyCH4III ACNGT 7 cut(s) 335, 584, 1076, 1278, 1771, 2087, 2152
HpyCH4IV ACGT 1 cut(s) 2290
HpyF10VI GCNNNNNNNGC 6 cut(s) 487, 593, 806, 830, 1820, 1992
HpyF3I CTNAG 4 cut(s) 63, 953, 1688, 2538
HpySE526I ACGT 1 cut(s) 2290
Hsp92I GRCGYC 1 cut(s) 798
HspAI GCGC 1 cut(s) 798
KasI GGCGCC 1 cut(s) 797
Kpn2I TCCGGA 1 cut(s) 2440
KpnI GGTACC 1 cut(s) 291
Ksp22I TGATCA 2 cut(s) 1858, 2479
KspAI GTTAAC 1 cut(s) 1048
LmnI GCTCC 5 cut(s) 67, 410, 595, 1471, 2210
Lsp1109I GCAGC 7 cut(s) 259, 574, 896, 1654, 1995, 2258, 2360
LweI GCATC 9 cut(s) 129, 183, 605, 674, 788, 1048, 1373, 1654, 2580
MaeI CTAG 7 cut(s) 600, 669, 687, 783, 936, 1200, 2310
MaeII ACGT 1 cut(s) 2290
MaeIII GTNAC 1 cut(s) 521
MbiI CCGCTC 1 cut(s) 1759
MboII GAAGA 6 cut(s) 51, 1178, 1560, 1611, 1786, 1847
MflI RGATCY 5 cut(s) 157, 1131, 1547, 2516, 2588
MhlI GDGCHC 1 cut(s) 1769
MlsI TGGCCA 1 cut(s) 506
MluNI TGGCCA 1 cut(s) 506
Mly113I GGCGCC 1 cut(s) 798
MmeI TCCRAC 2 cut(s) 371, 2457
Mox20I TGGCCA 1 cut(s) 506
Mph1103I ATGCAT 1 cut(s) 1933
MroI TCCGGA 1 cut(s) 2440
MroXI GAANNNNTTC 3 cut(s) 723, 1567, 2428
MscI TGGCCA 1 cut(s) 506
MseI TTAA 6 cut(s) 195, 1014, 1047, 1466, 1913, 2354
MslI CAYNNNNRTG 1 cut(s) 1067
Msp20I TGGCCA 1 cut(s) 506
MspA1I CMGCKG 3 cut(s) 1745, 2249, 2373
MspI CCGG 3 cut(s) 134, 366, 2441
MspR9I CCNGG 7 cut(s) 367, 503, 534, 1053, 1254, 1991, 2144
Mva1269I GAATGC 3 cut(s) 94, 1027, 1951
MvaI CCWGG 6 cut(s) 503, 534, 1053, 1254, 1991, 2144
MwoI GCNNNNNNNGC 6 cut(s) 487, 593, 806, 830, 1820, 1992
NarI GGCGCC 1 cut(s) 798
NciI CCSGG 1 cut(s) 367
NcoI CCATGG 1 cut(s) 1918
NdeI CATATG 1 cut(s) 1449
NlaIV GGNNCC 9 cut(s) 159, 289, 531, 799, 1133, 1654, 1875, 1907, 2206
NmuCI GTSAC 1 cut(s) 521
NsiI ATGCAT 1 cut(s) 1933
NspI RCATGY 3 cut(s) 194, 1006, 2194
PaeR7I CTCGAG 1 cut(s) 565
PasI CCCWGGG 1 cut(s) 1052
PciI ACATGT 2 cut(s) 190, 2190
PctI GAATGC 3 cut(s) 94, 1027, 1951
PdmI GAANNNNTTC 3 cut(s) 723, 1567, 2428
PfeI GAWTC 7 cut(s) 76, 698, 842, 1602, 1616, 1923, 2417
PflMI CCANNNNNTGG 1 cut(s) 1327
PkrI GCNGC 7 cut(s) 249, 589, 911, 1669, 1985, 2248, 2375
PluTI GGCGCC 1 cut(s) 801
Ppu21I YACGTR 1 cut(s) 2291
PpuMI RGGWCCY 2 cut(s) 530, 2531
PscI ACATGT 2 cut(s) 190, 2190
PshAI GACNNNNGTC 1 cut(s) 420
Psp5II RGGWCCY 2 cut(s) 530, 2531
Psp6I CCWGG 6 cut(s) 501, 532, 1051, 1252, 1989, 2142
PspFI CCCAGC 2 cut(s) 1886, 2236
PspGI CCWGG 6 cut(s) 501, 532, 1051, 1252, 1989, 2142
PspN4I GGNNCC 9 cut(s) 159, 289, 531, 799, 1133, 1654, 1875, 1907, 2206
PspPI GGNCC 5 cut(s) 530, 1751, 1873, 1993, 2531
PspPPI RGGWCCY 2 cut(s) 530, 2531
PspXI VCTCGAGB 1 cut(s) 565
PstI CTGCAG 4 cut(s) 492, 697, 811, 1141
PstNI CAGNNNCTG 2 cut(s) 815, 1181
PsuI RGATCY 5 cut(s) 157, 1131, 1547, 2516, 2588
PvuII CAGCTG 3 cut(s) 1745, 2249, 2373
RsaI GTAC 5 cut(s) 289, 337, 1396, 1429, 2410
RsaNI GTAC 5 cut(s) 288, 336, 1395, 1428, 2409
RseI CAYNNNNRTG 1 cut(s) 1067
SaqAI TTAA 6 cut(s) 195, 1014, 1047, 1466, 1913, 2354
SatI GCNGC 7 cut(s) 248, 588, 910, 1668, 1984, 2247, 2374
Sau96I GGNCC 5 cut(s) 530, 1751, 1873, 1993, 2531
ScrFI CCNGG 7 cut(s) 367, 503, 534, 1053, 1254, 1991, 2144
SduI GDGCHC 1 cut(s) 1769
SfaNI GCATC 9 cut(s) 129, 183, 605, 674, 788, 1048, 1373, 1654, 2580
SfcI CTRYAG 6 cut(s) 488, 693, 807, 1137, 1746, 2606
SfoI GGCGCC 1 cut(s) 799
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 4 cut(s) 530, 1751, 1873, 2531
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 1067
SmlI CTYRAG 2 cut(s) 565, 1412
SmoI CTYRAG 2 cut(s) 565, 1412
SnaBI TACGTA 1 cut(s) 2291
SpeI ACTAGT 2 cut(s) 686, 935
SsiI CCGC 4 cut(s) 110, 1000, 1757, 2158
SspDI GGCGCC 1 cut(s) 797
SspI AATATT 2 cut(s) 610, 724
SspMI CTAG 7 cut(s) 600, 669, 687, 783, 936, 1200, 2310
StyD4I CCNGG 7 cut(s) 365, 501, 532, 1051, 1252, 1989, 2142
StyI CCWWGG 3 cut(s) 507, 1918, 2499
TaaI ACNGT 7 cut(s) 335, 584, 1076, 1278, 1771, 2087, 2152
TaiI ACGT 1 cut(s) 2293
TaqI TCGA 2 cut(s) 32, 566
TfiI GAWTC 7 cut(s) 76, 698, 842, 1602, 1616, 1923, 2417
Tru1I TTAA 6 cut(s) 195, 1014, 1047, 1466, 1913, 2354
Tru9I TTAA 6 cut(s) 195, 1014, 1047, 1466, 1913, 2354
TscAI CASTG 9 cut(s) 589, 639, 753, 820, 864, 1081, 1774, 2092, 2409
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 7 cut(s) 247, 587, 909, 1667, 1983, 2246, 2373
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 9 cut(s) 32, 716, 917, 1164, 1208, 1799, 1974, 2496, 2540
TspRI CASTG 9 cut(s) 589, 639, 753, 820, 864, 1081, 1774, 2092, 2409
Van91I CCANNNNNTGG 1 cut(s) 1327
VpaK11BI GGWCC 4 cut(s) 530, 1751, 1873, 2531
XagI CCTNNNNNAGG 2 cut(s) 506, 2267
XapI RAATTY 6 cut(s) 205, 271, 300, 615, 1306, 1999
XbaI TCTAGA 2 cut(s) 599, 668
XceI RCATGY 3 cut(s) 194, 1006, 2194
XcmI CCANNNNNNNNNTGG 1 cut(s) 1916
XhoI CTCGAG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 2398
XmnI GAANNNNTTC 3 cut(s) 723, 1567, 2428
XspI CTAG 7 cut(s) 600, 669, 687, 783, 936, 1200, 2310
Zsp2I ATGCAT 1 cut(s) 1933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.